Wall clock time and date at job start Tue Mar 31 2020 13:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34774 * 119.99768 * 2 1 4 4 O 1.21276 * 120.00622 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99692 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47452 * 179.97438 * 5 3 2 7 7 H 1.09003 * 109.46512 * 54.99890 * 6 5 3 8 8 C 1.52999 * 109.47326 * 174.99710 * 6 5 3 9 9 N 1.46497 * 109.47022 * 295.00191 * 6 5 3 10 10 C 1.34779 * 120.00029 * 154.99787 * 9 6 5 11 11 O 1.21280 * 119.99730 * 359.97438 * 10 9 6 12 12 C 1.50697 * 119.99832 * 179.97438 * 10 9 6 13 13 C 1.50703 * 109.47029 * 180.02562 * 12 10 9 14 14 C 1.38326 * 119.96036 * 269.72148 * 13 12 10 15 15 C 1.38280 * 120.13593 * 180.27023 * 14 13 12 16 16 C 1.38125 * 120.06813 * 0.02562 * 15 14 13 17 17 C 1.38857 * 119.92941 * 359.97438 * 16 15 14 18 18 O 1.35759 * 120.06714 * 179.97438 * 17 16 15 19 19 C 1.34831 * 116.99718 * 354.48542 * 18 17 16 20 20 H 1.07998 * 120.00057 * 5.06548 * 19 18 17 21 21 C 1.38654 * 119.99581 * 185.05723 * 19 18 17 22 22 N 1.31558 * 119.99951 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 120.00181 * 0.02562 * 21 19 18 24 24 H 1.48493 * 109.47207 * 89.99972 * 23 21 19 25 25 H 1.48498 * 109.46980 * 209.99927 * 23 21 19 26 26 H 1.48496 * 109.46974 * 329.99687 * 23 21 19 27 27 C 1.38074 * 119.96544 * 90.00097 * 13 12 10 28 28 H 1.09008 * 109.47034 * 60.00178 * 1 2 3 29 29 H 1.08993 * 109.47223 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47007 * 300.00666 * 1 2 3 31 31 H 0.96997 * 119.99959 * 179.97438 * 2 1 3 32 32 H 1.09003 * 109.47613 * 59.99548 * 5 3 2 33 33 H 1.09008 * 109.46936 * 299.99680 * 5 3 2 34 34 H 1.08996 * 109.47055 * 59.99931 * 8 6 5 35 35 H 1.08999 * 109.46649 * 180.02562 * 8 6 5 36 36 H 1.09003 * 109.46868 * 299.99806 * 8 6 5 37 37 H 0.97001 * 119.99807 * 334.99228 * 9 6 5 38 38 H 1.08996 * 109.47426 * 60.00133 * 12 10 9 39 39 H 1.08994 * 109.47220 * 299.99909 * 12 10 9 40 40 H 1.07995 * 119.93590 * 0.26096 * 14 13 12 41 41 H 1.07998 * 119.96668 * 180.02562 * 15 14 13 42 42 H 1.08000 * 120.03457 * 179.97438 * 16 15 14 43 43 H 0.96999 * 120.00512 * 179.97438 * 22 21 19 44 44 H 1.08000 * 120.03806 * 359.69747 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1672 -0.0006 6 6 4.1560 2.6097 -0.0011 7 1 3.7216 3.1488 0.8408 8 6 5.6808 2.6115 0.1241 9 7 3.7679 3.2644 -1.2529 10 6 3.6411 4.6053 -1.3009 11 8 3.8478 5.2699 -0.3076 12 6 3.2425 5.2788 -2.5887 13 6 3.1729 6.7691 -2.3756 14 6 1.9849 7.3552 -1.9773 15 6 1.9155 8.7229 -1.7861 16 6 3.0327 9.5082 -1.9930 17 6 4.2267 8.9228 -2.3929 18 8 5.3264 9.6921 -2.5975 19 6 5.1647 11.0276 -2.5068 20 1 4.2134 11.4367 -2.2002 21 6 6.2198 11.8756 -2.8070 22 7 6.0622 13.1786 -2.7180 23 14 7.8651 11.1678 -3.3377 24 1 7.8875 11.0216 -4.8152 25 1 8.9566 12.0812 -2.9140 26 1 8.0589 9.8382 -2.7056 27 6 4.2933 7.5486 -2.5838 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.9500 -0.8400 0.0004 32 1 4.0089 0.6535 -0.8908 33 1 4.0095 0.6532 0.8892 34 1 6.1151 2.0722 -0.7177 35 1 6.0441 3.6391 0.1242 36 1 5.9694 2.1244 1.0555 37 1 3.6023 2.7328 -2.0472 38 1 2.2664 4.9106 -2.9044 39 1 3.9811 5.0564 -3.3588 40 1 1.1098 6.7434 -1.8154 41 1 0.9867 9.1776 -1.4747 42 1 2.9778 10.5765 -1.8439 43 1 6.8004 13.7719 -2.9276 44 1 5.2206 7.0903 -2.8944 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361450566.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:51 Heat of formation + Delta-G solvation = -79.361378 kcal Electronic energy + Delta-G solvation = -26212.754265 eV Core-core repulsion = 22323.822693 eV Total energy + Delta-G solvation = -3888.931572 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.38188 -39.50759 -38.77033 -36.67505 -35.73622 -34.88750 -32.46082 -32.23550 -31.33593 -29.33786 -29.06234 -26.95727 -26.34969 -25.06060 -22.40492 -21.59853 -21.00927 -20.57528 -20.05063 -17.79853 -17.59958 -17.10561 -16.91355 -16.49181 -15.97603 -15.44856 -15.25213 -15.00079 -14.59438 -14.24320 -13.87060 -13.81638 -13.67334 -13.39489 -13.38559 -13.20367 -12.77069 -12.69871 -12.44084 -12.33077 -12.28818 -12.10570 -12.02963 -11.54257 -11.22545 -11.18712 -10.71756 -10.69979 -10.61687 -10.20698 -10.07171 -9.58706 -9.54286 -9.28307 -9.00055 -8.77680 -8.01113 -7.23114 -6.31704 -3.97951 2.14820 2.29425 2.42241 2.78360 2.95253 3.26672 3.30537 3.31824 3.47946 4.26678 4.32362 4.36301 4.59629 4.74206 4.79837 4.86026 5.02724 5.08345 5.09786 5.17852 5.19149 5.24271 5.35758 5.40190 5.47109 5.50738 5.71958 5.81107 5.88868 5.95910 5.99695 6.06049 6.24491 6.38025 6.53577 6.65826 6.92034 7.02332 7.23614 7.35188 7.44224 7.58757 7.73563 7.86138 7.92094 8.15189 8.49139 9.04155 9.68407 10.76347 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022577 B = 0.002556 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.897716 B =10951.182589 C =11845.456120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.741 5.741 3 C 0.504 3.496 4 O -0.518 6.518 5 C -0.150 4.150 6 C 0.158 3.842 7 H 0.095 0.905 8 C -0.165 4.165 9 N -0.726 5.726 10 C 0.521 3.479 11 O -0.520 6.520 12 C -0.094 4.094 13 C -0.032 4.032 14 C -0.185 4.185 15 C -0.077 4.077 16 C -0.218 4.218 17 C 0.160 3.840 18 O -0.221 6.221 19 C -0.386 4.386 20 H 0.106 0.894 21 C 0.061 3.939 22 N -0.883 5.883 23 Si 0.905 3.095 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.260 1.260 27 C -0.175 4.175 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.400 0.600 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.393 0.607 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.110 0.890 42 H 0.132 0.868 43 H 0.278 0.722 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.664 -31.442 2.405 32.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.394 5.394 3 C 0.290 3.710 4 O -0.392 6.392 5 C -0.191 4.191 6 C 0.053 3.947 7 H 0.113 0.887 8 C -0.223 4.223 9 N -0.379 5.379 10 C 0.308 3.692 11 O -0.394 6.394 12 C -0.134 4.134 13 C -0.033 4.033 14 C -0.204 4.204 15 C -0.095 4.095 16 C -0.237 4.237 17 C 0.108 3.892 18 O -0.127 6.127 19 C -0.462 4.462 20 H 0.123 0.877 21 C -0.141 4.141 22 N -0.522 5.522 23 Si 0.731 3.269 24 H -0.200 1.200 25 H -0.209 1.209 26 H -0.184 1.184 27 C -0.194 4.194 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.234 0.766 32 H 0.117 0.883 33 H 0.125 0.875 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.226 0.774 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.123 0.877 41 H 0.128 0.872 42 H 0.150 0.850 43 H 0.088 0.912 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.632 -29.981 3.075 30.860 hybrid contribution 0.684 -0.871 -0.533 1.229 sum -5.948 -30.853 2.542 31.524 Atomic orbital electron populations 1.21525 0.79635 1.02072 1.02492 1.45858 1.07827 1.08726 1.77009 1.20752 0.90312 0.83711 0.76252 1.90811 1.70170 1.30924 1.47319 1.22066 0.92248 0.99419 1.05323 1.20582 0.94452 0.90429 0.89259 0.88700 1.22207 0.94872 1.03498 1.01733 1.45884 1.72218 1.07189 1.12577 1.20574 0.76415 0.81567 0.90676 1.90741 1.48324 1.63776 1.36516 1.20580 1.03556 0.93555 0.95692 1.18670 0.93513 0.91996 0.99132 1.20448 0.97118 0.94769 1.08105 1.20735 0.97364 0.93438 0.97956 1.21284 0.93192 1.01132 1.08111 1.19004 0.86548 0.90484 0.93139 1.83569 1.30111 1.19381 1.79594 1.20766 1.01812 0.76882 1.46755 0.87692 1.24451 0.99121 0.94340 0.96196 1.69651 1.33380 1.01661 1.47498 0.86185 0.81757 0.79692 0.79298 1.19981 1.20884 1.18375 1.19927 0.98314 0.91182 1.09959 0.92183 0.90789 0.92238 0.76645 0.88334 0.87450 0.92431 0.91229 0.91720 0.77354 0.88466 0.88518 0.87703 0.87225 0.85042 0.91204 0.86895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.45 10.70 59.85 0.64 1.09 16 2 N -0.74 -3.78 5.71 -67.08 -0.38 -4.17 16 3 C 0.50 4.18 7.69 -10.99 -0.08 4.09 16 4 O -0.52 -7.01 15.35 5.56 0.09 -6.93 16 5 C -0.15 -0.82 5.24 -27.88 -0.15 -0.97 16 6 C 0.16 1.54 2.13 -67.93 -0.15 1.39 16 7 H 0.09 1.27 7.39 -51.93 -0.38 0.88 16 8 C -0.16 -1.43 9.48 37.16 0.35 -1.08 16 9 N -0.73 -7.88 4.22 -53.81 -0.23 -8.11 16 10 C 0.52 8.00 7.79 -10.99 -0.09 7.92 16 11 O -0.52 -10.58 15.70 5.56 0.09 -10.49 16 12 C -0.09 -1.32 5.83 -29.03 -0.17 -1.49 16 13 C -0.03 -0.61 4.37 -104.65 -0.46 -1.07 16 14 C -0.19 -3.55 9.70 -39.53 -0.38 -3.94 16 15 C -0.08 -1.56 10.04 -39.61 -0.40 -1.95 16 16 C -0.22 -5.13 9.17 -39.39 -0.36 -5.49 16 17 C 0.16 3.99 6.65 -39.11 -0.26 3.73 16 18 O -0.22 -6.18 8.59 0.02 0.00 -6.18 16 19 C -0.39 -11.41 9.95 30.89 0.31 -11.10 16 20 H 0.11 3.17 5.44 -52.49 -0.29 2.88 16 21 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 22 N -0.88 -26.39 13.96 55.48 0.77 -25.61 16 23 Si 0.90 22.52 28.62 -169.99 -4.86 17.66 16 24 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.26 -6.53 7.11 56.52 0.40 -6.13 16 27 C -0.17 -3.79 9.64 -39.40 -0.38 -4.17 16 28 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 29 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.40 0.69 8.83 -40.82 -0.36 0.33 16 32 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.11 0.35 8.14 -51.92 -0.42 -0.07 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.39 3.06 8.60 -40.82 -0.35 2.71 16 38 H 0.10 1.14 8.08 -51.93 -0.42 0.73 16 39 H 0.10 1.11 8.08 -51.93 -0.42 0.69 16 40 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 41 H 0.11 1.91 8.06 -52.49 -0.42 1.48 16 42 H 0.13 3.20 5.64 -52.49 -0.30 2.90 16 43 H 0.28 7.66 8.31 -40.82 -0.34 7.32 16 44 H 0.11 2.29 8.06 -52.49 -0.42 1.87 16 LS Contribution 377.03 15.07 5.68 5.68 Total: -1.00 -38.42 377.03 -6.81 -45.23 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -6.30 Total: 4.27 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -1.67 Total: -11.35 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.16 Total: -37.89 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: 0.17 Total: -23.60 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.86 Total: 17.66 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -38.42 -6.81 -45.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361450566.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.133 kcal (2) G-P(sol) polarization free energy of solvation -38.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds