Wall clock time and date at job start Tue Mar 31 2020 13:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47302 * 2 1 4 4 C 1.50698 * 109.47273 * 120.00571 * 2 1 3 5 5 C 1.33393 * 125.20094 * 259.99574 * 4 2 1 6 6 C 1.38420 * 114.92237 * 179.97438 * 5 4 2 7 7 C 1.33395 * 114.92023 * 359.97438 * 6 5 4 8 8 S 1.75882 * 125.20452 * 79.68937 * 4 2 1 9 9 N 1.46903 * 109.46793 * 239.99976 * 2 1 3 10 10 C 1.46896 * 111.00050 * 183.95312 * 9 2 1 11 11 C 1.38579 * 110.99746 * 60.00244 * 9 2 1 12 12 N 1.31215 * 126.47781 * 58.35140 * 11 9 2 13 13 N 1.28521 * 109.86313 * 179.82466 * 12 11 9 14 14 C 1.30291 * 110.05346 * 0.44742 * 13 12 11 15 15 C 1.50701 * 126.34596 * 179.69323 * 14 13 12 16 16 C 1.52997 * 109.47242 * 270.04364 * 15 14 13 17 17 C 1.50701 * 109.47242 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00179 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99971 * 179.97438 * 17 16 15 20 20 N 1.31521 * 119.99605 * 179.97438 * 19 17 16 21 21 Si 1.86792 * 119.99985 * 0.02562 * 19 17 16 22 22 H 1.48505 * 109.47299 * 89.99964 * 21 19 17 23 23 H 1.48507 * 109.47065 * 209.99609 * 21 19 17 24 24 H 1.48494 * 109.47535 * 329.99683 * 21 19 17 25 25 N 1.36462 * 126.47197 * 238.66150 * 11 9 2 26 26 C 1.46498 * 127.13364 * 0.02562 * 25 11 9 27 27 H 1.08997 * 109.47188 * 59.99530 * 1 2 3 28 28 H 1.08997 * 109.47302 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46621 * 299.99821 * 1 2 3 30 30 H 1.08003 * 122.53817 * 359.97438 * 5 4 2 31 31 H 1.07991 * 122.54428 * 180.02562 * 6 5 4 32 32 H 1.07997 * 125.20212 * 179.97438 * 7 6 5 33 33 H 1.08997 * 109.47122 * 65.89460 * 10 9 2 34 34 H 1.09000 * 109.47257 * 185.88903 * 10 9 2 35 35 H 1.09001 * 109.47481 * 305.89050 * 10 9 2 36 36 H 1.08998 * 109.47324 * 30.04615 * 15 14 13 37 37 H 1.09003 * 109.47093 * 150.04572 * 15 14 13 38 38 H 1.09000 * 109.47465 * 299.99899 * 16 15 14 39 39 H 1.08999 * 109.47322 * 60.00328 * 16 15 14 40 40 H 0.97001 * 119.99845 * 180.02562 * 20 19 17 41 41 H 1.09003 * 109.47013 * 95.59500 * 26 25 11 42 42 H 1.09000 * 109.46995 * 215.58993 * 26 25 11 43 43 H 1.08994 * 109.47631 * 335.58714 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.4672 -0.1119 2.3403 6 6 2.8803 -0.9719 3.3432 7 6 2.7804 -2.2689 3.0480 8 16 2.1279 -2.4559 1.4254 9 7 2.0196 -0.6925 -1.1995 10 6 3.4850 -0.7946 -1.1872 11 6 1.5753 -0.0641 -2.3519 12 7 1.7927 1.1841 -2.6931 13 7 1.2381 1.4301 -3.8260 14 6 0.6307 0.3650 -4.2668 15 6 -0.1422 0.2462 -5.5550 16 6 -1.6073 0.6100 -5.3062 17 6 -2.3801 0.4918 -6.5945 18 1 -1.8767 0.1872 -7.5002 19 6 -3.7300 0.7715 -6.6169 20 7 -4.4043 0.6688 -7.7414 21 14 -4.6009 1.2976 -5.0503 22 1 -4.5493 2.7767 -4.9281 23 1 -6.0173 0.8541 -5.0986 24 1 -3.9286 0.6803 -3.8790 25 7 0.8238 -0.6248 -3.3434 26 6 0.3267 -2.0015 -3.4053 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 2.4949 0.9623 2.4482 31 1 3.2543 -0.6195 4.2931 32 1 3.0552 -3.0801 3.7059 33 1 3.7973 -1.4403 -0.3665 34 1 3.8278 -1.2164 -2.1320 35 1 3.9172 0.1971 -1.0540 36 1 0.2800 0.9251 -6.2959 37 1 -0.0796 -0.7779 -5.9232 38 1 -2.0295 -0.0689 -4.5653 39 1 -1.6700 1.6340 -4.9381 40 1 -5.3539 0.8659 -7.7573 41 1 -0.6938 -2.0368 -3.0237 42 1 0.3402 -2.3465 -4.4391 43 1 0.9638 -2.6455 -2.7991 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339913483.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:54 Heat of formation + Delta-G solvation = 103.734904 kcal Electronic energy + Delta-G solvation = -24649.379375 eV Core-core repulsion = 21243.433076 eV Total energy + Delta-G solvation = -3405.946299 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.137 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.08001 -39.87424 -38.03825 -36.39776 -35.60043 -33.94213 -32.99538 -30.67942 -29.62625 -28.53168 -27.40402 -26.43479 -25.44030 -23.59095 -23.28270 -21.60973 -21.36049 -20.27112 -19.05113 -18.38121 -18.05856 -17.31493 -17.04198 -16.43907 -16.36411 -15.92254 -15.49373 -15.17789 -15.04877 -14.71642 -14.52343 -14.27741 -13.98563 -13.72222 -13.57605 -13.45390 -13.35584 -13.03838 -12.99372 -12.84912 -12.79359 -12.62103 -12.57751 -12.23183 -12.06251 -11.81898 -11.64163 -11.53300 -11.43275 -11.09967 -10.78899 -10.09265 -10.00917 -9.60120 -9.28877 -8.30998 -6.34691 0.04696 0.65511 0.73076 1.17103 1.23081 1.32662 1.35124 1.44303 1.70553 1.85626 2.32742 2.57837 3.04508 3.37704 3.48538 3.79484 3.86276 3.97512 4.08305 4.15303 4.28008 4.28751 4.36824 4.51536 4.51906 4.53715 4.61659 4.64947 4.70085 4.71791 4.76085 4.79199 4.84263 4.99572 5.02711 5.15636 5.26435 5.36796 5.41089 5.45512 5.48080 5.61401 5.63370 6.14621 6.23675 6.72490 7.29862 7.64720 8.84989 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.021049 B = 0.003089 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.925046 B = 9062.009727 C = 9533.173124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.169 3.831 3 H 0.064 0.936 4 C -0.187 4.187 5 C -0.131 4.131 6 C -0.143 4.143 7 C -0.217 4.217 8 S 0.129 5.871 9 N -0.453 5.453 10 C 0.035 3.965 11 C 0.345 3.655 12 N -0.343 5.343 13 N -0.328 5.328 14 C 0.200 3.800 15 C -0.011 4.011 16 C 0.006 3.994 17 C -0.526 4.526 18 H 0.049 0.951 19 C 0.015 3.985 20 N -0.943 5.943 21 Si 0.939 3.061 22 H -0.275 1.275 23 H -0.279 1.279 24 H -0.254 1.254 25 N -0.462 5.462 26 C 0.071 3.929 27 H 0.030 0.970 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.145 0.855 31 H 0.159 0.841 32 H 0.185 0.815 33 H 0.102 0.898 34 H 0.072 0.928 35 H 0.038 0.962 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.021 0.979 39 H 0.007 0.993 40 H 0.267 0.733 41 H 0.084 0.916 42 H 0.103 0.897 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.003 -10.363 24.550 31.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.060 3.940 3 H 0.082 0.918 4 C -0.305 4.305 5 C -0.163 4.163 6 C -0.173 4.173 7 C -0.352 4.352 8 S 0.393 5.607 9 N -0.179 5.179 10 C -0.112 4.112 11 C -0.012 4.012 12 N -0.187 5.187 13 N -0.169 5.169 14 C -0.068 4.068 15 C -0.050 4.050 16 C -0.033 4.033 17 C -0.564 4.564 18 H 0.067 0.933 19 C -0.183 4.183 20 N -0.584 5.584 21 Si 0.764 3.236 22 H -0.200 1.200 23 H -0.204 1.204 24 H -0.178 1.178 25 N -0.154 5.154 26 C -0.070 4.070 27 H 0.049 0.951 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.163 0.837 31 H 0.177 0.823 32 H 0.203 0.797 33 H 0.120 0.880 34 H 0.090 0.910 35 H 0.056 0.944 36 H 0.106 0.894 37 H 0.116 0.884 38 H 0.039 0.961 39 H 0.025 0.975 40 H 0.076 0.924 41 H 0.103 0.897 42 H 0.122 0.878 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 15.802 -10.713 23.645 30.390 hybrid contribution -0.597 1.241 0.863 1.625 sum 15.205 -9.471 24.508 30.357 Atomic orbital electron populations 1.21822 0.92998 1.02979 1.01711 1.20002 0.95499 0.94716 0.83810 0.91779 1.24120 1.09801 0.97610 0.98989 1.20356 1.01110 1.02073 0.92761 1.20342 1.03445 0.92201 1.01299 1.26112 1.07635 1.01377 1.00095 1.84445 1.62349 1.02780 1.11173 1.58929 1.13273 1.49038 0.96691 1.22525 0.82606 1.01921 1.04118 1.22257 0.98104 0.89014 0.91868 1.74418 1.22357 1.13094 1.08808 1.73967 1.13278 1.23591 1.06025 1.25290 1.00845 0.84781 0.95919 1.19977 0.93286 1.04040 0.87736 1.19363 0.91821 0.96092 0.96027 1.21303 0.93924 1.45753 0.95380 0.93317 1.25796 0.98453 0.94981 0.99040 1.70028 1.09262 1.50869 1.28193 0.85831 0.77982 0.79077 0.80760 1.20029 1.20439 1.17803 1.46386 1.39131 1.13573 1.16285 1.22363 1.01580 0.76908 1.06140 0.95123 0.90983 0.89871 0.83707 0.82326 0.79734 0.88005 0.90951 0.94366 0.89371 0.88426 0.96096 0.97482 0.92368 0.89727 0.87836 0.86593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 9.05 71.98 0.65 -2.53 16 2 C 0.17 3.71 2.42 44.17 0.11 3.82 16 3 H 0.06 1.61 8.05 -2.39 -0.02 1.59 16 4 C -0.19 -3.28 4.17 24.59 0.10 -3.17 16 5 C -0.13 -2.00 10.04 21.22 0.21 -1.79 16 6 C -0.14 -1.74 10.18 21.22 0.22 -1.52 16 7 C -0.22 -2.50 11.23 66.72 0.75 -1.76 16 8 S 0.13 1.90 21.91 -56.49 -1.24 0.66 16 9 N -0.45 -10.46 4.41 -711.01 -3.14 -13.60 16 10 C 0.04 0.70 9.06 127.69 1.16 1.86 16 11 C 0.34 10.44 5.01 260.11 1.30 11.74 16 12 N -0.34 -12.80 12.11 -58.00 -0.70 -13.50 16 13 N -0.33 -13.52 12.18 -49.54 -0.60 -14.13 16 14 C 0.20 7.37 7.32 137.64 1.01 8.38 16 15 C -0.01 -0.41 5.53 29.85 0.16 -0.24 16 16 C 0.01 0.26 4.02 29.85 0.12 0.38 16 17 C -0.53 -29.09 9.66 25.60 0.25 -28.84 16 18 H 0.05 2.89 7.99 -2.91 -0.02 2.87 16 19 C 0.02 0.87 5.47 84.65 0.46 1.33 16 20 N -0.94 -57.72 13.96 21.45 0.30 -57.42 16 21 Si 0.94 44.36 27.47 68.60 1.88 46.24 16 22 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 24 H -0.25 -11.30 6.54 99.48 0.65 -10.65 16 25 N -0.46 -13.91 3.21 -538.19 -1.73 -15.64 16 26 C 0.07 1.51 11.00 127.77 1.41 2.92 16 27 H 0.03 0.89 7.22 -2.39 -0.02 0.88 16 28 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 30 H 0.15 1.96 8.06 -2.91 -0.02 1.93 16 31 H 0.16 1.23 8.06 -2.92 -0.02 1.21 16 32 H 0.19 1.21 8.06 -2.91 -0.02 1.19 16 33 H 0.10 1.63 6.23 -2.39 -0.01 1.62 16 34 H 0.07 1.42 8.06 -2.39 -0.02 1.40 16 35 H 0.04 0.83 8.12 -2.39 -0.02 0.81 16 36 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 37 H 0.10 3.26 7.40 -2.39 -0.02 3.24 16 38 H 0.02 0.93 7.20 -2.39 -0.02 0.91 16 39 H 0.01 0.33 7.57 -2.39 -0.02 0.32 16 40 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 41 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.10 1.95 7.43 -2.39 -0.02 1.93 16 43 H 0.12 1.88 8.10 -2.39 -0.02 1.86 16 Total: -1.00 -70.65 368.57 3.63 -67.02 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 0.94 Total: 9.79 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: 7.91 Total: -9.43 kcal Atomic # 7 Polarization: -108.41 SS G_CDS: -5.87 Total: -114.28 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.88 Total: 46.24 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -1.24 Total: 0.66 kcal Total: -70.65 3.63 -67.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339913483.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.758 kcal (2) G-P(sol) polarization free energy of solvation -70.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds