Wall clock time and date at job start Tue Mar 31 2020 12:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 109.52152 * 2 1 4 4 C 1.53037 * 109.49550 * 120.07832 * 2 1 3 5 5 C 1.53040 * 109.53490 * 181.31528 * 4 2 1 6 6 H 1.09000 * 109.49740 * 58.58830 * 5 4 2 7 7 O 1.42907 * 109.49907 * 178.68814 * 5 4 2 8 8 C 1.53198 * 109.31433 * 298.63744 * 5 4 2 9 9 N 1.46915 * 108.77363 * 54.63292 * 8 5 4 10 10 C 1.34776 * 120.62902 * 126.41604 * 9 8 5 11 11 O 1.21595 * 120.00145 * 175.64430 * 10 9 8 12 12 N 1.34780 * 120.00240 * 355.64409 * 10 9 8 13 13 C 1.39938 * 120.00273 * 185.89157 * 12 10 9 14 14 C 1.38964 * 120.03899 * 33.91759 * 13 12 10 15 15 C 1.38153 * 120.06927 * 179.76617 * 14 13 12 16 16 C 1.38175 * 120.13681 * 0.51137 * 15 14 13 17 17 C 1.38899 * 120.06787 * 359.74563 * 16 15 14 18 18 O 1.35752 * 120.03241 * 180.02562 * 17 16 15 19 19 C 1.34831 * 117.00383 * 173.99805 * 18 17 16 20 20 H 1.08006 * 119.99805 * 354.47886 * 19 18 17 21 21 C 1.38652 * 120.00423 * 174.47282 * 19 18 17 22 22 N 1.31553 * 120.00147 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99585 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.46870 * 90.00244 * 23 21 19 25 25 H 1.48505 * 109.47039 * 209.99766 * 23 21 19 26 26 H 1.48496 * 109.47506 * 329.99700 * 23 21 19 27 27 C 1.38707 * 120.03689 * 214.19373 * 13 12 10 28 28 C 1.46926 * 118.74372 * 306.39325 * 9 8 5 29 29 H 1.09000 * 109.46748 * 299.91973 * 1 2 3 30 30 H 1.09000 * 109.47008 * 59.91685 * 1 2 3 31 31 H 1.09000 * 109.47155 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.46615 * 301.33586 * 4 2 1 33 33 H 1.09002 * 109.45685 * 61.30077 * 4 2 1 34 34 H 0.96692 * 114.00053 * 180.02562 * 7 5 4 35 35 H 1.09000 * 109.58290 * 294.84585 * 8 5 4 36 36 H 1.09004 * 109.70279 * 174.49649 * 8 5 4 37 37 H 0.97005 * 119.99296 * 5.88440 * 12 10 9 38 38 H 1.08005 * 119.96000 * 0.02562 * 14 13 12 39 39 H 1.08002 * 119.93375 * 180.27395 * 15 14 13 40 40 H 1.07995 * 119.96241 * 179.71592 * 16 15 14 41 41 H 0.97000 * 120.00121 * 180.02562 * 22 21 19 42 42 H 1.08003 * 120.06583 * 359.97438 * 27 13 12 43 43 H 1.09001 * 109.58653 * 293.82222 * 28 9 8 44 44 H 1.08999 * 109.70652 * 173.46921 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7230 1.2484 5 6 3.5708 -0.6950 1.2660 6 1 3.9159 0.3389 1.2540 7 8 4.0463 -1.3436 2.4473 8 6 4.1053 -1.4267 0.0307 9 7 3.5046 -0.8292 -1.1695 10 6 4.2811 -0.3865 -2.1783 11 8 3.7709 0.0331 -3.1992 12 7 5.6231 -0.4088 -2.0555 13 6 6.4262 0.1629 -3.0487 14 6 5.9888 1.2900 -3.7337 15 6 6.7832 1.8578 -4.7110 16 6 8.0101 1.3012 -5.0177 17 6 8.4507 0.1715 -4.3403 18 8 9.6564 -0.3746 -4.6418 19 6 10.0791 -1.3923 -3.8650 20 1 9.5093 -1.6790 -2.9934 21 6 11.2450 -2.0709 -4.1851 22 7 11.6571 -3.0643 -3.4274 23 14 12.2307 -1.5746 -5.6923 24 1 13.2294 -0.5432 -5.3130 25 1 12.9312 -2.7643 -6.2395 26 1 11.3152 -1.0220 -6.7226 27 6 7.6574 -0.3982 -3.3544 28 6 2.0413 -0.7238 -1.2496 29 1 -0.3633 0.5126 0.8907 30 1 -0.3633 0.5151 -0.8892 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6582 -0.2245 2.1389 33 1 1.6967 -1.7572 1.2353 34 1 5.0099 -1.3626 2.5248 35 1 3.8376 -2.4818 0.0868 36 1 5.1898 -1.3269 -0.0150 37 1 6.0322 -0.8212 -1.2786 38 1 5.0284 1.7250 -3.4990 39 1 6.4430 2.7364 -5.2390 40 1 8.6269 1.7447 -5.7854 41 1 12.4730 -3.5388 -3.6511 42 1 7.9978 -1.2765 -2.8262 43 1 1.6052 -1.7216 -1.2980 44 1 1.7616 -0.1593 -2.1390 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364077383.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:42 Heat of formation + Delta-G solvation = -93.609903 kcal Electronic energy + Delta-G solvation = -26896.491554 eV Core-core repulsion = 23006.942120 eV Total energy + Delta-G solvation = -3889.549434 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.07932 -40.81023 -39.61437 -38.24091 -36.95779 -35.91494 -34.76652 -34.34388 -31.31840 -31.07378 -30.35983 -27.81138 -27.23330 -26.59522 -23.56922 -23.41232 -23.11850 -21.57283 -20.76764 -20.04988 -19.53356 -19.00432 -18.17308 -17.50379 -17.05344 -16.67532 -16.63199 -16.08936 -15.91656 -15.77075 -15.67962 -15.56511 -15.34031 -14.72676 -14.46843 -14.20800 -14.13889 -13.99238 -13.89502 -13.28757 -13.06697 -12.86984 -12.84463 -12.80834 -12.62921 -12.50447 -12.10019 -11.90918 -11.85942 -11.63357 -11.49597 -11.37602 -11.24489 -11.11361 -10.83644 -9.82258 -9.37804 -8.91045 -8.49658 -6.22093 0.40163 0.65009 1.32862 1.35931 1.38269 1.53514 1.91893 2.29172 2.57846 2.77949 3.07349 3.13281 3.21364 3.58901 3.69244 3.81599 3.97132 4.09375 4.13918 4.23032 4.30724 4.40679 4.46111 4.56855 4.60973 4.62380 4.68102 4.69329 4.82711 4.90327 4.91285 5.03374 5.14970 5.20416 5.26417 5.34516 5.37897 5.46261 5.49642 5.62121 5.73672 5.79247 5.91115 6.21605 6.65699 6.77480 6.85081 7.29849 7.58335 8.61581 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018685 B = 0.002955 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.180345 B = 9474.249018 C =10572.612837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.095 4.095 3 H 0.069 0.931 4 C -0.105 4.105 5 C 0.099 3.901 6 H 0.059 0.941 7 O -0.572 6.572 8 C 0.075 3.925 9 N -0.616 5.616 10 C 0.705 3.295 11 O -0.603 6.603 12 N -0.678 5.678 13 C 0.199 3.801 14 C -0.191 4.191 15 C -0.051 4.051 16 C -0.202 4.202 17 C 0.142 3.858 18 O -0.239 6.239 19 C -0.397 4.397 20 H 0.083 0.917 21 C 0.012 3.988 22 N -0.921 5.921 23 Si 0.967 3.033 24 H -0.264 1.264 25 H -0.270 1.270 26 H -0.263 1.263 27 C -0.256 4.256 28 C 0.127 3.873 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.397 0.603 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.413 0.587 38 H 0.129 0.871 39 H 0.160 0.840 40 H 0.135 0.865 41 H 0.284 0.716 42 H 0.119 0.881 43 H 0.080 0.920 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.598 6.315 9.954 22.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.114 4.114 3 H 0.088 0.912 4 C -0.143 4.143 5 C 0.038 3.962 6 H 0.077 0.923 7 O -0.380 6.380 8 C -0.048 4.048 9 N -0.354 5.354 10 C 0.407 3.593 11 O -0.482 6.482 12 N -0.327 5.327 13 C 0.104 3.896 14 C -0.212 4.212 15 C -0.069 4.069 16 C -0.222 4.222 17 C 0.092 3.908 18 O -0.147 6.147 19 C -0.474 4.474 20 H 0.101 0.899 21 C -0.186 4.186 22 N -0.562 5.562 23 Si 0.790 3.210 24 H -0.189 1.189 25 H -0.195 1.195 26 H -0.188 1.188 27 C -0.278 4.278 28 C 0.005 3.995 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.247 0.753 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.253 0.747 38 H 0.147 0.853 39 H 0.178 0.822 40 H 0.153 0.847 41 H 0.094 0.906 42 H 0.136 0.864 43 H 0.099 0.901 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -20.343 6.401 9.275 23.256 hybrid contribution 1.602 -0.631 0.020 1.722 sum -18.741 5.770 9.295 21.700 Atomic orbital electron populations 1.21717 0.92155 1.03014 1.02868 1.21411 0.97566 0.99383 0.93082 0.91207 1.21547 0.92336 1.02146 0.98265 1.22040 0.95926 0.94982 0.83205 0.92260 1.86506 1.28925 1.81043 1.41503 1.22606 0.98631 0.99031 0.84553 1.47210 1.07175 1.63799 1.17193 1.15907 0.81081 0.78709 0.83592 1.90909 1.73397 1.54316 1.29602 1.42704 1.04497 1.61235 1.24308 1.17246 0.89505 0.92149 0.90673 1.20905 1.01725 0.96953 1.01601 1.20973 0.91531 0.98987 0.95404 1.20542 0.99489 0.97065 1.05109 1.19321 0.84761 0.93049 0.93634 1.83562 1.30819 1.46798 1.53481 1.20682 1.09339 1.10043 1.07298 0.89942 1.25234 0.97488 0.94511 1.01397 1.69714 1.24680 1.21536 1.40267 0.85256 0.78555 0.78292 0.78909 1.18871 1.19508 1.18773 1.20844 0.97429 1.04300 1.05185 1.21788 0.76471 1.01774 0.99489 0.91149 0.91974 0.91510 0.90212 0.90586 0.75276 0.89364 0.89537 0.74674 0.85324 0.82228 0.84679 0.90601 0.86361 0.90132 0.89991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.20 71.98 0.66 -0.70 16 2 C -0.09 -1.27 2.87 -10.72 -0.03 -1.30 16 3 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 4 C -0.11 -1.37 4.82 30.62 0.15 -1.22 16 5 C 0.10 1.40 3.62 30.67 0.11 1.51 16 6 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 7 O -0.57 -8.12 13.32 -148.98 -1.98 -10.10 16 8 C 0.08 1.21 6.05 86.37 0.52 1.73 16 9 N -0.62 -13.38 2.97 -836.91 -2.49 -15.87 16 10 C 0.70 21.31 8.03 179.05 1.44 22.75 16 11 O -0.60 -22.41 13.53 -4.02 -0.05 -22.47 16 12 N -0.68 -20.70 5.25 -317.22 -1.67 -22.37 16 13 C 0.20 7.49 6.26 38.13 0.24 7.73 16 14 C -0.19 -6.80 8.65 22.42 0.19 -6.60 16 15 C -0.05 -1.67 10.03 22.23 0.22 -1.45 16 16 C -0.20 -7.81 9.99 22.41 0.22 -7.59 16 17 C 0.14 6.63 6.64 22.56 0.15 6.78 16 18 O -0.24 -12.79 8.58 -22.77 -0.20 -12.98 16 19 C -0.40 -22.86 9.90 67.92 0.67 -22.19 16 20 H 0.08 4.91 5.53 -2.91 -0.02 4.90 16 21 C 0.01 0.70 5.49 84.83 0.47 1.17 16 22 N -0.92 -53.89 13.96 21.61 0.30 -53.59 16 23 Si 0.97 44.81 28.62 68.60 1.96 46.77 16 24 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 25 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 26 H -0.26 -12.26 7.11 99.48 0.71 -11.55 16 27 C -0.26 -11.20 9.04 22.51 0.20 -10.99 16 28 C 0.13 2.30 5.70 86.36 0.49 2.79 16 29 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.08 0.97 8.14 -2.39 -0.02 0.96 16 34 H 0.40 2.84 9.08 -74.06 -0.67 2.17 16 35 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.09 1.27 5.57 -2.38 -0.01 1.25 16 37 H 0.41 10.35 6.28 -92.70 -0.58 9.77 16 38 H 0.13 4.47 6.48 -2.91 -0.02 4.45 16 39 H 0.16 3.95 8.06 -2.91 -0.02 3.93 16 40 H 0.14 4.70 8.06 -2.91 -0.02 4.68 16 41 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 42 H 0.12 5.51 5.72 -2.91 -0.02 5.49 16 43 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.08 1.80 7.04 -2.39 -0.02 1.78 16 Total: -1.00 -72.13 357.26 1.38 -70.75 By element: Atomic # 1 Polarization: 27.65 SS G_CDS: -0.21 Total: 27.45 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: 5.71 Total: -7.59 kcal Atomic # 7 Polarization: -87.97 SS G_CDS: -3.85 Total: -91.82 kcal Atomic # 8 Polarization: -43.32 SS G_CDS: -2.23 Total: -45.55 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.96 Total: 46.77 kcal Total: -72.13 1.38 -70.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364077383.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.864 kcal (2) G-P(sol) polarization free energy of solvation -72.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds