Wall clock time and date at job start Tue Mar 31 2020 13:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34774 * 119.99768 * 2 1 4 4 O 1.21276 * 120.00622 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99692 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47452 * 179.97438 * 5 3 2 7 7 H 1.09003 * 109.46512 * 54.99890 * 6 5 3 8 8 C 1.52999 * 109.47326 * 174.99710 * 6 5 3 9 9 N 1.46497 * 109.47022 * 295.00191 * 6 5 3 10 10 C 1.34779 * 120.00029 * 154.99787 * 9 6 5 11 11 O 1.21280 * 119.99730 * 359.97438 * 10 9 6 12 12 C 1.50697 * 119.99832 * 179.97438 * 10 9 6 13 13 C 1.50703 * 109.47029 * 180.02562 * 12 10 9 14 14 C 1.38326 * 119.96036 * 269.72148 * 13 12 10 15 15 C 1.38280 * 120.13593 * 180.27023 * 14 13 12 16 16 C 1.38125 * 120.06813 * 0.02562 * 15 14 13 17 17 C 1.38857 * 119.92941 * 359.97438 * 16 15 14 18 18 O 1.35759 * 120.06714 * 179.97438 * 17 16 15 19 19 C 1.34831 * 116.99718 * 354.48542 * 18 17 16 20 20 H 1.07998 * 120.00057 * 5.06548 * 19 18 17 21 21 C 1.38654 * 119.99581 * 185.05723 * 19 18 17 22 22 N 1.31558 * 119.99951 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 120.00181 * 0.02562 * 21 19 18 24 24 H 1.48493 * 109.47207 * 89.99972 * 23 21 19 25 25 H 1.48498 * 109.46980 * 209.99927 * 23 21 19 26 26 H 1.48496 * 109.46974 * 329.99687 * 23 21 19 27 27 C 1.38074 * 119.96544 * 90.00097 * 13 12 10 28 28 H 1.09008 * 109.47034 * 60.00178 * 1 2 3 29 29 H 1.08993 * 109.47223 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47007 * 300.00666 * 1 2 3 31 31 H 0.96997 * 119.99959 * 179.97438 * 2 1 3 32 32 H 1.09003 * 109.47613 * 59.99548 * 5 3 2 33 33 H 1.09008 * 109.46936 * 299.99680 * 5 3 2 34 34 H 1.08996 * 109.47055 * 59.99931 * 8 6 5 35 35 H 1.08999 * 109.46649 * 180.02562 * 8 6 5 36 36 H 1.09003 * 109.46868 * 299.99806 * 8 6 5 37 37 H 0.97001 * 119.99807 * 334.99228 * 9 6 5 38 38 H 1.08996 * 109.47426 * 60.00133 * 12 10 9 39 39 H 1.08994 * 109.47220 * 299.99909 * 12 10 9 40 40 H 1.07995 * 119.93590 * 0.26096 * 14 13 12 41 41 H 1.07998 * 119.96668 * 180.02562 * 15 14 13 42 42 H 1.08000 * 120.03457 * 179.97438 * 16 15 14 43 43 H 0.96999 * 120.00512 * 179.97438 * 22 21 19 44 44 H 1.08000 * 120.03806 * 359.69747 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1672 -0.0006 6 6 4.1560 2.6097 -0.0011 7 1 3.7216 3.1488 0.8408 8 6 5.6808 2.6115 0.1241 9 7 3.7679 3.2644 -1.2529 10 6 3.6411 4.6053 -1.3009 11 8 3.8478 5.2699 -0.3076 12 6 3.2425 5.2788 -2.5887 13 6 3.1729 6.7691 -2.3756 14 6 1.9849 7.3552 -1.9773 15 6 1.9155 8.7229 -1.7861 16 6 3.0327 9.5082 -1.9930 17 6 4.2267 8.9228 -2.3929 18 8 5.3264 9.6921 -2.5975 19 6 5.1647 11.0276 -2.5068 20 1 4.2134 11.4367 -2.2002 21 6 6.2198 11.8756 -2.8070 22 7 6.0622 13.1786 -2.7180 23 14 7.8651 11.1678 -3.3377 24 1 7.8875 11.0216 -4.8152 25 1 8.9566 12.0812 -2.9140 26 1 8.0589 9.8382 -2.7056 27 6 4.2933 7.5486 -2.5838 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.9500 -0.8400 0.0004 32 1 4.0089 0.6535 -0.8908 33 1 4.0095 0.6532 0.8892 34 1 6.1151 2.0722 -0.7177 35 1 6.0441 3.6391 0.1242 36 1 5.9694 2.1244 1.0555 37 1 3.6023 2.7328 -2.0472 38 1 2.2664 4.9106 -2.9044 39 1 3.9811 5.0564 -3.3588 40 1 1.1098 6.7434 -1.8154 41 1 0.9867 9.1776 -1.4747 42 1 2.9778 10.5765 -1.8439 43 1 6.8004 13.7719 -2.9276 44 1 5.2206 7.0903 -2.8944 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361450566.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:50 Heat of formation + Delta-G solvation = -109.150642 kcal Electronic energy + Delta-G solvation = -26214.046024 eV Core-core repulsion = 22323.822693 eV Total energy + Delta-G solvation = -3890.223331 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.31559 -40.83960 -40.15415 -38.36559 -36.71952 -35.49526 -34.48492 -33.71476 -32.42672 -31.06560 -29.71839 -28.36283 -27.17327 -26.83609 -23.62862 -23.12269 -22.21188 -21.36199 -21.29128 -19.66246 -18.92032 -18.36999 -17.92078 -17.34978 -16.88991 -16.74391 -16.60091 -16.09924 -16.08717 -15.67502 -15.59472 -15.06582 -14.94597 -14.74979 -14.38483 -14.19849 -14.10620 -13.95277 -13.86371 -13.43531 -13.08701 -13.03998 -12.88025 -12.81399 -12.75604 -12.50964 -12.44135 -12.35769 -11.94281 -11.93563 -11.32387 -10.93175 -10.89464 -10.82331 -10.08783 -9.96033 -9.67708 -9.08060 -8.50320 -6.23321 0.47756 0.68119 1.29296 1.34500 1.51401 1.71052 1.80467 2.28161 2.31503 2.33979 2.78818 3.03827 3.14010 3.68779 3.77647 3.87958 4.05334 4.16833 4.26750 4.28431 4.39688 4.44085 4.53062 4.55572 4.61168 4.62377 4.68220 4.68831 4.73922 4.83503 4.95225 4.98464 5.12711 5.24029 5.34489 5.38328 5.50589 5.63556 5.65134 5.71493 5.75253 5.90115 6.23240 6.61490 6.69398 6.83577 7.36854 7.43801 7.57905 8.61514 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022577 B = 0.002556 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.897716 B =10951.182589 C =11845.456120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.724 5.724 3 C 0.498 3.502 4 O -0.580 6.580 5 C -0.136 4.136 6 C 0.153 3.847 7 H 0.050 0.950 8 C -0.158 4.158 9 N -0.705 5.705 10 C 0.517 3.483 11 O -0.583 6.583 12 C -0.091 4.091 13 C -0.026 4.026 14 C -0.175 4.175 15 C -0.078 4.078 16 C -0.240 4.240 17 C 0.121 3.879 18 O -0.245 6.245 19 C -0.401 4.401 20 H 0.079 0.921 21 C 0.008 3.992 22 N -0.923 5.923 23 Si 0.973 3.027 24 H -0.261 1.261 25 H -0.265 1.265 26 H -0.267 1.267 27 C -0.179 4.179 28 H 0.046 0.954 29 H 0.109 0.891 30 H 0.040 0.960 31 H 0.420 0.580 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.083 0.917 35 H 0.028 0.972 36 H 0.085 0.915 37 H 0.412 0.588 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.109 0.891 43 H 0.285 0.715 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.520 -36.665 1.370 37.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.377 5.377 3 C 0.285 3.715 4 O -0.459 6.459 5 C -0.176 4.176 6 C 0.048 3.952 7 H 0.068 0.932 8 C -0.216 4.216 9 N -0.358 5.358 10 C 0.304 3.696 11 O -0.462 6.462 12 C -0.130 4.130 13 C -0.027 4.027 14 C -0.193 4.193 15 C -0.096 4.096 16 C -0.260 4.260 17 C 0.072 3.928 18 O -0.153 6.153 19 C -0.477 4.477 20 H 0.096 0.904 21 C -0.190 4.190 22 N -0.564 5.564 23 Si 0.795 3.205 24 H -0.186 1.186 25 H -0.190 1.190 26 H -0.191 1.191 27 C -0.198 4.198 28 H 0.065 0.935 29 H 0.127 0.873 30 H 0.059 0.941 31 H 0.257 0.743 32 H 0.156 0.844 33 H 0.156 0.844 34 H 0.102 0.898 35 H 0.047 0.953 36 H 0.104 0.896 37 H 0.249 0.751 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.156 0.844 41 H 0.157 0.843 42 H 0.127 0.873 43 H 0.095 0.905 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.513 -35.336 2.016 35.988 hybrid contribution 0.369 0.472 -0.129 0.613 sum -6.144 -34.864 1.887 35.452 Atomic orbital electron populations 1.21586 0.79689 1.03871 1.00918 1.45755 1.07930 1.08891 1.75170 1.21269 0.91475 0.83508 0.75216 1.90795 1.71490 1.33171 1.50493 1.22040 0.90103 0.96714 1.08710 1.20656 0.95066 0.92416 0.87110 0.93171 1.22140 0.93860 1.01530 1.04068 1.45729 1.70178 1.05956 1.13891 1.20782 0.75862 0.82831 0.90130 1.90731 1.51525 1.65357 1.38568 1.20685 1.06556 0.89749 0.96033 1.19214 0.92221 0.94753 0.96468 1.20965 0.98415 0.94470 1.05490 1.21082 0.97333 0.94097 0.97054 1.21308 0.94400 1.00575 1.09673 1.19566 0.86597 0.91749 0.94898 1.83508 1.31577 1.18386 1.81825 1.20720 1.01344 0.78189 1.47472 0.90369 1.25312 1.02793 0.94649 0.96229 1.69733 1.34885 1.02804 1.49015 0.85190 0.77340 0.78602 0.79382 1.18564 1.18981 1.19143 1.20246 0.99955 0.89951 1.09668 0.93526 0.87271 0.94143 0.74259 0.84350 0.84374 0.89780 0.95321 0.89640 0.75117 0.85169 0.85252 0.84376 0.84311 0.87312 0.90539 0.85731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.68 10.70 127.77 1.37 2.05 16 2 N -0.72 -5.02 5.71 -484.52 -2.77 -7.78 16 3 C 0.50 6.94 7.69 87.66 0.67 7.62 16 4 O -0.58 -15.19 15.35 -3.02 -0.05 -15.23 16 5 C -0.14 -0.94 5.24 29.85 0.16 -0.78 16 6 C 0.15 2.68 2.13 44.99 0.10 2.77 16 7 H 0.05 1.37 7.39 -2.39 -0.02 1.35 16 8 C -0.16 -2.39 9.48 71.98 0.68 -1.71 16 9 N -0.71 -13.59 4.22 -442.54 -1.87 -15.45 16 10 C 0.52 15.07 7.79 87.66 0.68 15.75 16 11 O -0.58 -24.02 15.70 -3.03 -0.05 -24.06 16 12 C -0.09 -2.27 5.83 29.10 0.17 -2.10 16 13 C -0.03 -0.94 4.37 -19.88 -0.09 -1.03 16 14 C -0.17 -6.38 9.70 22.30 0.22 -6.16 16 15 C -0.08 -3.14 10.04 22.25 0.22 -2.92 16 16 C -0.24 -11.90 9.17 22.39 0.21 -11.69 16 17 C 0.12 6.29 6.65 22.58 0.15 6.44 16 18 O -0.25 -14.40 8.59 -22.85 -0.20 -14.60 16 19 C -0.40 -25.16 9.95 67.92 0.68 -24.48 16 20 H 0.08 5.15 5.44 -2.91 -0.02 5.13 16 21 C 0.01 0.50 5.49 84.83 0.47 0.97 16 22 N -0.92 -57.38 13.96 21.61 0.30 -57.08 16 23 Si 0.97 47.60 28.62 68.60 1.96 49.56 16 24 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 25 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 26 H -0.27 -13.22 7.11 99.48 0.71 -12.52 16 27 C -0.18 -7.80 9.64 22.39 0.22 -7.59 16 28 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 29 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 30 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.42 -0.46 8.83 -92.71 -0.82 -1.28 16 32 H 0.14 -0.06 8.14 -2.39 -0.02 -0.08 16 33 H 0.14 0.20 8.14 -2.38 -0.02 0.18 16 34 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.41 4.75 8.60 -92.71 -0.80 3.96 16 38 H 0.13 2.45 8.08 -2.39 -0.02 2.43 16 39 H 0.13 2.42 8.08 -2.39 -0.02 2.40 16 40 H 0.14 4.17 8.06 -2.91 -0.02 4.14 16 41 H 0.14 4.69 8.06 -2.91 -0.02 4.67 16 42 H 0.11 5.79 5.64 -2.91 -0.02 5.78 16 43 H 0.28 16.17 8.31 -92.71 -0.77 15.39 16 44 H 0.12 5.02 8.06 -2.91 -0.02 4.99 16 Total: -1.00 -92.87 377.03 2.66 -90.22 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -0.58 Total: 17.29 kcal Atomic # 6 Polarization: -28.75 SS G_CDS: 5.90 Total: -22.85 kcal Atomic # 7 Polarization: -75.99 SS G_CDS: -4.33 Total: -80.32 kcal Atomic # 8 Polarization: -53.61 SS G_CDS: -0.29 Total: -53.90 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 1.96 Total: 49.56 kcal Total: -92.87 2.66 -90.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361450566.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.932 kcal (2) G-P(sol) polarization free energy of solvation -92.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds