Wall clock time and date at job start Tue Mar 31 2020 12:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.99725 * 2 1 4 4 C 1.54333 * 109.77593 * 121.15585 * 2 1 3 5 5 H 1.08997 * 110.51983 * 215.80871 * 4 2 1 6 6 O 1.42907 * 110.85376 * 339.03449 * 4 2 1 7 7 C 1.55161 * 103.01824 * 97.50076 * 4 2 1 8 8 C 1.54903 * 101.58081 * 35.30477 * 7 4 2 9 9 N 1.47021 * 109.88566 * 238.89810 * 2 1 3 10 10 C 1.34774 * 125.64914 * 59.56033 * 9 2 1 11 11 O 1.21592 * 119.99660 * 359.71434 * 10 9 2 12 12 N 1.34767 * 120.00163 * 179.71843 * 10 9 2 13 13 C 1.46506 * 120.00242 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.47222 * 179.72373 * 13 12 10 15 15 C 1.38304 * 119.92804 * 269.72621 * 14 13 12 16 16 C 1.38099 * 120.06390 * 179.72264 * 15 14 13 17 17 C 1.38879 * 119.93195 * 0.57818 * 16 15 14 18 18 O 1.35754 * 120.07020 * 179.68160 * 17 16 15 19 19 C 1.34835 * 117.00174 * 174.48633 * 18 17 16 20 20 H 1.07999 * 119.99479 * 5.05241 * 19 18 17 21 21 C 1.38646 * 119.99973 * 185.05815 * 19 18 17 22 22 N 1.31556 * 120.00208 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99892 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47095 * 59.99750 * 23 21 19 25 25 H 1.48497 * 109.47092 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46700 * 299.99402 * 23 21 19 27 27 C 1.38879 * 119.86290 * 359.69585 * 17 16 15 28 28 C 1.38094 * 119.92808 * 0.02562 * 27 17 16 29 29 H 1.08997 * 109.46670 * 179.64668 * 1 2 3 30 30 H 1.08995 * 109.47318 * 299.65246 * 1 2 3 31 31 H 1.08998 * 109.46794 * 59.65178 * 1 2 3 32 32 H 0.96700 * 114.00127 * 175.14476 * 6 4 2 33 33 H 1.09005 * 111.00148 * 277.23001 * 7 4 2 34 34 H 1.08998 * 111.03476 * 153.40143 * 7 4 2 35 35 H 1.09006 * 110.36586 * 204.15110 * 8 7 4 36 36 H 1.09001 * 110.36582 * 81.83029 * 8 7 4 37 37 H 0.97001 * 120.00395 * 359.72546 * 12 10 9 38 38 H 1.08993 * 109.47241 * 299.72662 * 13 12 10 39 39 H 1.08999 * 109.46538 * 59.72430 * 13 12 10 40 40 H 1.07992 * 119.96818 * 359.97438 * 15 14 13 41 41 H 1.08002 * 120.03845 * 180.27160 * 16 15 14 42 42 H 0.96997 * 120.00219 * 180.02562 * 22 21 19 43 43 H 1.07996 * 120.03719 * 180.02562 * 27 17 16 44 44 H 1.08003 * 119.96796 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0522 -0.7514 1.2428 5 1 2.9605 -0.2814 1.6198 6 8 1.0509 -0.8084 2.2608 7 6 2.3562 -2.1696 0.6917 8 6 2.8614 -1.8466 -0.7365 9 7 2.0301 -0.7142 -1.1838 10 6 1.7756 -0.3847 -2.4656 11 8 1.0730 0.5749 -2.7186 12 7 2.2996 -1.1189 -3.4669 13 6 2.0224 -0.7612 -4.8603 14 6 2.7260 -1.7286 -5.7769 15 6 4.0111 -1.4579 -6.2105 16 6 4.6606 -2.3453 -7.0459 17 6 4.0176 -3.5045 -7.4601 18 8 4.6511 -4.3755 -8.2864 19 6 4.0162 -5.5336 -8.5581 20 1 3.0141 -5.6989 -8.1911 21 6 4.6500 -6.5121 -9.3086 22 7 5.8706 -6.3105 -9.7560 23 14 3.7701 -8.1162 -9.6856 24 1 2.5257 -7.8317 -10.4445 25 1 4.6563 -8.9878 -10.4980 26 1 3.4285 -8.8039 -8.4146 27 6 2.7251 -3.7706 -7.0274 28 6 2.0831 -2.8821 -6.1875 29 1 -0.3632 -1.0276 -0.0063 30 1 -0.3634 0.5084 0.8930 31 1 -0.3633 0.5192 -0.8868 32 1 1.3037 -1.3338 3.0323 33 1 1.4522 -2.7778 0.6582 34 1 3.1325 -2.6596 1.2794 35 1 2.7179 -2.7050 -1.3929 36 1 3.9124 -1.5589 -0.7111 37 1 2.8632 -1.8821 -3.2652 38 1 0.9483 -0.8060 -5.0402 39 1 2.3814 0.2496 -5.0541 40 1 4.5086 -0.5538 -5.8924 41 1 5.6658 -2.1356 -7.3808 42 1 6.3138 -6.9949 -10.2814 43 1 2.2226 -4.6714 -7.3474 44 1 1.0780 -3.0887 -5.8503 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364525433.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:21 Heat of formation + Delta-G solvation = -98.061328 kcal Electronic energy + Delta-G solvation = -26181.217231 eV Core-core repulsion = 22291.474769 eV Total energy + Delta-G solvation = -3889.742462 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.55022 -40.81070 -39.42699 -38.43908 -36.49471 -35.70230 -34.28657 -32.37440 -31.99203 -31.82372 -30.62906 -27.64825 -26.56992 -26.22348 -23.99568 -23.64942 -22.31365 -21.81135 -20.69947 -19.87263 -19.26939 -18.79464 -18.36313 -17.19800 -16.83808 -16.50317 -16.37875 -16.09525 -15.61318 -15.56988 -15.36067 -15.22264 -15.03622 -14.67736 -14.66323 -14.36581 -14.13550 -13.72073 -13.69383 -13.44968 -13.17628 -13.01757 -12.83593 -12.69123 -12.53058 -12.38764 -12.23928 -12.16266 -12.13416 -11.55927 -11.24136 -11.20638 -10.87959 -10.79745 -10.22350 -9.82039 -9.54278 -9.02723 -8.48157 -6.16533 0.51040 0.57256 1.36039 1.44737 1.51775 1.60360 2.11723 2.17332 2.75394 3.03363 3.18075 3.26382 3.47952 3.53936 3.66652 3.87109 4.02377 4.04628 4.16944 4.21913 4.34781 4.45502 4.45560 4.56202 4.59165 4.68988 4.69353 4.77695 4.80228 4.98414 5.02085 5.03639 5.14037 5.14757 5.25968 5.29743 5.39796 5.47961 5.52607 5.68481 5.75080 6.01180 6.02521 6.15174 6.91624 6.96469 6.97428 7.53290 7.75384 8.74332 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020806 B = 0.002305 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.427656 B =12143.480398 C =12740.005677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.149 3.851 3 H 0.069 0.931 4 C 0.107 3.893 5 H 0.096 0.904 6 O -0.569 6.569 7 C -0.153 4.153 8 C 0.090 3.910 9 N -0.634 5.634 10 C 0.717 3.283 11 O -0.630 6.630 12 N -0.729 5.729 13 C 0.204 3.796 14 C -0.182 4.182 15 C -0.042 4.042 16 C -0.203 4.203 17 C 0.124 3.876 18 O -0.228 6.228 19 C -0.414 4.414 20 H 0.103 0.897 21 C -0.021 4.021 22 N -0.918 5.918 23 Si 1.017 2.983 24 H -0.259 1.259 25 H -0.273 1.273 26 H -0.256 1.256 27 C -0.243 4.243 28 C -0.045 4.045 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.038 0.962 32 H 0.401 0.599 33 H 0.078 0.922 34 H 0.118 0.882 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.405 0.595 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.147 0.853 41 H 0.116 0.884 42 H 0.273 0.727 43 H 0.121 0.879 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.371 6.962 23.812 25.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.045 3.955 3 H 0.087 0.913 4 C 0.047 3.953 5 H 0.114 0.886 6 O -0.377 6.377 7 C -0.191 4.191 8 C -0.032 4.032 9 N -0.373 5.373 10 C 0.419 3.581 11 O -0.511 6.511 12 N -0.385 5.385 13 C 0.081 3.919 14 C -0.183 4.183 15 C -0.060 4.060 16 C -0.223 4.223 17 C 0.072 3.928 18 O -0.134 6.134 19 C -0.490 4.490 20 H 0.121 0.879 21 C -0.219 4.219 22 N -0.556 5.556 23 Si 0.836 3.164 24 H -0.183 1.183 25 H -0.197 1.197 26 H -0.180 1.180 27 C -0.262 4.262 28 C -0.063 4.063 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.057 0.943 32 H 0.252 0.748 33 H 0.097 0.903 34 H 0.136 0.864 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.241 0.759 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.164 0.836 41 H 0.134 0.866 42 H 0.082 0.918 43 H 0.139 0.861 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.844 7.958 22.881 25.174 hybrid contribution 0.432 -1.432 -0.375 1.542 sum -6.412 6.526 22.506 24.295 Atomic orbital electron populations 1.21739 0.94985 1.01557 1.01407 1.21341 0.95077 0.95409 0.83677 0.91264 1.22642 0.90764 0.94910 0.86965 0.88639 1.86480 1.43354 1.76225 1.31670 1.23475 1.03369 0.97333 0.94952 1.22512 0.95459 0.88592 0.96637 1.47619 1.53823 1.32798 1.03069 1.15588 0.80165 0.82256 0.80099 1.90878 1.44930 1.31932 1.83394 1.45272 1.54817 1.33555 1.04823 1.19724 0.98785 0.96162 0.77242 1.19465 0.96006 0.97946 1.04899 1.20866 0.93548 0.97683 0.93932 1.20443 1.01311 0.95190 1.05326 1.19989 0.92274 0.91019 0.89474 1.83951 1.45366 1.27321 1.56746 1.21790 1.00592 0.91460 1.35192 0.87925 1.26570 0.96693 1.02871 0.95745 1.70169 1.13954 1.36342 1.35147 0.84667 0.77690 0.74821 0.79197 1.18291 1.19748 1.18019 1.21231 0.95636 1.03331 1.06008 1.20920 0.99216 0.92153 0.94033 0.93234 0.90692 0.94268 0.74764 0.90348 0.86402 0.90138 0.89443 0.75877 0.91586 0.91156 0.83559 0.86571 0.91781 0.86125 0.84522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.45 71.98 0.61 -2.44 16 2 C 0.15 2.80 3.49 45.35 0.16 2.96 16 3 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 4 C 0.11 1.11 4.18 31.79 0.13 1.24 16 5 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 6 O -0.57 -5.84 11.79 -148.98 -1.76 -7.60 16 7 C -0.15 -1.23 6.81 31.99 0.22 -1.01 16 8 C 0.09 1.12 6.57 86.85 0.57 1.69 16 9 N -0.63 -12.89 3.08 -805.88 -2.48 -15.37 16 10 C 0.72 19.42 8.27 179.06 1.48 20.90 16 11 O -0.63 -22.09 15.23 -4.01 -0.06 -22.15 16 12 N -0.73 -17.36 5.51 -482.30 -2.66 -20.02 16 13 C 0.20 5.27 5.80 85.63 0.50 5.76 16 14 C -0.18 -5.31 5.25 -19.83 -0.10 -5.41 16 15 C -0.04 -1.30 9.69 22.25 0.22 -1.08 16 16 C -0.20 -8.10 9.99 22.39 0.22 -7.88 16 17 C 0.12 5.84 6.65 22.58 0.15 5.99 16 18 O -0.23 -13.23 9.76 -22.84 -0.22 -13.45 16 19 C -0.41 -23.35 9.49 67.92 0.64 -22.70 16 20 H 0.10 5.27 5.20 -2.91 -0.02 5.25 16 21 C -0.02 -1.15 5.49 84.83 0.47 -0.69 16 22 N -0.92 -55.10 13.67 21.61 0.30 -54.80 16 23 Si 1.02 41.58 29.55 68.60 2.03 43.60 16 24 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 25 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 26 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 27 C -0.24 -9.94 9.17 22.39 0.21 -9.73 16 28 C -0.04 -1.44 9.69 22.25 0.22 -1.22 16 29 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.07 1.51 7.53 -2.39 -0.02 1.49 16 31 H 0.04 1.09 6.73 -2.39 -0.02 1.07 16 32 H 0.40 0.39 9.11 -74.06 -0.67 -0.29 16 33 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 34 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.08 0.98 7.30 -2.38 -0.02 0.96 16 36 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.41 8.32 6.95 -92.71 -0.64 7.68 16 38 H 0.07 1.76 8.08 -2.39 -0.02 1.74 16 39 H 0.07 1.82 8.08 -2.39 -0.02 1.80 16 40 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 41 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 42 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 43 H 0.12 5.05 5.64 -2.91 -0.02 5.03 16 44 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -76.58 364.88 0.55 -76.03 By element: Atomic # 1 Polarization: 27.66 SS G_CDS: -0.28 Total: 27.38 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: 5.68 Total: -13.63 kcal Atomic # 7 Polarization: -85.35 SS G_CDS: -4.84 Total: -90.20 kcal Atomic # 8 Polarization: -41.16 SS G_CDS: -2.04 Total: -43.20 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.60 kcal Total: -76.58 0.55 -76.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364525433.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.028 kcal (2) G-P(sol) polarization free energy of solvation -76.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds