Wall clock time and date at job start Tue Mar 31 2020 12:57:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09000 * 109.99601 * 2 1
4 4 C 1.54319 * 109.88314 * 238.90750 * 2 1 3
5 5 H 1.08998 * 110.87530 * 144.34391 * 4 2 1
6 6 C 1.52996 * 110.72432 * 21.13345 * 4 2 1
7 7 O 1.42895 * 109.47793 * 180.02562 * 6 4 2
8 8 C 1.55159 * 102.94216 * 262.77014 * 4 2 1
9 9 C 1.54916 * 101.58185 * 324.50252 * 8 4 2
10 10 N 1.47023 * 109.88282 * 121.09401 * 2 1 3
11 11 C 1.34773 * 125.65163 * 300.51121 * 10 2 1
12 12 O 1.21590 * 119.99903 * 359.97438 * 11 10 2
13 13 N 1.34770 * 120.00274 * 179.97438 * 11 10 2
14 14 C 1.39952 * 120.00076 * 174.74539 * 13 11 10
15 15 C 1.38960 * 120.03376 * 326.16413 * 14 13 11
16 16 C 1.38158 * 120.06195 * 179.71578 * 15 14 13
17 17 C 1.38172 * 120.13765 * 0.55953 * 16 15 14
18 18 C 1.38904 * 120.07050 * 359.71544 * 17 16 15
19 19 O 1.35758 * 120.03336 * 179.97438 * 18 17 16
20 20 C 1.34828 * 116.99801 * 185.93267 * 19 18 17
21 21 H 1.07998 * 120.00119 * 5.41064 * 20 19 18
22 22 C 1.38651 * 119.99582 * 185.39974 * 20 19 18
23 23 N 1.31550 * 120.00670 * 0.02562 * 22 20 19
24 24 Si 1.86806 * 119.99684 * 179.97438 * 22 20 19
25 25 H 1.48502 * 109.46730 * 90.00362 * 24 22 20
26 26 H 1.48497 * 109.47164 * 210.00135 * 24 22 20
27 27 H 1.48499 * 109.47452 * 330.00676 * 24 22 20
28 28 C 1.38704 * 120.03393 * 146.43433 * 14 13 11
29 29 H 1.09006 * 109.46625 * 181.09758 * 1 2 3
30 30 H 1.09001 * 109.46878 * 301.09162 * 1 2 3
31 31 H 1.08995 * 109.47693 * 61.09861 * 1 2 3
32 32 H 1.08997 * 109.46969 * 60.02183 * 6 4 2
33 33 H 1.09008 * 109.46786 * 300.03031 * 6 4 2
34 34 H 0.96696 * 114.00477 * 179.97438 * 7 6 4
35 35 H 1.09010 * 111.00263 * 82.56830 * 8 4 2
36 36 H 1.08993 * 111.00651 * 206.42400 * 8 4 2
37 37 H 1.08998 * 110.36596 * 155.84905 * 9 8 4
38 38 H 1.09004 * 110.36141 * 278.16915 * 9 8 4
39 39 H 0.97001 * 120.00109 * 354.75263 * 13 11 10
40 40 H 1.07997 * 119.96805 * 359.97438 * 15 14 13
41 41 H 1.08001 * 119.92943 * 180.24903 * 16 15 14
42 42 H 1.08002 * 119.96091 * 179.70433 * 17 16 15
43 43 H 0.97002 * 120.00759 * 179.97438 * 23 22 20
44 44 H 1.08003 * 120.06443 * 0.02562 * 28 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9027 1.0243 0.0000
4 6 2.0549 -0.7494 -1.2427
5 1 2.9651 -0.2843 -1.6211
6 6 0.9838 -0.8050 -2.3339
7 8 1.4968 -1.5038 -3.4698
8 6 2.3520 -2.1694 -0.6924
9 6 2.8569 -1.8497 0.7368
10 7 2.0300 -0.7140 1.1839
11 6 1.7743 -0.3853 2.4657
12 8 1.0753 0.5769 2.7187
13 7 2.2934 -1.1229 3.4671
14 6 2.1200 -0.7195 4.7959
15 6 2.0857 0.6329 5.1134
16 6 1.9087 1.0318 6.4242
17 6 1.7769 0.0881 7.4248
18 6 1.8161 -1.2653 7.1146
19 8 1.6871 -2.1919 8.0983
20 6 1.8566 -3.4831 7.7491
21 1 2.1697 -3.7347 6.7466
22 6 1.6292 -4.4878 8.6771
23 7 1.2476 -4.1814 9.8982
24 14 1.8634 -6.2768 8.1930
25 1 3.2653 -6.6838 8.4657
26 1 0.9382 -7.1285 8.9828
27 1 1.5731 -6.4401 6.7459
28 6 1.9879 -1.6693 5.7981
29 1 -0.3633 -1.0276 0.0197
30 1 -0.3633 0.5307 0.8801
31 1 -0.3634 0.4966 -0.8996
32 1 0.7086 0.2088 -2.6247
33 1 0.1046 -1.3252 -1.9537
34 1 0.8698 -1.5777 -4.2023
35 1 1.4453 -2.7736 -0.6603
36 1 3.1271 -2.6617 -1.2796
37 1 2.7090 -2.7080 1.3922
38 1 3.9092 -1.5665 0.7129
39 1 2.7872 -1.9335 3.2668
40 1 2.1933 1.3728 4.3341
41 1 1.8783 2.0835 6.6680
42 1 1.6435 0.4031 8.4492
43 1 1.0881 -4.8843 10.5474
44 1 2.0191 -2.7210 5.5545
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001365034560.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:57:55
Heat of formation + Delta-G solvation = -92.555870 kcal
Electronic energy + Delta-G solvation = -26759.343607 eV
Core-core repulsion = 22869.839880 eV
Total energy + Delta-G solvation = -3889.503728 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.157 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-41.97578 -40.76058 -39.63841 -38.08461 -37.16880 -35.74819 -34.25488 -33.40369
-32.14323 -30.91778 -30.09169 -27.82165 -27.27945 -25.81007 -24.34227 -23.49416
-23.12601 -21.26712 -20.39978 -19.76103 -19.42835 -18.92248 -18.35637 -17.30251
-17.15493 -16.73438 -16.48948 -16.30744 -15.97084 -15.71185 -15.53565 -15.30572
-14.82398 -14.63293 -14.43045 -14.32989 -14.08047 -13.69096 -13.57098 -13.51156
-13.26359 -13.16066 -12.77969 -12.60736 -12.56360 -12.47169 -12.12035 -11.93685
-11.79700 -11.52551 -11.47855 -11.35035 -11.05634 -10.76237 -10.72542 -9.82946
-9.31964 -8.83977 -8.45814 -6.14537 0.44263 0.70559 1.35866 1.37623
1.45728 1.53510 2.00033 2.18356 2.79794 2.85088 3.13001 3.17812
3.49589 3.52752 3.64550 4.02858 4.11392 4.14201 4.28594 4.30157
4.33159 4.42121 4.44921 4.55218 4.56017 4.62046 4.63686 4.71440
4.75447 4.84882 5.00235 5.03609 5.06310 5.11317 5.17159 5.23477
5.36430 5.46989 5.50398 5.67612 5.67823 5.94986 6.02259 6.19607
6.77781 6.94314 6.98471 7.38775 7.78115 8.77292
Molecular weight = 320.16amu
Principal moments of inertia in cm(-1)
A = 0.015538 B = 0.002965 C = 0.002578
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1801.593163 B = 9440.765131 C =10857.874897
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.157 3.843
3 H 0.073 0.927
4 C -0.090 4.090
5 H 0.097 0.903
6 C 0.087 3.913
7 O -0.590 6.590
8 C -0.111 4.111
9 C 0.086 3.914
10 N -0.628 5.628
11 C 0.719 3.281
12 O -0.603 6.603
13 N -0.674 5.674
14 C 0.207 3.793
15 C -0.199 4.199
16 C -0.050 4.050
17 C -0.215 4.215
18 C 0.136 3.864
19 O -0.225 6.225
20 C -0.413 4.413
21 H 0.102 0.898
22 C -0.022 4.022
23 N -0.920 5.920
24 Si 1.018 2.982
25 H -0.262 1.262
26 H -0.273 1.273
27 H -0.252 1.252
28 C -0.261 4.261
29 H 0.057 0.943
30 H 0.041 0.959
31 H 0.092 0.908
32 H 0.062 0.938
33 H 0.057 0.943
34 H 0.399 0.601
35 H 0.075 0.925
36 H 0.102 0.898
37 H 0.081 0.919
38 H 0.086 0.914
39 H 0.415 0.585
40 H 0.128 0.872
41 H 0.154 0.846
42 H 0.120 0.880
43 H 0.273 0.727
44 H 0.128 0.872
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.671 3.810 -27.665 28.053
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C 0.054 3.946
3 H 0.091 0.909
4 C -0.109 4.109
5 H 0.116 0.884
6 C 0.009 3.991
7 O -0.398 6.398
8 C -0.149 4.149
9 C -0.036 4.036
10 N -0.366 5.366
11 C 0.421 3.579
12 O -0.482 6.482
13 N -0.322 5.322
14 C 0.111 3.889
15 C -0.220 4.220
16 C -0.068 4.068
17 C -0.235 4.235
18 C 0.085 3.915
19 O -0.132 6.132
20 C -0.489 4.489
21 H 0.120 0.880
22 C -0.220 4.220
23 N -0.558 5.558
24 Si 0.838 3.162
25 H -0.187 1.187
26 H -0.198 1.198
27 H -0.175 1.175
28 C -0.283 4.283
29 H 0.076 0.924
30 H 0.061 0.939
31 H 0.110 0.890
32 H 0.080 0.920
33 H 0.075 0.925
34 H 0.249 0.751
35 H 0.094 0.906
36 H 0.120 0.880
37 H 0.099 0.901
38 H 0.104 0.896
39 H 0.253 0.747
40 H 0.146 0.854
41 H 0.172 0.828
42 H 0.139 0.861
43 H 0.082 0.918
44 H 0.145 0.855
Dipole moment (debyes) X Y Z Total
from point charges 2.589 4.408 -26.689 27.174
hybrid contribution -0.369 -1.059 0.084 1.124
sum 2.221 3.349 -26.605 26.907
Atomic orbital electron populations
1.22230 0.94838 1.02225 1.02923 1.21404 0.94660 0.95696 0.82851
0.90926 1.22144 0.99841 0.96465 0.92438 0.88428 1.22211 0.94749
0.96422 0.85677 1.86386 1.46189 1.79157 1.28090 1.22722 1.02718
0.96155 0.93275 1.22660 0.95551 0.88297 0.97101 1.47699 1.53484
1.32752 1.02642 1.15475 0.79923 0.82365 0.80118 1.90905 1.43374
1.31024 1.82908 1.42492 1.57837 1.28892 1.03001 1.17192 0.96854
0.92797 0.82014 1.20840 1.10212 0.94012 0.96958 1.20904 0.95420
0.99513 0.90971 1.20469 1.12551 0.89791 1.00657 1.19570 0.93370
0.90536 0.88016 1.83990 1.79749 1.16305 1.33124 1.21793 1.47668
0.79317 1.00092 0.88039 1.26592 0.95789 1.04957 0.94668 1.70182
1.45154 1.35552 1.04918 0.84593 0.78857 0.73697 0.79099 1.18663
1.19831 1.17523 1.20767 1.15781 0.99636 0.92103 0.92412 0.93934
0.88966 0.91991 0.92454 0.75126 0.90638 0.87992 0.90069 0.89622
0.74688 0.85441 0.82821 0.86149 0.91835 0.85455
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.06 7.92 71.98 0.57 -2.49 16
2 C 0.16 2.85 3.44 45.34 0.16 3.00 16
3 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16
4 C -0.09 -1.10 3.16 -9.61 -0.03 -1.14 16
5 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16
6 C 0.09 0.83 5.17 71.98 0.37 1.20 16
7 O -0.59 -5.95 13.51 -148.98 -2.01 -7.96 16
8 C -0.11 -1.32 6.39 31.99 0.20 -1.12 16
9 C 0.09 1.28 6.62 86.86 0.58 1.85 16
10 N -0.63 -13.92 3.08 -805.88 -2.48 -16.40 16
11 C 0.72 22.33 8.00 179.06 1.43 23.76 16
12 O -0.60 -23.08 12.96 -4.00 -0.05 -23.13 16
13 N -0.67 -20.99 5.30 -317.23 -1.68 -22.67 16
14 C 0.21 8.05 6.27 38.13 0.24 8.29 16
15 C -0.20 -7.65 8.65 22.42 0.19 -7.46 16
16 C -0.05 -1.85 10.03 22.23 0.22 -1.63 16
17 C -0.21 -9.51 9.99 22.41 0.22 -9.28 16
18 C 0.14 6.92 6.64 22.56 0.15 7.07 16
19 O -0.23 -13.57 9.76 -22.81 -0.22 -13.79 16
20 C -0.41 -23.79 9.44 67.92 0.64 -23.14 16
21 H 0.10 5.31 5.30 -2.91 -0.02 5.30 16
22 C -0.02 -1.27 5.49 84.83 0.47 -0.80 16
23 N -0.92 -56.32 13.67 21.61 0.30 -56.02 16
24 Si 1.02 42.15 29.55 68.60 2.03 44.18 16
25 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16
26 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16
27 H -0.25 -9.56 7.11 99.48 0.71 -8.86 16
28 C -0.26 -11.66 9.04 22.51 0.20 -11.46 16
29 H 0.06 1.06 7.58 -2.38 -0.02 1.04 16
30 H 0.04 1.12 6.76 -2.39 -0.02 1.10 16
31 H 0.09 1.16 6.65 -2.39 -0.02 1.14 16
32 H 0.06 0.45 7.58 -2.39 -0.02 0.43 16
33 H 0.06 0.53 6.62 -2.38 -0.02 0.51 16
34 H 0.40 0.69 9.12 -74.06 -0.68 0.01 16
35 H 0.07 0.96 8.02 -2.38 -0.02 0.94 16
36 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16
37 H 0.08 1.12 7.22 -2.39 -0.02 1.11 16
38 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16
39 H 0.42 10.34 7.27 -92.71 -0.67 9.67 16
40 H 0.13 4.78 6.45 -2.91 -0.02 4.76 16
41 H 0.15 4.52 8.06 -2.91 -0.02 4.50 16
42 H 0.12 5.15 8.06 -2.91 -0.02 5.13 16
43 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16
44 H 0.13 5.60 5.72 -2.91 -0.02 5.59 16
Total: -1.00 -78.73 356.68 1.20 -77.53
By element:
Atomic # 1 Polarization: 31.90 SS G_CDS: -0.29 Total: 31.60 kcal
Atomic # 6 Polarization: -18.95 SS G_CDS: 5.62 Total: -13.33 kcal
Atomic # 7 Polarization: -91.23 SS G_CDS: -3.87 Total: -95.09 kcal
Atomic # 8 Polarization: -42.60 SS G_CDS: -2.29 Total: -44.88 kcal
Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal
Total: -78.73 1.20 -77.53 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001365034560.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -15.030 kcal
(2) G-P(sol) polarization free energy of solvation -78.726 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.756 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.200 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.526 kcal
(6) G-S(sol) free energy of system = (1) + (5) -92.556 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds