Wall clock time and date at job start Tue Mar 31 2020 12:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.99725 * 2 1 4 4 C 1.54333 * 109.77593 * 121.15585 * 2 1 3 5 5 H 1.08997 * 110.51983 * 215.80871 * 4 2 1 6 6 O 1.42907 * 110.85376 * 339.03449 * 4 2 1 7 7 C 1.55161 * 103.01824 * 97.50076 * 4 2 1 8 8 C 1.54903 * 101.58081 * 35.30477 * 7 4 2 9 9 N 1.47021 * 109.88566 * 238.89810 * 2 1 3 10 10 C 1.34774 * 125.64914 * 59.56033 * 9 2 1 11 11 O 1.21592 * 119.99660 * 359.71434 * 10 9 2 12 12 N 1.34767 * 120.00163 * 179.71843 * 10 9 2 13 13 C 1.46506 * 120.00242 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.47222 * 179.72373 * 13 12 10 15 15 C 1.38304 * 119.92804 * 269.72621 * 14 13 12 16 16 C 1.38099 * 120.06390 * 179.72264 * 15 14 13 17 17 C 1.38879 * 119.93195 * 0.57818 * 16 15 14 18 18 O 1.35754 * 120.07020 * 179.68160 * 17 16 15 19 19 C 1.34835 * 117.00174 * 174.48633 * 18 17 16 20 20 H 1.07999 * 119.99479 * 5.05241 * 19 18 17 21 21 C 1.38646 * 119.99973 * 185.05815 * 19 18 17 22 22 N 1.31556 * 120.00208 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99892 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47095 * 59.99750 * 23 21 19 25 25 H 1.48497 * 109.47092 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46700 * 299.99402 * 23 21 19 27 27 C 1.38879 * 119.86290 * 359.69585 * 17 16 15 28 28 C 1.38094 * 119.92808 * 0.02562 * 27 17 16 29 29 H 1.08997 * 109.46670 * 179.64668 * 1 2 3 30 30 H 1.08995 * 109.47318 * 299.65246 * 1 2 3 31 31 H 1.08998 * 109.46794 * 59.65178 * 1 2 3 32 32 H 0.96700 * 114.00127 * 175.14476 * 6 4 2 33 33 H 1.09005 * 111.00148 * 277.23001 * 7 4 2 34 34 H 1.08998 * 111.03476 * 153.40143 * 7 4 2 35 35 H 1.09006 * 110.36586 * 204.15110 * 8 7 4 36 36 H 1.09001 * 110.36582 * 81.83029 * 8 7 4 37 37 H 0.97001 * 120.00395 * 359.72546 * 12 10 9 38 38 H 1.08993 * 109.47241 * 299.72662 * 13 12 10 39 39 H 1.08999 * 109.46538 * 59.72430 * 13 12 10 40 40 H 1.07992 * 119.96818 * 359.97438 * 15 14 13 41 41 H 1.08002 * 120.03845 * 180.27160 * 16 15 14 42 42 H 0.96997 * 120.00219 * 180.02562 * 22 21 19 43 43 H 1.07996 * 120.03719 * 180.02562 * 27 17 16 44 44 H 1.08003 * 119.96796 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0522 -0.7514 1.2428 5 1 2.9605 -0.2814 1.6198 6 8 1.0509 -0.8084 2.2608 7 6 2.3562 -2.1696 0.6917 8 6 2.8614 -1.8466 -0.7365 9 7 2.0301 -0.7142 -1.1838 10 6 1.7756 -0.3847 -2.4656 11 8 1.0730 0.5749 -2.7186 12 7 2.2996 -1.1189 -3.4669 13 6 2.0224 -0.7612 -4.8603 14 6 2.7260 -1.7286 -5.7769 15 6 4.0111 -1.4579 -6.2105 16 6 4.6606 -2.3453 -7.0459 17 6 4.0176 -3.5045 -7.4601 18 8 4.6511 -4.3755 -8.2864 19 6 4.0162 -5.5336 -8.5581 20 1 3.0141 -5.6989 -8.1911 21 6 4.6500 -6.5121 -9.3086 22 7 5.8706 -6.3105 -9.7560 23 14 3.7701 -8.1162 -9.6856 24 1 2.5257 -7.8317 -10.4445 25 1 4.6563 -8.9878 -10.4980 26 1 3.4285 -8.8039 -8.4146 27 6 2.7251 -3.7706 -7.0274 28 6 2.0831 -2.8821 -6.1875 29 1 -0.3632 -1.0276 -0.0063 30 1 -0.3634 0.5084 0.8930 31 1 -0.3633 0.5192 -0.8868 32 1 1.3037 -1.3338 3.0323 33 1 1.4522 -2.7778 0.6582 34 1 3.1325 -2.6596 1.2794 35 1 2.7179 -2.7050 -1.3929 36 1 3.9124 -1.5589 -0.7111 37 1 2.8632 -1.8821 -3.2652 38 1 0.9483 -0.8060 -5.0402 39 1 2.3814 0.2496 -5.0541 40 1 4.5086 -0.5538 -5.8924 41 1 5.6658 -2.1356 -7.3808 42 1 6.3138 -6.9949 -10.2814 43 1 2.2226 -4.6714 -7.3474 44 1 1.0780 -3.0887 -5.8503 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364525433.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:22 Heat of formation + Delta-G solvation = -73.985301 kcal Electronic energy + Delta-G solvation = -26180.173216 eV Core-core repulsion = 22291.474769 eV Total energy + Delta-G solvation = -3888.698447 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.61770 -39.22285 -38.48064 -36.87404 -35.81702 -34.42812 -32.40903 -31.44206 -31.14092 -30.28455 -29.36624 -25.90139 -25.84965 -24.76375 -23.16828 -22.06458 -21.31603 -20.58631 -19.70348 -18.34164 -18.07503 -17.84808 -17.04374 -16.11724 -15.83438 -15.32581 -14.82136 -14.65781 -14.55344 -14.53504 -14.24285 -14.01808 -13.72163 -13.58289 -13.40504 -12.99257 -12.79591 -12.77889 -12.56021 -12.17797 -12.09147 -11.92384 -11.68510 -11.48696 -11.39453 -10.96395 -10.89550 -10.80216 -10.70526 -10.51702 -10.40578 -10.07330 -9.44522 -9.08989 -8.92424 -8.62598 -8.29701 -7.34582 -6.54337 -4.13411 1.98514 2.11875 2.59367 3.07925 3.08462 3.11656 3.21416 3.69117 3.88950 3.95260 4.11290 4.25366 4.52677 4.58348 4.80043 4.96581 5.00472 5.14541 5.16407 5.20683 5.25702 5.28715 5.39131 5.44702 5.62698 5.66064 5.66924 5.81549 5.87062 5.94257 6.10615 6.16299 6.29921 6.34294 6.57605 6.62088 6.79352 6.91506 6.99810 7.14345 7.17141 7.26794 7.33786 7.70159 7.90227 7.97752 8.61561 8.90855 9.58936 10.63080 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020806 B = 0.002305 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.427656 B =12143.480398 C =12740.005677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.161 3.839 3 H 0.079 0.921 4 C 0.096 3.904 5 H 0.074 0.926 6 O -0.553 6.553 7 C -0.165 4.165 8 C 0.099 3.901 9 N -0.636 5.636 10 C 0.722 3.278 11 O -0.589 6.589 12 N -0.736 5.736 13 C 0.198 3.802 14 C -0.214 4.214 15 C -0.053 4.053 16 C -0.196 4.196 17 C 0.160 3.840 18 O -0.173 6.173 19 C -0.394 4.394 20 H 0.093 0.907 21 C 0.041 3.959 22 N -0.860 5.860 23 Si 0.942 3.058 24 H -0.269 1.269 25 H -0.277 1.277 26 H -0.269 1.269 27 C -0.237 4.237 28 C -0.050 4.050 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.381 0.619 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.396 0.604 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.112 0.888 41 H 0.118 0.882 42 H 0.272 0.728 43 H 0.128 0.872 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.413 6.881 20.944 22.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.057 3.943 3 H 0.097 0.903 4 C 0.036 3.964 5 H 0.092 0.908 6 O -0.358 6.358 7 C -0.203 4.203 8 C -0.025 4.025 9 N -0.377 5.377 10 C 0.424 3.576 11 O -0.468 6.468 12 N -0.391 5.391 13 C 0.075 3.925 14 C -0.216 4.216 15 C -0.072 4.072 16 C -0.215 4.215 17 C 0.106 3.894 18 O -0.076 6.076 19 C -0.470 4.470 20 H 0.110 0.890 21 C -0.164 4.164 22 N -0.494 5.494 23 Si 0.766 3.234 24 H -0.194 1.194 25 H -0.202 1.202 26 H -0.194 1.194 27 C -0.257 4.257 28 C -0.069 4.069 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.228 0.772 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.231 0.769 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.130 0.870 41 H 0.136 0.864 42 H 0.082 0.918 43 H 0.146 0.854 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.878 7.872 19.927 22.217 hybrid contribution 0.260 -1.729 0.239 1.765 sum -5.618 6.142 20.166 21.816 Atomic orbital electron populations 1.21872 0.93829 1.02339 1.02636 1.21159 0.95921 0.95016 0.82211 0.90332 1.22749 0.90508 0.94882 0.88267 0.90769 1.86532 1.42949 1.75497 1.30806 1.23496 1.02824 0.97890 0.96095 1.22209 0.95079 0.89761 0.95410 1.47598 1.54092 1.32056 1.03925 1.15458 0.80423 0.82653 0.79064 1.90902 1.43178 1.30178 1.82507 1.45538 1.54718 1.33346 1.05494 1.19843 0.98960 0.96670 0.77015 1.19224 0.96724 0.98859 1.06763 1.20538 0.93479 0.97504 0.95695 1.20216 1.01004 0.95459 1.04822 1.19442 0.90939 0.90447 0.88602 1.83980 1.43650 1.26153 1.53772 1.21306 0.99931 0.90949 1.34814 0.88979 1.25313 0.95898 0.99105 0.96119 1.70023 1.11759 1.34718 1.32874 0.85766 0.78831 0.79856 0.78921 1.19414 1.20204 1.19438 1.21154 0.96333 1.02745 1.05419 1.20648 0.98132 0.92741 0.95346 0.92826 0.91315 0.91241 0.77169 0.89524 0.89507 0.90349 0.91087 0.76918 0.91742 0.91674 0.86950 0.86382 0.91816 0.85434 0.87402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.45 37.16 0.31 -1.37 16 2 C 0.16 1.65 3.49 -66.95 -0.23 1.41 16 3 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 4 C 0.10 0.65 4.18 -24.89 -0.10 0.55 16 5 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 6 O -0.55 -3.66 11.79 -35.23 -0.42 -4.07 16 7 C -0.16 -0.97 6.81 -24.58 -0.17 -1.14 16 8 C 0.10 0.77 6.57 -2.53 -0.02 0.76 16 9 N -0.64 -7.13 3.08 -168.69 -0.52 -7.65 16 10 C 0.72 10.41 8.27 -86.93 -0.72 9.69 16 11 O -0.59 -10.56 15.23 5.28 0.08 -10.48 16 12 N -0.74 -9.77 5.51 -66.42 -0.37 -10.14 16 13 C 0.20 2.86 5.80 -5.19 -0.03 2.83 16 14 C -0.21 -3.44 5.25 -104.58 -0.55 -3.99 16 15 C -0.05 -0.89 9.69 -39.61 -0.38 -1.28 16 16 C -0.20 -3.91 9.99 -39.40 -0.39 -4.31 16 17 C 0.16 3.70 6.65 -39.11 -0.26 3.44 16 18 O -0.17 -4.77 9.76 0.02 0.00 -4.77 16 19 C -0.39 -10.64 9.49 30.88 0.29 -10.35 16 20 H 0.09 2.29 5.20 -52.49 -0.27 2.01 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 22 N -0.86 -24.54 13.67 55.48 0.76 -23.78 16 23 Si 0.94 19.89 29.55 -169.99 -5.02 14.86 16 24 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 25 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 26 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 27 C -0.24 -4.88 9.17 -39.40 -0.36 -5.24 16 28 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.72 7.53 -51.93 -0.39 0.33 16 31 H 0.07 0.95 6.73 -51.93 -0.35 0.60 16 32 H 0.38 0.85 9.11 45.56 0.42 1.27 16 33 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 0.60 7.30 -51.93 -0.38 0.22 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.40 4.71 6.95 -40.82 -0.28 4.43 16 38 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 39 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 40 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 41 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 42 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.13 2.64 5.64 -52.49 -0.30 2.34 16 44 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 LS Contribution 364.88 15.07 5.50 5.50 Total: -1.00 -32.86 364.88 -8.42 -41.27 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -5.34 Total: 8.50 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -3.09 Total: -9.25 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: -0.13 Total: -41.57 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.33 Total: -19.32 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.86 -8.42 -41.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364525433.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.711 kcal (2) G-P(sol) polarization free energy of solvation -32.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds