Wall clock time and date at job start Tue Mar 31 2020 12:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.86614 * 2 1 4 4 O 1.43739 * 110.00235 * 238.91684 * 2 1 3 5 5 C 1.44381 * 106.97509 * 267.01614 * 4 2 1 6 6 C 1.55219 * 103.56399 * 320.01086 * 5 4 2 7 7 C 1.54098 * 109.88267 * 121.00719 * 2 1 3 8 8 O 1.42898 * 110.48656 * 358.73562 * 7 2 1 9 9 C 1.52999 * 110.48728 * 236.22289 * 7 2 1 10 10 N 1.46500 * 109.46987 * 186.84339 * 9 7 2 11 11 C 1.34773 * 120.00013 * 179.97438 * 10 9 7 12 12 O 1.21587 * 120.00129 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99925 * 180.27771 * 11 10 9 14 14 C 1.39965 * 120.00030 * 174.57280 * 13 11 10 15 15 C 1.39279 * 119.94499 * 325.51395 * 14 13 11 16 16 C 1.38495 * 120.42869 * 179.76228 * 15 14 13 17 17 C 1.37678 * 120.31651 * 0.51105 * 16 15 14 18 18 C 1.40745 * 119.88757 * 359.74392 * 17 16 15 19 19 C 1.41413 * 120.21206 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99656 * 205.17158 * 19 18 17 21 21 C 1.39932 * 119.99668 * 25.17617 * 19 18 17 22 22 N 1.30830 * 120.00448 * 16.78377 * 21 19 18 23 23 Si 1.86805 * 119.99443 * 196.79264 * 21 19 18 24 24 H 1.48491 * 109.47358 * 89.99853 * 23 21 19 25 25 H 1.48503 * 109.46875 * 209.99773 * 23 21 19 26 26 H 1.48498 * 109.46950 * 329.99192 * 23 21 19 27 27 C 1.38230 * 119.94460 * 145.78251 * 14 13 11 28 28 H 1.09001 * 109.47122 * 298.99094 * 1 2 3 29 29 H 1.09001 * 109.47622 * 58.99045 * 1 2 3 30 30 H 1.09002 * 109.46977 * 178.99621 * 1 2 3 31 31 H 1.09003 * 110.61930 * 78.43735 * 5 4 2 32 32 H 1.09000 * 110.62058 * 201.27680 * 5 4 2 33 33 H 1.08995 * 110.89569 * 278.74431 * 6 5 4 34 34 H 1.09007 * 111.02215 * 155.07100 * 6 5 4 35 35 H 0.96697 * 113.99830 * 178.15769 * 8 7 2 36 36 H 1.09001 * 109.47479 * 66.84305 * 9 7 2 37 37 H 1.09003 * 109.47033 * 306.84288 * 9 7 2 38 38 H 0.97005 * 120.00215 * 359.97438 * 10 9 7 39 39 H 0.97001 * 120.00356 * 354.57197 * 13 11 10 40 40 H 1.07998 * 119.79108 * 359.97438 * 15 14 13 41 41 H 1.07998 * 119.84339 * 180.25350 * 16 15 14 42 42 H 1.08004 * 120.06053 * 179.76859 * 17 16 15 43 43 H 0.96999 * 120.00155 * 179.97438 * 22 21 19 44 44 H 1.08002 * 120.16464 * 359.96559 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0217 -0.6973 -1.1568 5 6 2.2334 -2.0702 -0.7630 6 6 2.8350 -1.9512 0.6629 7 6 2.0541 -0.7465 1.2420 8 8 0.9657 -1.1979 2.0505 9 6 2.9855 0.1547 2.0551 10 7 3.5974 -0.6231 3.1353 11 6 4.4605 -0.0327 3.9854 12 8 4.7318 1.1454 3.8556 13 7 5.0277 -0.7497 4.9757 14 6 6.0085 -0.1682 5.7875 15 6 6.8990 0.7567 5.2477 16 6 7.8702 1.3420 6.0429 17 6 7.9725 1.0075 7.3745 18 6 7.0829 0.0705 7.9326 19 6 7.1814 -0.2777 9.2996 20 1 6.8169 -1.2355 9.6405 21 6 7.7512 0.6188 10.2106 22 7 7.8907 1.8790 9.8881 23 14 8.3127 0.0160 11.8871 24 1 9.7305 -0.4181 11.8077 25 1 8.1866 1.1163 12.8765 26 1 7.4672 -1.1292 12.3101 27 6 6.0952 -0.5169 7.1223 28 1 -0.3633 0.4981 0.8989 29 1 -0.3634 0.5294 -0.8808 30 1 -0.3633 -1.0275 -0.0180 31 1 1.2878 -2.6116 -0.7347 32 1 2.9345 -2.5597 -1.4389 33 1 3.9028 -1.7371 0.6177 34 1 2.6449 -2.8536 1.2441 35 1 1.2373 -1.6990 2.8316 36 1 2.4134 0.9794 2.4803 37 1 3.7660 0.5509 1.4055 38 1 3.3813 -1.5631 3.2386 39 1 4.7563 -1.6688 5.1259 40 1 6.8297 1.0219 4.2031 41 1 8.5533 2.0611 5.6154 42 1 8.7338 1.4637 7.9900 43 1 8.2853 2.5005 10.5197 44 1 5.4075 -1.2368 7.5408 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365201427.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:24 Heat of formation + Delta-G solvation = -125.223148 kcal Electronic energy + Delta-G solvation = -26499.617293 eV Core-core repulsion = 22608.697005 eV Total energy + Delta-G solvation = -3890.920287 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.76737 -40.99817 -39.16794 -37.60887 -36.17780 -35.44795 -34.78328 -32.37316 -32.10480 -31.75052 -30.15056 -28.54296 -27.15664 -25.33362 -23.57818 -22.89256 -22.61590 -21.75049 -21.49080 -19.69460 -19.41885 -18.11491 -17.69370 -17.41141 -17.04207 -16.81993 -16.71330 -16.24276 -15.93485 -15.52082 -15.41165 -15.11198 -14.69938 -14.65599 -14.54157 -14.09919 -14.04537 -13.74611 -13.52124 -13.16723 -12.93579 -12.89175 -12.82714 -12.71458 -12.50274 -12.28577 -12.13835 -11.94070 -11.70550 -11.44091 -11.28350 -11.09110 -11.07700 -10.76827 -10.68938 -10.25217 -9.40050 -8.72682 -8.57480 -6.34009 0.95103 0.99187 1.41022 1.53327 1.54556 1.58790 2.14667 2.23273 2.78554 2.83817 2.96516 3.17842 3.38991 3.43621 3.74409 3.77935 4.07609 4.22281 4.33431 4.39119 4.43075 4.56635 4.60303 4.68162 4.70500 4.80968 4.93320 5.02491 5.03328 5.04463 5.06284 5.13399 5.20160 5.27634 5.34836 5.35637 5.73792 5.77595 5.81879 6.02808 6.10361 6.18236 6.37952 6.65139 6.70130 6.94514 6.98661 7.07027 7.54048 8.36614 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.033766 B = 0.002232 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.032611 B =12539.331398 C =12765.532165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.082 3.918 3 H 0.102 0.898 4 O -0.388 6.388 5 C 0.044 3.956 6 C -0.178 4.178 7 C 0.109 3.891 8 O -0.546 6.546 9 C 0.124 3.876 10 N -0.722 5.722 11 C 0.699 3.301 12 O -0.617 6.617 13 N -0.669 5.669 14 C 0.183 3.817 15 C -0.238 4.238 16 C -0.098 4.098 17 C -0.197 4.197 18 C 0.095 3.905 19 C -0.495 4.495 20 H 0.082 0.918 21 C 0.032 3.968 22 N -0.828 5.828 23 Si 0.986 3.014 24 H -0.262 1.262 25 H -0.272 1.272 26 H -0.255 1.255 27 C -0.253 4.253 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.114 0.886 35 H 0.390 0.610 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.412 0.588 39 H 0.418 0.582 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.103 0.897 43 H 0.287 0.713 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.956 -10.740 -15.385 22.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.024 3.976 3 H 0.120 0.880 4 O -0.307 6.307 5 C -0.032 4.032 6 C -0.216 4.216 7 C 0.067 3.933 8 O -0.354 6.354 9 C -0.001 4.001 10 N -0.380 5.380 11 C 0.399 3.601 12 O -0.496 6.496 13 N -0.317 5.317 14 C 0.089 3.911 15 C -0.260 4.260 16 C -0.117 4.117 17 C -0.217 4.217 18 C 0.092 3.908 19 C -0.524 4.524 20 H 0.100 0.900 21 C -0.182 4.182 22 N -0.454 5.454 23 Si 0.806 3.194 24 H -0.187 1.187 25 H -0.197 1.197 26 H -0.178 1.178 27 C -0.275 4.275 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.126 0.874 33 H 0.104 0.896 34 H 0.132 0.868 35 H 0.241 0.759 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.249 0.751 39 H 0.255 0.745 40 H 0.118 0.882 41 H 0.124 0.876 42 H 0.121 0.879 43 H 0.098 0.902 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -12.014 -9.078 -16.147 22.079 hybrid contribution 0.489 -0.810 1.485 1.761 sum -11.525 -9.888 -14.663 21.109 Atomic orbital electron populations 1.21877 0.93698 1.02885 1.02187 1.22724 0.95753 0.96458 0.82710 0.87973 1.88949 1.86131 1.22372 1.33263 1.23721 1.00844 0.83376 0.95258 1.23892 1.00944 0.98914 0.97857 1.22547 0.86129 0.93615 0.91045 1.86610 1.32251 1.75602 1.40974 1.21832 0.95805 0.94358 0.88090 1.44688 1.47668 1.14283 1.31365 1.16084 0.79425 0.84599 0.79960 1.90944 1.66714 1.16481 1.75436 1.42332 1.40463 1.16372 1.32520 1.17174 0.88606 0.96228 0.89119 1.20434 1.00489 1.05961 0.99085 1.20791 0.97970 0.98828 0.94102 1.21304 1.02177 1.04242 0.94007 1.17755 0.89196 0.90353 0.93506 1.19814 1.36969 1.03101 0.92560 0.89965 1.26819 0.92714 0.93933 1.04768 1.69908 1.32956 1.04092 1.38462 0.85153 0.79507 0.79027 0.75694 1.18701 1.19652 1.17847 1.20837 1.03899 1.10807 0.91979 0.91153 0.92045 0.92026 0.91092 0.87439 0.89580 0.86810 0.75920 0.91809 0.91317 0.75058 0.74477 0.88167 0.87558 0.87911 0.90216 0.86953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 8.57 71.98 0.62 -1.71 16 2 C 0.08 1.37 3.75 30.97 0.12 1.49 16 3 H 0.10 1.73 7.69 -2.39 -0.02 1.71 16 4 O -0.39 -7.20 11.20 -148.98 -1.67 -8.86 16 5 C 0.04 0.54 7.67 72.74 0.56 1.10 16 6 C -0.18 -1.90 5.72 31.97 0.18 -1.71 16 7 C 0.11 1.53 1.04 -9.81 -0.01 1.52 16 8 O -0.55 -6.97 11.22 -148.98 -1.67 -8.64 16 9 C 0.12 2.45 4.54 86.38 0.39 2.84 16 10 N -0.72 -14.41 5.12 -478.54 -2.45 -16.86 16 11 C 0.70 22.85 8.29 179.06 1.48 24.34 16 12 O -0.62 -26.94 14.09 -3.99 -0.06 -27.00 16 13 N -0.67 -21.85 5.34 -317.33 -1.69 -23.55 16 14 C 0.18 8.11 6.25 38.09 0.24 8.35 16 15 C -0.24 -11.50 8.66 22.58 0.20 -11.31 16 16 C -0.10 -4.92 10.02 22.20 0.22 -4.70 16 17 C -0.20 -10.74 8.69 22.75 0.20 -10.54 16 18 C 0.09 5.13 5.57 -21.31 -0.12 5.01 16 19 C -0.49 -26.26 9.05 23.46 0.21 -26.05 16 20 H 0.08 4.11 7.90 -2.91 -0.02 4.09 16 21 C 0.03 1.62 5.16 85.25 0.44 2.06 16 22 N -0.83 -44.04 10.94 21.82 0.24 -43.80 16 23 Si 0.99 37.81 29.59 68.60 2.03 39.84 16 24 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 25 H -0.27 -10.03 7.11 99.48 0.71 -9.33 16 26 H -0.25 -9.36 7.11 99.48 0.71 -8.65 16 27 C -0.25 -12.08 9.70 22.85 0.22 -11.86 16 28 H 0.07 1.13 7.85 -2.39 -0.02 1.11 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 0.96 7.90 -2.39 -0.02 0.94 16 31 H 0.07 0.78 8.13 -2.39 -0.02 0.76 16 32 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.09 1.06 7.87 -2.39 -0.02 1.04 16 34 H 0.11 0.64 8.08 -2.38 -0.02 0.62 16 35 H 0.39 2.57 8.25 -74.06 -0.61 1.96 16 36 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.41 4.69 7.41 -92.70 -0.69 4.01 16 39 H 0.42 9.74 8.83 -92.71 -0.82 8.92 16 40 H 0.10 4.82 6.48 -2.91 -0.02 4.80 16 41 H 0.11 4.83 8.06 -2.91 -0.02 4.80 16 42 H 0.10 5.81 6.17 -2.91 -0.02 5.79 16 43 H 0.29 13.83 8.30 -92.71 -0.77 13.06 16 44 H 0.11 4.82 8.06 -2.91 -0.02 4.79 16 Total: -1.00 -72.35 361.03 -1.39 -73.73 By element: Atomic # 1 Polarization: 37.37 SS G_CDS: -1.06 Total: 36.31 kcal Atomic # 6 Polarization: -26.12 SS G_CDS: 4.95 Total: -21.17 kcal Atomic # 7 Polarization: -80.30 SS G_CDS: -3.91 Total: -84.21 kcal Atomic # 8 Polarization: -41.10 SS G_CDS: -3.40 Total: -44.50 kcal Atomic # 14 Polarization: 37.81 SS G_CDS: 2.03 Total: 39.84 kcal Total: -72.35 -1.39 -73.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365201427.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.488 kcal (2) G-P(sol) polarization free energy of solvation -72.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds