Wall clock time and date at job start Tue Mar 31 2020 13:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47066 * 2 1 4 4 C 1.50704 * 109.47236 * 240.00455 * 2 1 3 5 5 C 1.34508 * 125.79349 * 99.99536 * 4 2 1 6 6 C 1.41382 * 106.84441 * 179.97438 * 5 4 2 7 7 C 1.34516 * 106.83535 * 0.02562 * 6 5 4 8 8 O 1.34302 * 125.78231 * 279.69523 * 4 2 1 9 9 N 1.46498 * 109.47017 * 120.00259 * 2 1 3 10 10 C 1.46490 * 120.00230 * 60.00018 * 9 2 1 11 11 C 1.34782 * 119.99445 * 240.00152 * 9 2 1 12 12 O 1.21343 * 120.00089 * 358.91038 * 11 9 2 13 13 C 1.49458 * 119.99512 * 178.90968 * 11 9 2 14 14 O 1.21353 * 119.99779 * 4.30913 * 13 11 9 15 15 N 1.34770 * 119.99890 * 184.30597 * 13 11 9 16 16 C 1.46502 * 120.00073 * 185.05339 * 15 13 11 17 17 C 1.52994 * 109.46978 * 184.87502 * 16 15 13 18 18 C 1.50705 * 115.55165 * 306.65496 * 17 16 15 19 19 H 1.08000 * 119.99611 * 95.31061 * 18 17 16 20 20 C 1.37873 * 119.99638 * 275.04125 * 18 17 16 21 21 N 1.31514 * 120.00434 * 355.35088 * 20 18 17 22 22 Si 1.86801 * 119.99607 * 175.35385 * 20 18 17 23 23 H 1.48504 * 109.47238 * 90.00032 * 22 20 18 24 24 H 1.48501 * 109.47070 * 209.99834 * 22 20 18 25 25 H 1.48497 * 109.47389 * 330.00053 * 22 20 18 26 26 C 1.53000 * 117.50281 * 92.33093 * 17 16 15 27 27 C 1.53002 * 117.49935 * 160.98919 * 17 16 15 28 28 H 1.08997 * 109.47258 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47702 * 300.00134 * 1 2 3 30 30 H 1.09006 * 109.46964 * 60.00185 * 1 2 3 31 31 H 1.07999 * 126.57752 * 359.96965 * 5 4 2 32 32 H 1.07994 * 126.58275 * 180.02562 * 6 5 4 33 33 H 1.08001 * 125.78825 * 180.02562 * 7 6 5 34 34 H 1.08999 * 109.47288 * 262.44184 * 10 9 2 35 35 H 1.09004 * 109.47175 * 22.43669 * 10 9 2 36 36 H 1.08999 * 109.47456 * 142.44099 * 10 9 2 37 37 H 0.97005 * 119.99934 * 5.04729 * 15 13 11 38 38 H 1.08999 * 109.47287 * 64.86969 * 16 15 13 39 39 H 1.09003 * 109.46799 * 304.86884 * 16 15 13 40 40 H 0.96997 * 119.99627 * 185.00136 * 21 20 18 41 41 H 1.08998 * 117.50254 * 215.00090 * 26 17 16 42 42 H 1.09003 * 117.49737 * 0.02562 * 26 17 16 43 43 H 1.09007 * 117.49691 * 359.97430 * 27 17 16 44 44 H 1.08998 * 117.50174 * 144.97220 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 6 2.4732 -0.1190 -2.3554 6 6 2.8443 -1.1541 -3.2440 7 6 2.6076 -2.3162 -2.6091 8 8 2.1212 -2.0411 -1.3878 9 7 2.0183 -0.6907 1.1961 10 6 1.6644 -2.0931 1.4279 11 6 2.7931 -0.0356 2.0833 12 8 3.1025 1.1203 1.8814 13 6 3.2712 -0.7329 3.3158 14 8 3.0276 -1.9103 3.4798 15 7 3.9728 -0.0540 4.2449 16 6 4.5361 -0.7603 5.3981 17 6 5.1739 0.2504 6.3534 18 6 6.1833 1.1826 5.7343 19 1 5.8784 2.1629 5.3988 20 6 7.4970 0.7861 5.6013 21 7 7.8892 -0.3674 6.0964 22 14 8.7201 1.8875 4.7178 23 1 9.3561 2.8058 5.6963 24 1 9.7641 1.0507 4.0734 25 1 8.0126 2.6814 3.6813 26 6 4.3019 0.8026 7.4828 27 6 5.4177 -0.1974 7.7959 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 2.5321 0.9428 -2.5437 32 1 3.2417 -1.0348 -4.2411 33 1 2.7838 -3.3029 -3.0113 34 1 0.8157 -2.1458 2.1099 35 1 1.3988 -2.5622 0.4805 36 1 2.5153 -2.6150 1.8658 37 1 4.1048 0.9024 4.1500 38 1 5.2935 -1.4662 5.0574 39 1 3.7434 -1.2999 5.9164 40 1 8.8268 -0.6141 6.0673 41 1 4.4583 1.8402 7.7781 42 1 3.2740 0.4456 7.5456 43 1 5.1233 -1.2120 8.0645 44 1 6.3082 0.1819 8.2970 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347564297.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:25 Heat of formation + Delta-G solvation = -32.078947 kcal Electronic energy + Delta-G solvation = -27176.698795 eV Core-core repulsion = 23289.817543 eV Total energy + Delta-G solvation = -3886.881252 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.58852 -41.85138 -39.81330 -38.49464 -37.59893 -35.07936 -34.13422 -33.98293 -32.90169 -29.51216 -28.82444 -27.98543 -27.42495 -25.65402 -23.49298 -22.89200 -22.72404 -21.54172 -21.27828 -20.58751 -18.91361 -18.53173 -18.02298 -17.91198 -17.26180 -17.00232 -16.73792 -16.61819 -16.12555 -15.88971 -15.28538 -15.13673 -14.76764 -14.47400 -14.35443 -14.20423 -13.95127 -13.73389 -13.61165 -13.52077 -13.34050 -13.20944 -12.96394 -12.91460 -12.84028 -12.54257 -12.39056 -12.30035 -12.00029 -11.39687 -10.98722 -10.87427 -10.52554 -10.45199 -10.16698 -10.03901 -9.84602 -9.45164 -8.11814 -6.25325 0.30721 0.68790 1.27461 1.39253 1.43477 1.51357 1.70597 1.96173 2.15595 2.40146 2.51551 3.15502 3.30875 3.51554 3.58067 3.95616 4.04633 4.15734 4.20666 4.21307 4.30467 4.50899 4.62918 4.64813 4.65549 4.68418 4.75863 4.84071 4.91699 4.96951 5.00391 5.03635 5.12961 5.18465 5.24186 5.28233 5.43029 5.52772 5.57551 5.69317 5.76283 5.82688 6.16886 6.30824 6.35809 6.67626 6.82048 6.98622 7.44796 8.94654 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015511 B = 0.003364 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.725879 B = 8321.625238 C = 9190.348916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.213 3.787 3 H 0.121 0.879 4 C -0.042 4.042 5 C -0.206 4.206 6 C -0.227 4.227 7 C -0.041 4.041 8 O -0.182 6.182 9 N -0.577 5.577 10 C 0.070 3.930 11 C 0.510 3.490 12 O -0.541 6.541 13 C 0.496 3.504 14 O -0.542 6.542 15 N -0.667 5.667 16 C 0.175 3.825 17 C -0.003 4.003 18 C -0.508 4.508 19 H 0.058 0.942 20 C 0.032 3.968 21 N -0.902 5.902 22 Si 0.941 3.059 23 H -0.274 1.274 24 H -0.289 1.289 25 H -0.271 1.271 26 C -0.182 4.182 27 C -0.146 4.146 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.159 0.841 32 H 0.169 0.831 33 H 0.236 0.764 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.414 0.586 38 H 0.039 0.961 39 H 0.060 0.940 40 H 0.260 0.740 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.076 0.924 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.081 -2.801 -15.798 22.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.111 3.889 3 H 0.139 0.861 4 C -0.093 4.093 5 C -0.226 4.226 6 C -0.246 4.246 7 C -0.108 4.108 8 O -0.078 6.078 9 N -0.310 5.310 10 C -0.071 4.071 11 C 0.293 3.707 12 O -0.418 6.418 13 C 0.277 3.723 14 O -0.422 6.422 15 N -0.317 5.317 16 C 0.052 3.948 17 C -0.004 4.004 18 C -0.546 4.546 19 H 0.076 0.924 20 C -0.169 4.169 21 N -0.539 5.539 22 Si 0.768 3.232 23 H -0.200 1.200 24 H -0.215 1.215 25 H -0.195 1.195 26 C -0.219 4.219 27 C -0.184 4.184 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.112 0.888 31 H 0.177 0.823 32 H 0.186 0.814 33 H 0.252 0.748 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.251 0.749 38 H 0.058 0.942 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.100 0.900 42 H 0.109 0.891 43 H 0.094 0.906 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.005 -3.383 -15.584 21.896 hybrid contribution 1.435 0.894 -0.463 1.753 sum -13.570 -2.489 -16.047 21.162 Atomic orbital electron populations 1.22136 0.90339 1.04038 1.04300 1.19920 0.96517 0.95605 0.76885 0.86148 1.22696 1.06881 0.81302 0.98428 1.21907 1.04833 1.01752 0.94111 1.22159 1.07622 0.91932 1.02843 1.24871 1.01208 1.02020 0.82685 1.84049 1.65580 1.24279 1.33898 1.47876 1.47914 1.14185 1.21048 1.22418 1.03099 0.78901 1.02685 1.20221 0.79317 0.86284 0.84859 1.90731 1.56660 1.17459 1.76943 1.20154 0.80329 0.87071 0.84749 1.90622 1.58049 1.15951 1.77574 1.45834 1.50055 1.13476 1.22315 1.20806 0.94819 0.93805 0.85391 1.19074 0.97015 0.97054 0.87250 1.20624 0.93133 1.00317 1.40494 0.92391 1.25587 0.99922 0.95869 0.95563 1.70078 1.16152 1.22072 1.45583 0.85809 0.79124 0.79055 0.79258 1.19964 1.21506 1.19524 1.23064 0.94838 0.98362 1.05651 1.22382 0.98337 0.97275 1.00395 0.91030 0.90811 0.88769 0.82346 0.81379 0.74787 0.91153 0.89177 0.89507 0.74894 0.94228 0.92185 0.93093 0.90029 0.89078 0.90589 0.91679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.18 71.98 0.66 -1.72 16 2 C 0.21 4.80 3.09 44.25 0.14 4.94 16 3 H 0.12 2.92 6.89 -2.39 -0.02 2.91 16 4 C -0.04 -0.95 6.04 24.83 0.15 -0.80 16 5 C -0.21 -4.23 10.80 22.19 0.24 -3.99 16 6 C -0.23 -3.95 10.91 22.19 0.24 -3.71 16 7 C -0.04 -0.68 12.09 66.97 0.81 0.13 16 8 O -0.18 -3.95 8.12 -2.51 -0.02 -3.97 16 9 N -0.58 -15.92 2.75 -828.38 -2.28 -18.20 16 10 C 0.07 1.73 8.30 127.77 1.06 2.79 16 11 C 0.51 17.59 7.74 87.27 0.68 18.26 16 12 O -0.54 -20.56 15.82 -3.23 -0.05 -20.62 16 13 C 0.50 18.96 7.79 87.27 0.68 19.64 16 14 O -0.54 -21.35 13.12 -3.26 -0.04 -21.39 16 15 N -0.67 -27.34 5.39 -464.41 -2.50 -29.84 16 16 C 0.18 7.75 5.61 86.38 0.48 8.23 16 17 C 0.00 -0.15 1.64 -52.93 -0.09 -0.24 16 18 C -0.51 -26.30 8.01 25.60 0.21 -26.10 16 19 H 0.06 2.98 7.82 -2.91 -0.02 2.96 16 20 C 0.03 1.70 5.43 84.65 0.46 2.16 16 21 N -0.90 -50.27 12.65 21.45 0.27 -49.99 16 22 Si 0.94 43.07 29.54 68.60 2.03 45.10 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 24 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 25 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 26 C -0.18 -7.29 9.92 30.62 0.30 -6.99 16 27 C -0.15 -6.52 9.18 30.62 0.28 -6.24 16 28 H 0.07 1.07 7.65 -2.39 -0.02 1.05 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.16 2.78 8.06 -2.91 -0.02 2.75 16 32 H 0.17 2.10 8.06 -2.91 -0.02 2.07 16 33 H 0.24 1.93 8.06 -2.91 -0.02 1.91 16 34 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.09 1.90 5.59 -2.39 -0.01 1.89 16 36 H 0.09 2.60 5.50 -2.39 -0.01 2.59 16 37 H 0.41 17.19 7.39 -92.70 -0.69 16.51 16 38 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.06 2.48 8.04 -2.39 -0.02 2.46 16 40 H 0.26 13.99 8.32 -92.71 -0.77 13.22 16 41 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 42 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 43 H 0.08 3.17 8.14 -2.38 -0.02 3.15 16 44 H 0.06 3.19 8.14 -2.39 -0.02 3.17 16 Total: -1.00 -63.37 370.98 4.04 -59.33 By element: Atomic # 1 Polarization: 32.88 SS G_CDS: 0.34 Total: 33.21 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: 6.30 Total: 6.37 kcal Atomic # 7 Polarization: -93.53 SS G_CDS: -4.51 Total: -98.04 kcal Atomic # 8 Polarization: -45.86 SS G_CDS: -0.11 Total: -45.98 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -63.37 4.04 -59.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347564297.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.255 kcal (2) G-P(sol) polarization free energy of solvation -63.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds