Wall clock time and date at job start Tue Mar 31 2020 12:57:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09000 * 109.99601 * 2 1
4 4 C 1.54319 * 109.88314 * 238.90750 * 2 1 3
5 5 H 1.08998 * 110.87530 * 144.34391 * 4 2 1
6 6 C 1.52996 * 110.72432 * 21.13345 * 4 2 1
7 7 O 1.42895 * 109.47793 * 180.02562 * 6 4 2
8 8 C 1.55159 * 102.94216 * 262.77014 * 4 2 1
9 9 C 1.54916 * 101.58185 * 324.50252 * 8 4 2
10 10 N 1.47023 * 109.88282 * 121.09401 * 2 1 3
11 11 C 1.34773 * 125.65163 * 300.51121 * 10 2 1
12 12 O 1.21590 * 119.99903 * 359.97438 * 11 10 2
13 13 N 1.34770 * 120.00274 * 179.97438 * 11 10 2
14 14 C 1.39952 * 120.00076 * 174.74539 * 13 11 10
15 15 C 1.38960 * 120.03376 * 326.16413 * 14 13 11
16 16 C 1.38158 * 120.06195 * 179.71578 * 15 14 13
17 17 C 1.38172 * 120.13765 * 0.55953 * 16 15 14
18 18 C 1.38904 * 120.07050 * 359.71544 * 17 16 15
19 19 O 1.35758 * 120.03336 * 179.97438 * 18 17 16
20 20 C 1.34828 * 116.99801 * 185.93267 * 19 18 17
21 21 H 1.07998 * 120.00119 * 5.41064 * 20 19 18
22 22 C 1.38651 * 119.99582 * 185.39974 * 20 19 18
23 23 N 1.31550 * 120.00670 * 0.02562 * 22 20 19
24 24 Si 1.86806 * 119.99684 * 179.97438 * 22 20 19
25 25 H 1.48502 * 109.46730 * 90.00362 * 24 22 20
26 26 H 1.48497 * 109.47164 * 210.00135 * 24 22 20
27 27 H 1.48499 * 109.47452 * 330.00676 * 24 22 20
28 28 C 1.38704 * 120.03393 * 146.43433 * 14 13 11
29 29 H 1.09006 * 109.46625 * 181.09758 * 1 2 3
30 30 H 1.09001 * 109.46878 * 301.09162 * 1 2 3
31 31 H 1.08995 * 109.47693 * 61.09861 * 1 2 3
32 32 H 1.08997 * 109.46969 * 60.02183 * 6 4 2
33 33 H 1.09008 * 109.46786 * 300.03031 * 6 4 2
34 34 H 0.96696 * 114.00477 * 179.97438 * 7 6 4
35 35 H 1.09010 * 111.00263 * 82.56830 * 8 4 2
36 36 H 1.08993 * 111.00651 * 206.42400 * 8 4 2
37 37 H 1.08998 * 110.36596 * 155.84905 * 9 8 4
38 38 H 1.09004 * 110.36141 * 278.16915 * 9 8 4
39 39 H 0.97001 * 120.00109 * 354.75263 * 13 11 10
40 40 H 1.07997 * 119.96805 * 359.97438 * 15 14 13
41 41 H 1.08001 * 119.92943 * 180.24903 * 16 15 14
42 42 H 1.08002 * 119.96091 * 179.70433 * 17 16 15
43 43 H 0.97002 * 120.00759 * 179.97438 * 23 22 20
44 44 H 1.08003 * 120.06443 * 0.02562 * 28 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9027 1.0243 0.0000
4 6 2.0549 -0.7494 -1.2427
5 1 2.9651 -0.2843 -1.6211
6 6 0.9838 -0.8050 -2.3339
7 8 1.4968 -1.5038 -3.4698
8 6 2.3520 -2.1694 -0.6924
9 6 2.8569 -1.8497 0.7368
10 7 2.0300 -0.7140 1.1839
11 6 1.7743 -0.3853 2.4657
12 8 1.0753 0.5769 2.7187
13 7 2.2934 -1.1229 3.4671
14 6 2.1200 -0.7195 4.7959
15 6 2.0857 0.6329 5.1134
16 6 1.9087 1.0318 6.4242
17 6 1.7769 0.0881 7.4248
18 6 1.8161 -1.2653 7.1146
19 8 1.6871 -2.1919 8.0983
20 6 1.8566 -3.4831 7.7491
21 1 2.1697 -3.7347 6.7466
22 6 1.6292 -4.4878 8.6771
23 7 1.2476 -4.1814 9.8982
24 14 1.8634 -6.2768 8.1930
25 1 3.2653 -6.6838 8.4657
26 1 0.9382 -7.1285 8.9828
27 1 1.5731 -6.4401 6.7459
28 6 1.9879 -1.6693 5.7981
29 1 -0.3633 -1.0276 0.0197
30 1 -0.3633 0.5307 0.8801
31 1 -0.3634 0.4966 -0.8996
32 1 0.7086 0.2088 -2.6247
33 1 0.1046 -1.3252 -1.9537
34 1 0.8698 -1.5777 -4.2023
35 1 1.4453 -2.7736 -0.6603
36 1 3.1271 -2.6617 -1.2796
37 1 2.7090 -2.7080 1.3922
38 1 3.9092 -1.5665 0.7129
39 1 2.7872 -1.9335 3.2668
40 1 2.1933 1.3728 4.3341
41 1 1.8783 2.0835 6.6680
42 1 1.6435 0.4031 8.4492
43 1 1.0881 -4.8843 10.5474
44 1 2.0191 -2.7210 5.5545
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001365034560.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:57:56
Heat of formation + Delta-G solvation = -67.227714 kcal
Electronic energy + Delta-G solvation = -26758.245296 eV
Core-core repulsion = 22869.839880 eV
Total energy + Delta-G solvation = -3888.405417 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.157 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-40.83219 -39.30534 -38.33785 -36.81369 -36.17073 -34.30821 -32.56782 -32.15668
-31.37300 -29.27204 -28.46983 -27.02373 -25.34590 -25.00339 -23.39651 -21.82126
-21.77208 -20.05899 -19.38912 -18.45022 -17.93689 -17.83991 -17.22632 -16.28333
-15.80336 -15.47096 -15.14641 -14.99438 -14.54879 -14.32487 -14.07878 -13.97645
-13.57910 -13.51254 -13.47824 -12.97057 -12.92978 -12.74558 -12.56008 -12.26602
-11.92759 -11.72617 -11.48972 -11.35802 -11.12300 -11.04318 -10.95625 -10.90629
-10.78470 -10.45180 -10.29870 -9.96651 -9.61823 -9.42967 -8.81857 -8.77735
-7.67236 -7.10624 -6.43346 -4.02949 2.08357 2.41166 2.52609 3.11803
3.12475 3.17364 3.30932 3.65556 3.91550 3.97089 4.18026 4.26670
4.63851 4.64736 4.79433 4.87771 4.96129 5.04041 5.11784 5.13292
5.26698 5.29009 5.30911 5.36864 5.49847 5.63937 5.69324 5.78580
5.87540 5.99300 6.04337 6.11265 6.22423 6.30206 6.35701 6.62550
6.87858 7.03835 7.13731 7.18539 7.27969 7.37391 7.45669 7.85723
7.98889 8.01385 8.65033 9.02100 9.73295 10.74859
Molecular weight = 320.16amu
Principal moments of inertia in cm(-1)
A = 0.015538 B = 0.002965 C = 0.002578
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1801.593163 B = 9440.765131 C =10857.874897
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C 0.164 3.836
3 H 0.078 0.922
4 C -0.098 4.098
5 H 0.092 0.908
6 C 0.085 3.915
7 O -0.574 6.574
8 C -0.118 4.118
9 C 0.093 3.907
10 N -0.634 5.634
11 C 0.723 3.277
12 O -0.566 6.566
13 N -0.680 5.680
14 C 0.200 3.800
15 C -0.205 4.205
16 C -0.062 4.062
17 C -0.202 4.202
18 C 0.169 3.831
19 O -0.177 6.177
20 C -0.391 4.391
21 H 0.089 0.911
22 C 0.039 3.961
23 N -0.863 5.863
24 Si 0.940 3.060
25 H -0.273 1.273
26 H -0.278 1.278
27 H -0.269 1.269
28 C -0.258 4.258
29 H 0.057 0.943
30 H 0.077 0.923
31 H 0.064 0.936
32 H 0.050 0.950
33 H 0.055 0.945
34 H 0.381 0.619
35 H 0.077 0.923
36 H 0.087 0.913
37 H 0.075 0.925
38 H 0.071 0.929
39 H 0.401 0.599
40 H 0.119 0.881
41 H 0.115 0.885
42 H 0.118 0.882
43 H 0.270 0.730
44 H 0.129 0.871
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.916 4.205 -24.193 24.630
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.229 4.229
2 C 0.060 3.940
3 H 0.096 0.904
4 C -0.117 4.117
5 H 0.110 0.890
6 C 0.007 3.993
7 O -0.380 6.380
8 C -0.156 4.156
9 C -0.030 4.030
10 N -0.373 5.373
11 C 0.426 3.574
12 O -0.441 6.441
13 N -0.327 5.327
14 C 0.106 3.894
15 C -0.226 4.226
16 C -0.081 4.081
17 C -0.222 4.222
18 C 0.115 3.885
19 O -0.080 6.080
20 C -0.468 4.468
21 H 0.107 0.893
22 C -0.165 4.165
23 N -0.498 5.498
24 Si 0.765 3.235
25 H -0.199 1.199
26 H -0.203 1.203
27 H -0.193 1.193
28 C -0.280 4.280
29 H 0.076 0.924
30 H 0.096 0.904
31 H 0.083 0.917
32 H 0.068 0.932
33 H 0.073 0.927
34 H 0.228 0.772
35 H 0.095 0.905
36 H 0.106 0.894
37 H 0.093 0.907
38 H 0.089 0.911
39 H 0.236 0.764
40 H 0.137 0.863
41 H 0.133 0.867
42 H 0.136 0.864
43 H 0.080 0.920
44 H 0.146 0.854
Dipole moment (debyes) X Y Z Total
from point charges 1.811 4.795 -23.109 23.670
hybrid contribution -0.152 -1.423 -0.761 1.621
sum 1.659 3.372 -23.870 24.164
Atomic orbital electron populations
1.22291 0.94790 1.02485 1.03292 1.21209 0.94651 0.95605 0.82584
0.90401 1.22200 0.99275 0.96937 0.93266 0.88957 1.22263 0.95419
0.95636 0.85945 1.86443 1.44989 1.79131 1.27421 1.22739 1.02391
0.96203 0.94251 1.22375 0.95240 0.89236 0.96130 1.47645 1.53990
1.32044 1.03662 1.15345 0.80195 0.82810 0.79063 1.90935 1.41757
1.29444 1.82013 1.42622 1.57693 1.28170 1.04234 1.17184 0.98326
0.93102 0.80794 1.20558 1.11647 0.93811 0.96552 1.20521 0.97619
0.98075 0.91897 1.20235 1.12117 0.90251 0.99635 1.19058 0.92058
0.89986 0.87374 1.84023 1.77401 1.15501 1.31099 1.21253 1.47268
0.78997 0.99233 0.89325 1.25265 0.96479 0.99804 0.94950 1.70031
1.42685 1.33746 1.03322 0.85739 0.78482 0.80667 0.78656 1.19902
1.20271 1.19343 1.20767 1.15625 0.99181 0.92393 0.92399 0.90358
0.91725 0.93171 0.92696 0.77238 0.90470 0.89412 0.90694 0.91109
0.76376 0.86281 0.86656 0.86412 0.92046 0.85377
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.71 7.92 37.16 0.29 -1.41 16
2 C 0.16 1.63 3.44 -66.95 -0.23 1.40 16
3 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16
4 C -0.10 -0.74 3.16 -88.79 -0.28 -1.02 16
5 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16
6 C 0.09 0.54 5.17 37.16 0.19 0.73 16
7 O -0.57 -3.81 13.51 -35.23 -0.48 -4.28 16
8 C -0.12 -0.88 6.39 -24.58 -0.16 -1.04 16
9 C 0.09 0.82 6.62 -2.53 -0.02 0.80 16
10 N -0.63 -7.58 3.08 -168.69 -0.52 -8.10 16
11 C 0.72 11.65 8.00 -86.93 -0.70 10.96 16
12 O -0.57 -10.98 12.96 5.29 0.07 -10.91 16
13 N -0.68 -11.02 5.30 -14.24 -0.08 -11.09 16
14 C 0.20 3.96 6.27 -83.71 -0.52 3.44 16
15 C -0.20 -4.07 8.65 -39.34 -0.34 -4.41 16
16 C -0.06 -1.21 10.03 -39.64 -0.40 -1.60 16
17 C -0.20 -4.43 9.99 -39.36 -0.39 -4.82 16
18 C 0.17 4.17 6.64 -39.14 -0.26 3.91 16
19 O -0.18 -5.07 9.76 0.03 0.00 -5.07 16
20 C -0.39 -10.90 9.44 30.88 0.29 -10.61 16
21 H 0.09 2.27 5.30 -52.49 -0.28 1.99 16
22 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16
23 N -0.86 -25.35 13.67 55.48 0.76 -24.59 16
24 Si 0.94 20.39 29.55 -169.99 -5.02 15.37 16
25 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16
26 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16
27 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16
28 C -0.26 -5.70 9.04 -39.21 -0.35 -6.05 16
29 H 0.06 0.58 7.58 -51.93 -0.39 0.18 16
30 H 0.08 1.04 6.76 -51.93 -0.35 0.69 16
31 H 0.06 0.48 6.65 -51.93 -0.35 0.13 16
32 H 0.05 0.27 7.58 -51.93 -0.39 -0.13 16
33 H 0.05 0.34 6.62 -51.92 -0.34 -0.01 16
34 H 0.38 0.90 9.12 45.56 0.42 1.32 16
35 H 0.08 0.60 8.02 -51.92 -0.42 0.18 16
36 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16
37 H 0.07 0.62 7.22 -51.93 -0.37 0.24 16
38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16
39 H 0.40 5.32 7.27 -40.82 -0.30 5.03 16
40 H 0.12 2.34 6.45 -52.49 -0.34 2.00 16
41 H 0.12 1.86 8.06 -52.49 -0.42 1.44 16
42 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16
43 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16
44 H 0.13 2.78 5.72 -52.48 -0.30 2.48 16
LS Contribution 356.68 15.07 5.38 5.38
Total: -1.00 -34.71 356.68 -7.95 -42.66
By element:
Atomic # 1 Polarization: 14.49 SS G_CDS: -5.09 Total: 9.40 kcal
Atomic # 6 Polarization: -5.78 SS G_CDS: -2.97 Total: -8.75 kcal
Atomic # 7 Polarization: -43.96 SS G_CDS: 0.16 Total: -43.79 kcal
Atomic # 8 Polarization: -19.86 SS G_CDS: -0.41 Total: -20.26 kcal
Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal
Total LS contribution 5.38 Total: 5.38 kcal
Total: -34.71 -7.95 -42.66 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001365034560.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -24.566 kcal
(2) G-P(sol) polarization free energy of solvation -34.713 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.280 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.662 kcal
(6) G-S(sol) free energy of system = (1) + (5) -67.228 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds