Wall clock time and date at job start Tue Mar 31 2020 12:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.86614 * 2 1 4 4 O 1.43739 * 110.00235 * 238.91684 * 2 1 3 5 5 C 1.44381 * 106.97509 * 267.01614 * 4 2 1 6 6 C 1.55219 * 103.56399 * 320.01086 * 5 4 2 7 7 C 1.54098 * 109.88267 * 121.00719 * 2 1 3 8 8 O 1.42898 * 110.48656 * 358.73562 * 7 2 1 9 9 C 1.52999 * 110.48728 * 236.22289 * 7 2 1 10 10 N 1.46500 * 109.46987 * 186.84339 * 9 7 2 11 11 C 1.34773 * 120.00013 * 179.97438 * 10 9 7 12 12 O 1.21587 * 120.00129 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99925 * 180.27771 * 11 10 9 14 14 C 1.39965 * 120.00030 * 174.57280 * 13 11 10 15 15 C 1.39279 * 119.94499 * 325.51395 * 14 13 11 16 16 C 1.38495 * 120.42869 * 179.76228 * 15 14 13 17 17 C 1.37678 * 120.31651 * 0.51105 * 16 15 14 18 18 C 1.40745 * 119.88757 * 359.74392 * 17 16 15 19 19 C 1.41413 * 120.21206 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99656 * 205.17158 * 19 18 17 21 21 C 1.39932 * 119.99668 * 25.17617 * 19 18 17 22 22 N 1.30830 * 120.00448 * 16.78377 * 21 19 18 23 23 Si 1.86805 * 119.99443 * 196.79264 * 21 19 18 24 24 H 1.48491 * 109.47358 * 89.99853 * 23 21 19 25 25 H 1.48503 * 109.46875 * 209.99773 * 23 21 19 26 26 H 1.48498 * 109.46950 * 329.99192 * 23 21 19 27 27 C 1.38230 * 119.94460 * 145.78251 * 14 13 11 28 28 H 1.09001 * 109.47122 * 298.99094 * 1 2 3 29 29 H 1.09001 * 109.47622 * 58.99045 * 1 2 3 30 30 H 1.09002 * 109.46977 * 178.99621 * 1 2 3 31 31 H 1.09003 * 110.61930 * 78.43735 * 5 4 2 32 32 H 1.09000 * 110.62058 * 201.27680 * 5 4 2 33 33 H 1.08995 * 110.89569 * 278.74431 * 6 5 4 34 34 H 1.09007 * 111.02215 * 155.07100 * 6 5 4 35 35 H 0.96697 * 113.99830 * 178.15769 * 8 7 2 36 36 H 1.09001 * 109.47479 * 66.84305 * 9 7 2 37 37 H 1.09003 * 109.47033 * 306.84288 * 9 7 2 38 38 H 0.97005 * 120.00215 * 359.97438 * 10 9 7 39 39 H 0.97001 * 120.00356 * 354.57197 * 13 11 10 40 40 H 1.07998 * 119.79108 * 359.97438 * 15 14 13 41 41 H 1.07998 * 119.84339 * 180.25350 * 16 15 14 42 42 H 1.08004 * 120.06053 * 179.76859 * 17 16 15 43 43 H 0.96999 * 120.00155 * 179.97438 * 22 21 19 44 44 H 1.08002 * 120.16464 * 359.96559 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0217 -0.6973 -1.1568 5 6 2.2334 -2.0702 -0.7630 6 6 2.8350 -1.9512 0.6629 7 6 2.0541 -0.7465 1.2420 8 8 0.9657 -1.1979 2.0505 9 6 2.9855 0.1547 2.0551 10 7 3.5974 -0.6231 3.1353 11 6 4.4605 -0.0327 3.9854 12 8 4.7318 1.1454 3.8556 13 7 5.0277 -0.7497 4.9757 14 6 6.0085 -0.1682 5.7875 15 6 6.8990 0.7567 5.2477 16 6 7.8702 1.3420 6.0429 17 6 7.9725 1.0075 7.3745 18 6 7.0829 0.0705 7.9326 19 6 7.1814 -0.2777 9.2996 20 1 6.8169 -1.2355 9.6405 21 6 7.7512 0.6188 10.2106 22 7 7.8907 1.8790 9.8881 23 14 8.3127 0.0160 11.8871 24 1 9.7305 -0.4181 11.8077 25 1 8.1866 1.1163 12.8765 26 1 7.4672 -1.1292 12.3101 27 6 6.0952 -0.5169 7.1223 28 1 -0.3633 0.4981 0.8989 29 1 -0.3634 0.5294 -0.8808 30 1 -0.3633 -1.0275 -0.0180 31 1 1.2878 -2.6116 -0.7347 32 1 2.9345 -2.5597 -1.4389 33 1 3.9028 -1.7371 0.6177 34 1 2.6449 -2.8536 1.2441 35 1 1.2373 -1.6990 2.8316 36 1 2.4134 0.9794 2.4803 37 1 3.7660 0.5509 1.4055 38 1 3.3813 -1.5631 3.2386 39 1 4.7563 -1.6688 5.1259 40 1 6.8297 1.0219 4.2031 41 1 8.5533 2.0611 5.6154 42 1 8.7338 1.4637 7.9900 43 1 8.2853 2.5005 10.5197 44 1 5.4075 -1.2368 7.5408 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365201427.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:25 Heat of formation + Delta-G solvation = -100.831086 kcal Electronic energy + Delta-G solvation = -26498.559573 eV Core-core repulsion = 22608.697005 eV Total energy + Delta-G solvation = -3889.862568 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.84403 -39.78610 -37.49526 -36.76967 -34.59014 -34.21611 -33.04785 -31.69414 -31.38071 -29.82157 -28.73434 -27.41477 -25.22795 -24.50034 -22.61352 -21.46568 -20.94022 -20.90069 -20.11683 -18.41128 -17.72441 -17.22268 -16.99963 -16.23594 -15.70332 -15.44587 -15.26640 -14.86528 -14.64064 -14.44038 -14.22214 -13.98474 -13.80303 -13.41681 -13.11355 -13.01837 -12.88802 -12.35241 -12.21742 -12.18752 -11.87970 -11.67226 -11.56262 -11.20043 -11.17881 -11.00538 -10.90397 -10.52009 -10.44475 -10.24168 -10.05963 -9.65546 -9.57558 -9.23127 -9.11957 -8.97006 -7.45728 -6.90908 -6.71375 -4.35730 2.67400 2.81637 2.89351 3.07895 3.10845 3.22587 3.45886 3.55118 3.65607 3.93803 4.01554 4.11778 4.31174 4.54038 4.66749 4.71309 4.79349 4.99819 5.06782 5.20949 5.28210 5.36902 5.49290 5.54863 5.64267 5.69190 5.73210 6.01750 6.26713 6.33165 6.43639 6.55814 6.67529 6.80638 6.93990 7.04495 7.13102 7.23012 7.32967 7.62052 7.78593 8.03314 8.08174 8.23434 8.36783 8.62887 8.86055 8.90739 9.00294 10.21780 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.033766 B = 0.002232 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.032611 B =12539.331398 C =12765.532165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.089 3.911 3 H 0.106 0.894 4 O -0.367 6.367 5 C 0.050 3.950 6 C -0.184 4.184 7 C 0.095 3.905 8 O -0.542 6.542 9 C 0.122 3.878 10 N -0.752 5.752 11 C 0.700 3.300 12 O -0.567 6.567 13 N -0.679 5.679 14 C 0.170 3.830 15 C -0.226 4.226 16 C -0.095 4.095 17 C -0.169 4.169 18 C 0.123 3.877 19 C -0.465 4.465 20 H 0.077 0.923 21 C 0.076 3.924 22 N -0.794 5.794 23 Si 0.909 3.091 24 H -0.268 1.268 25 H -0.278 1.278 26 H -0.263 1.263 27 C -0.245 4.245 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.377 0.623 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.389 0.611 39 H 0.395 0.605 40 H 0.100 0.900 41 H 0.091 0.909 42 H 0.119 0.881 43 H 0.280 0.720 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.902 -8.623 -15.413 20.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.031 3.969 3 H 0.124 0.876 4 O -0.286 6.286 5 C -0.027 4.027 6 C -0.222 4.222 7 C 0.053 3.947 8 O -0.348 6.348 9 C -0.003 4.003 10 N -0.410 5.410 11 C 0.401 3.599 12 O -0.442 6.442 13 N -0.325 5.325 14 C 0.078 3.922 15 C -0.247 4.247 16 C -0.114 4.114 17 C -0.189 4.189 18 C 0.120 3.880 19 C -0.495 4.495 20 H 0.095 0.905 21 C -0.142 4.142 22 N -0.419 5.419 23 Si 0.733 3.267 24 H -0.193 1.193 25 H -0.204 1.204 26 H -0.187 1.187 27 C -0.267 4.267 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.226 0.774 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.223 0.777 39 H 0.229 0.771 40 H 0.118 0.882 41 H 0.109 0.891 42 H 0.137 0.863 43 H 0.091 0.909 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.907 -6.880 -16.139 20.658 hybrid contribution 0.250 -1.474 1.629 2.211 sum -10.657 -8.354 -14.510 19.847 Atomic orbital electron populations 1.21938 0.94080 1.02988 1.02223 1.22666 0.95440 0.96370 0.82437 0.87594 1.88967 1.85974 1.20979 1.32672 1.23532 1.00032 0.84406 0.94707 1.23896 1.01667 0.98710 0.97898 1.22790 0.86543 0.93584 0.91793 1.86611 1.32441 1.75416 1.40300 1.21789 0.95889 0.94051 0.88580 1.45030 1.49772 1.13276 1.32945 1.15919 0.79033 0.85223 0.79768 1.90968 1.64913 1.14066 1.74232 1.42597 1.41500 1.15366 1.33086 1.17211 0.88513 0.97460 0.89049 1.20308 1.00040 1.05245 0.99120 1.20583 0.97541 0.98721 0.94515 1.21370 1.01436 1.02702 0.93370 1.17362 0.88402 0.89732 0.92543 1.19506 1.35471 1.02442 0.92086 0.90511 1.25891 0.93404 0.94155 1.00730 1.69835 1.32537 1.02835 1.36725 0.86311 0.79962 0.79413 0.80982 1.19310 1.20372 1.18718 1.20666 1.04030 1.10491 0.91532 0.90876 0.92249 0.91963 0.91840 0.88676 0.89030 0.89376 0.77448 0.90359 0.90284 0.77747 0.77149 0.88150 0.89069 0.86320 0.90894 0.88777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 8.57 37.16 0.32 -0.99 16 2 C 0.09 0.80 3.75 -26.16 -0.10 0.70 16 3 H 0.11 0.91 7.69 -51.93 -0.40 0.51 16 4 O -0.37 -3.65 11.20 -35.23 -0.39 -4.04 16 5 C 0.05 0.36 7.67 38.33 0.29 0.66 16 6 C -0.18 -1.24 5.72 -24.60 -0.14 -1.38 16 7 C 0.09 0.76 1.04 -89.09 -0.09 0.67 16 8 O -0.54 -4.19 11.22 -35.23 -0.40 -4.59 16 9 C 0.12 1.28 4.54 -4.04 -0.02 1.26 16 10 N -0.75 -8.36 5.12 -65.23 -0.33 -8.69 16 11 C 0.70 11.95 8.29 -86.92 -0.72 11.23 16 12 O -0.57 -12.42 14.09 5.29 0.07 -12.35 16 13 N -0.68 -11.72 5.34 -14.27 -0.08 -11.80 16 14 C 0.17 3.82 6.25 -83.76 -0.52 3.29 16 15 C -0.23 -5.42 8.66 -39.10 -0.34 -5.76 16 16 C -0.09 -2.32 10.02 -39.69 -0.40 -2.72 16 17 C -0.17 -4.46 8.69 -38.84 -0.34 -4.79 16 18 C 0.12 3.26 5.57 -106.85 -0.59 2.66 16 19 C -0.47 -12.22 9.05 -37.74 -0.34 -12.56 16 20 H 0.08 1.92 7.90 -52.49 -0.41 1.51 16 21 C 0.08 1.90 5.16 -17.34 -0.09 1.81 16 22 N -0.79 -20.71 10.94 55.55 0.61 -20.10 16 23 Si 0.91 18.57 29.59 -169.99 -5.03 13.54 16 24 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 25 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 26 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 27 C -0.25 -5.88 9.70 -38.69 -0.38 -6.26 16 28 H 0.07 0.63 7.85 -51.93 -0.41 0.22 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.54 7.90 -51.93 -0.41 0.13 16 31 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 32 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.69 7.87 -51.93 -0.41 0.28 16 34 H 0.09 0.44 8.08 -51.93 -0.42 0.02 16 35 H 0.38 1.92 8.25 45.56 0.38 2.29 16 36 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.39 2.92 7.41 -40.82 -0.30 2.62 16 39 H 0.40 5.19 8.83 -40.82 -0.36 4.83 16 40 H 0.10 2.40 6.48 -52.49 -0.34 2.06 16 41 H 0.09 2.02 8.06 -52.49 -0.42 1.60 16 42 H 0.12 3.21 6.17 -52.48 -0.32 2.88 16 43 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 44 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 361.03 15.07 5.44 5.44 Total: -1.00 -32.65 361.03 -9.07 -41.72 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -5.50 Total: 13.04 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -3.46 Total: -12.17 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: 0.20 Total: -40.60 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.72 Total: -20.98 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.65 -9.07 -41.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365201427.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.111 kcal (2) G-P(sol) polarization free energy of solvation -32.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds