Wall clock time and date at job start Tue Mar 31 2020 12:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 109.52152 * 2 1 4 4 C 1.53037 * 109.49550 * 120.07832 * 2 1 3 5 5 C 1.53040 * 109.53490 * 181.31528 * 4 2 1 6 6 H 1.09000 * 109.49740 * 58.58830 * 5 4 2 7 7 O 1.42907 * 109.49907 * 178.68814 * 5 4 2 8 8 C 1.53198 * 109.31433 * 298.63744 * 5 4 2 9 9 N 1.46915 * 108.77363 * 54.63292 * 8 5 4 10 10 C 1.34776 * 120.62902 * 126.41604 * 9 8 5 11 11 O 1.21595 * 120.00145 * 175.64430 * 10 9 8 12 12 N 1.34780 * 120.00240 * 355.64409 * 10 9 8 13 13 C 1.39938 * 120.00273 * 185.89157 * 12 10 9 14 14 C 1.38964 * 120.03899 * 33.91759 * 13 12 10 15 15 C 1.38153 * 120.06927 * 179.76617 * 14 13 12 16 16 C 1.38175 * 120.13681 * 0.51137 * 15 14 13 17 17 C 1.38899 * 120.06787 * 359.74563 * 16 15 14 18 18 O 1.35752 * 120.03241 * 180.02562 * 17 16 15 19 19 C 1.34831 * 117.00383 * 173.99805 * 18 17 16 20 20 H 1.08006 * 119.99805 * 354.47886 * 19 18 17 21 21 C 1.38652 * 120.00423 * 174.47282 * 19 18 17 22 22 N 1.31553 * 120.00147 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99585 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.46870 * 90.00244 * 23 21 19 25 25 H 1.48505 * 109.47039 * 209.99766 * 23 21 19 26 26 H 1.48496 * 109.47506 * 329.99700 * 23 21 19 27 27 C 1.38707 * 120.03689 * 214.19373 * 13 12 10 28 28 C 1.46926 * 118.74372 * 306.39325 * 9 8 5 29 29 H 1.09000 * 109.46748 * 299.91973 * 1 2 3 30 30 H 1.09000 * 109.47008 * 59.91685 * 1 2 3 31 31 H 1.09000 * 109.47155 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.46615 * 301.33586 * 4 2 1 33 33 H 1.09002 * 109.45685 * 61.30077 * 4 2 1 34 34 H 0.96692 * 114.00053 * 180.02562 * 7 5 4 35 35 H 1.09000 * 109.58290 * 294.84585 * 8 5 4 36 36 H 1.09004 * 109.70279 * 174.49649 * 8 5 4 37 37 H 0.97005 * 119.99296 * 5.88440 * 12 10 9 38 38 H 1.08005 * 119.96000 * 0.02562 * 14 13 12 39 39 H 1.08002 * 119.93375 * 180.27395 * 15 14 13 40 40 H 1.07995 * 119.96241 * 179.71592 * 16 15 14 41 41 H 0.97000 * 120.00121 * 180.02562 * 22 21 19 42 42 H 1.08003 * 120.06583 * 359.97438 * 27 13 12 43 43 H 1.09001 * 109.58653 * 293.82222 * 28 9 8 44 44 H 1.08999 * 109.70652 * 173.46921 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7230 1.2484 5 6 3.5708 -0.6950 1.2660 6 1 3.9159 0.3389 1.2540 7 8 4.0463 -1.3436 2.4473 8 6 4.1053 -1.4267 0.0307 9 7 3.5046 -0.8292 -1.1695 10 6 4.2811 -0.3865 -2.1783 11 8 3.7709 0.0331 -3.1992 12 7 5.6231 -0.4088 -2.0555 13 6 6.4262 0.1629 -3.0487 14 6 5.9888 1.2900 -3.7337 15 6 6.7832 1.8578 -4.7110 16 6 8.0101 1.3012 -5.0177 17 6 8.4507 0.1715 -4.3403 18 8 9.6564 -0.3746 -4.6418 19 6 10.0791 -1.3923 -3.8650 20 1 9.5093 -1.6790 -2.9934 21 6 11.2450 -2.0709 -4.1851 22 7 11.6571 -3.0643 -3.4274 23 14 12.2307 -1.5746 -5.6923 24 1 13.2294 -0.5432 -5.3130 25 1 12.9312 -2.7643 -6.2395 26 1 11.3152 -1.0220 -6.7226 27 6 7.6574 -0.3982 -3.3544 28 6 2.0413 -0.7238 -1.2496 29 1 -0.3633 0.5126 0.8907 30 1 -0.3633 0.5151 -0.8892 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6582 -0.2245 2.1389 33 1 1.6967 -1.7572 1.2353 34 1 5.0099 -1.3626 2.5248 35 1 3.8376 -2.4818 0.0868 36 1 5.1898 -1.3269 -0.0150 37 1 6.0322 -0.8212 -1.2786 38 1 5.0284 1.7250 -3.4990 39 1 6.4430 2.7364 -5.2390 40 1 8.6269 1.7447 -5.7854 41 1 12.4730 -3.5388 -3.6511 42 1 7.9978 -1.2765 -2.8262 43 1 1.6052 -1.7216 -1.2980 44 1 1.7616 -0.1593 -2.1390 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364077383.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:43 Heat of formation + Delta-G solvation = -70.699965 kcal Electronic energy + Delta-G solvation = -26895.498105 eV Core-core repulsion = 23006.942120 eV Total energy + Delta-G solvation = -3888.555985 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.91791 -39.33204 -38.46455 -36.79121 -36.10972 -34.63161 -33.72353 -32.35692 -30.60451 -29.50710 -28.79865 -27.12581 -25.75628 -25.17464 -22.45669 -22.19327 -21.77894 -20.58038 -19.61643 -18.68506 -17.82407 -17.51898 -17.51164 -16.23977 -15.80150 -15.41999 -15.23281 -15.13236 -14.75137 -14.64173 -14.30513 -13.85461 -13.77404 -13.56841 -13.32618 -13.21783 -13.10437 -12.40140 -12.35524 -12.29317 -12.22449 -12.15589 -11.68830 -11.31262 -11.24915 -11.07984 -10.95217 -10.87762 -10.82658 -10.57427 -10.29620 -10.04494 -9.70244 -9.52084 -8.87581 -8.83898 -7.79751 -7.28947 -6.44187 -4.11305 1.94559 2.27486 2.46287 3.17421 3.22905 3.24870 3.40151 3.55956 3.90477 4.22568 4.28031 4.37753 4.48058 4.51753 4.64451 4.78095 4.85214 4.92520 5.07366 5.14637 5.22237 5.23922 5.37755 5.45341 5.51653 5.57596 5.63351 5.75347 5.79436 5.90889 5.95859 5.98106 6.08784 6.16323 6.26255 6.43630 6.67922 6.89871 7.08820 7.19858 7.21972 7.23716 7.58980 7.75181 7.86606 8.01113 8.53244 8.91576 9.54193 10.63592 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018685 B = 0.002955 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.180345 B = 9474.249018 C =10572.612837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.105 4.105 3 H 0.077 0.923 4 C -0.107 4.107 5 C 0.092 3.908 6 H 0.062 0.938 7 O -0.563 6.563 8 C 0.078 3.922 9 N -0.626 5.626 10 C 0.708 3.292 11 O -0.567 6.567 12 N -0.682 5.682 13 C 0.197 3.803 14 C -0.197 4.197 15 C -0.063 4.063 16 C -0.202 4.202 17 C 0.175 3.825 18 O -0.216 6.216 19 C -0.389 4.389 20 H 0.104 0.896 21 C 0.063 3.937 22 N -0.881 5.881 23 Si 0.905 3.095 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.259 1.259 27 C -0.245 4.245 28 C 0.132 3.868 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.382 0.618 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.401 0.599 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.279 0.721 42 H 0.135 0.865 43 H 0.067 0.933 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.070 5.092 9.804 21.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.125 4.125 3 H 0.096 0.904 4 C -0.145 4.145 5 C 0.032 3.968 6 H 0.080 0.920 7 O -0.368 6.368 8 C -0.046 4.046 9 N -0.365 5.365 10 C 0.411 3.589 11 O -0.443 6.443 12 N -0.331 5.331 13 C 0.103 3.897 14 C -0.218 4.218 15 C -0.082 4.082 16 C -0.222 4.222 17 C 0.123 3.877 18 O -0.121 6.121 19 C -0.465 4.465 20 H 0.121 0.879 21 C -0.140 4.140 22 N -0.519 5.519 23 Si 0.731 3.269 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.183 1.183 27 C -0.267 4.267 28 C 0.009 3.991 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.230 0.770 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.239 0.761 38 H 0.139 0.861 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.089 0.911 42 H 0.153 0.847 43 H 0.086 0.914 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -18.775 5.181 9.058 21.480 hybrid contribution 1.407 -0.340 -0.053 1.449 sum -17.368 4.841 9.005 20.154 Atomic orbital electron populations 1.21731 0.93649 1.02344 1.02363 1.21504 0.96465 1.00268 0.94233 0.90419 1.21545 0.92727 1.01959 0.98231 1.22136 0.95579 0.95362 0.83699 0.92033 1.86529 1.27308 1.81102 1.41820 1.22415 0.98250 0.98650 0.85292 1.47150 1.06679 1.65085 1.17574 1.15770 0.81253 0.78724 0.83193 1.90944 1.72861 1.52527 1.27919 1.42793 1.04383 1.61349 1.24594 1.17206 0.90086 0.92169 0.90224 1.20608 1.01548 0.97580 1.02036 1.20524 0.92975 0.98437 0.96302 1.20235 0.98565 0.98150 1.05215 1.18785 0.84965 0.91755 0.92225 1.83618 1.28962 1.46493 1.53022 1.20711 1.09053 1.09416 1.07274 0.87879 1.24459 0.96511 0.94431 0.98567 1.69639 1.23701 1.20131 1.38453 0.86176 0.80038 0.78132 0.82557 1.19845 1.20863 1.18278 1.20891 0.96347 1.04402 1.05088 1.21596 0.77621 1.00929 0.98962 0.92137 0.91963 0.92247 0.90799 0.90853 0.76987 0.90162 0.90151 0.76107 0.86141 0.86437 0.86376 0.91066 0.84742 0.91447 0.88344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 9.20 37.16 0.34 -0.51 16 2 C -0.11 -0.80 2.87 -90.50 -0.26 -1.06 16 3 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.11 -0.81 4.82 -26.69 -0.13 -0.94 16 5 C 0.09 0.74 3.62 -26.61 -0.10 0.65 16 6 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 7 O -0.56 -4.54 13.32 -35.23 -0.47 -5.01 16 8 C 0.08 0.69 6.05 -3.71 -0.02 0.67 16 9 N -0.63 -7.16 2.97 -178.50 -0.53 -7.69 16 10 C 0.71 10.98 8.03 -86.92 -0.70 10.29 16 11 O -0.57 -10.71 13.53 5.28 0.07 -10.64 16 12 N -0.68 -10.59 5.25 -14.24 -0.07 -10.66 16 13 C 0.20 3.74 6.26 -83.71 -0.52 3.22 16 14 C -0.20 -3.68 8.65 -39.34 -0.34 -4.02 16 15 C -0.06 -1.14 10.03 -39.64 -0.40 -1.54 16 16 C -0.20 -4.05 9.99 -39.36 -0.39 -4.44 16 17 C 0.18 4.04 6.64 -39.14 -0.26 3.78 16 18 O -0.22 -5.64 8.58 0.04 0.00 -5.64 16 19 C -0.39 -10.77 9.90 30.89 0.31 -10.46 16 20 H 0.10 2.89 5.53 -52.48 -0.29 2.60 16 21 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 22 N -0.88 -25.07 13.96 55.48 0.77 -24.29 16 23 Si 0.91 21.51 28.62 -169.99 -4.86 16.65 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.26 -6.20 7.11 56.52 0.40 -5.80 16 27 C -0.25 -5.25 9.04 -39.21 -0.35 -5.61 16 28 C 0.13 1.28 5.70 -3.71 -0.02 1.26 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.38 1.71 9.08 45.56 0.41 2.12 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.64 5.57 -51.93 -0.29 0.35 16 37 H 0.40 5.09 6.28 -40.82 -0.26 4.84 16 38 H 0.12 2.23 6.48 -52.48 -0.34 1.89 16 39 H 0.12 1.73 8.06 -52.49 -0.42 1.30 16 40 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 41 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.13 2.96 5.72 -52.48 -0.30 2.66 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.10 1.11 7.04 -51.93 -0.37 0.74 16 LS Contribution 357.26 15.07 5.38 5.38 Total: -1.00 -32.92 357.26 -7.87 -40.79 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -5.21 Total: 8.18 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -2.94 Total: -7.06 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.17 Total: -42.64 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.40 Total: -21.29 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.86 Total: 16.65 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.92 -7.87 -40.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364077383.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.913 kcal (2) G-P(sol) polarization free energy of solvation -32.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds