Wall clock time and date at job start Tue Mar 31 2020 13:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47207 * 2 1 4 4 C 1.52996 * 109.47153 * 120.00298 * 2 1 3 5 5 C 1.50706 * 109.47215 * 185.00064 * 4 2 1 6 6 O 1.20825 * 119.99859 * 359.97438 * 5 4 2 7 7 O 1.34224 * 120.00295 * 180.02562 * 5 4 2 8 8 N 1.46505 * 109.46900 * 240.00242 * 2 1 3 9 9 C 1.34778 * 120.00101 * 84.99890 * 8 2 1 10 10 O 1.21592 * 119.99652 * 0.02562 * 9 8 2 11 11 N 1.34774 * 119.99891 * 179.97438 * 9 8 2 12 12 C 1.46503 * 119.99681 * 179.97438 * 11 9 8 13 13 H 1.09003 * 109.47266 * 35.00089 * 12 11 9 14 14 C 1.52996 * 109.46863 * 155.00353 * 12 11 9 15 15 C 1.50697 * 109.47347 * 294.99920 * 14 12 11 16 16 H 1.08003 * 119.99976 * 0.02562 * 15 14 12 17 17 C 1.37877 * 120.00011 * 179.97438 * 15 14 12 18 18 N 1.31515 * 120.00069 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99863 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47240 * 60.00211 * 19 17 15 21 21 H 1.48505 * 109.47332 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47314 * 300.00131 * 19 17 15 23 23 C 1.50701 * 109.47391 * 275.00426 * 12 11 9 24 24 C 1.38233 * 119.99704 * 319.73088 * 23 12 11 25 25 C 1.38239 * 119.99920 * 179.78595 * 24 23 12 26 26 C 1.38229 * 119.99845 * 0.44344 * 25 24 23 27 27 C 1.38244 * 120.00254 * 359.80572 * 26 25 24 28 28 C 1.38229 * 119.99578 * 359.97438 * 27 26 25 29 29 H 1.09000 * 109.46927 * 299.99520 * 1 2 3 30 30 H 1.08998 * 109.47551 * 59.99782 * 1 2 3 31 31 H 1.09006 * 109.47016 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47192 * 65.00150 * 4 2 1 33 33 H 1.09000 * 109.47459 * 305.00229 * 4 2 1 34 34 H 0.96700 * 117.00196 * 179.97438 * 7 5 4 35 35 H 0.96997 * 119.99794 * 264.99465 * 8 2 1 36 36 H 0.96995 * 119.99864 * 0.02562 * 11 9 8 37 37 H 1.09004 * 109.47234 * 55.00073 * 14 12 11 38 38 H 1.09007 * 109.47020 * 174.99702 * 14 12 11 39 39 H 0.97000 * 119.99618 * 179.97438 * 18 17 15 40 40 H 1.08004 * 120.00504 * 359.97438 * 24 23 12 41 41 H 1.08002 * 120.00464 * 180.26672 * 25 24 23 42 42 H 1.08002 * 120.00468 * 179.83591 * 26 25 24 43 43 H 1.07995 * 120.00160 * 180.02562 * 27 26 25 44 44 H 1.08000 * 120.00437 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6149 1.3127 6 8 4.1428 -0.0234 0.4473 7 8 4.2123 -1.1783 2.3300 8 7 2.0183 -0.6906 -1.1963 9 6 2.1470 -0.0182 -2.3572 10 8 1.8582 1.1617 -2.4116 11 7 2.5967 -0.6534 -3.4575 12 6 2.7360 0.0774 -4.7196 13 1 3.0460 1.1019 -4.5139 14 6 3.7888 -0.6086 -5.5925 15 6 5.1361 -0.5111 -4.9246 16 1 5.2319 -0.0104 -3.9724 17 6 6.2464 -1.0621 -5.5285 18 7 6.1297 -1.6723 -6.6876 19 14 7.9164 -0.9419 -4.7001 20 1 7.8607 -1.6092 -3.3746 21 1 8.9381 -1.6087 -5.5468 22 1 8.2780 0.4871 -4.5201 23 6 1.4137 0.0882 -5.4425 24 6 0.6231 -1.0456 -5.4540 25 6 -0.5919 -1.0343 -6.1134 26 6 -1.0119 0.1079 -6.7688 27 6 -0.2189 1.2402 -6.7616 28 6 0.9939 1.2303 -6.0985 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7517 -1.7715 1.2055 33 1 1.6054 -0.2619 2.1370 34 1 5.1746 -1.0839 2.3274 35 1 2.2490 -1.6317 -1.1527 36 1 2.8273 -1.5945 -3.4140 37 1 3.5238 -1.6576 -5.7246 38 1 3.8293 -0.1187 -6.5655 39 1 6.9109 -2.0596 -7.1126 40 1 0.9531 -1.9394 -4.9454 41 1 -1.2117 -1.9188 -6.1188 42 1 -1.9599 0.1160 -7.2862 43 1 -0.5473 2.1327 -7.2734 44 1 1.6134 2.1150 -6.0924 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589000478.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:30 Heat of formation + Delta-G solvation = -108.263537 kcal Electronic energy + Delta-G solvation = -27260.312418 eV Core-core repulsion = 23370.127554 eV Total energy + Delta-G solvation = -3890.184863 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.48987 -39.61340 -38.57214 -36.54324 -35.74454 -34.75454 -32.70666 -31.85887 -30.49520 -30.14363 -28.69784 -28.39533 -24.85706 -22.99027 -22.22288 -21.88869 -21.16454 -20.34242 -19.68966 -18.10583 -17.95443 -16.84858 -16.56966 -16.41318 -16.07867 -15.61361 -14.86437 -14.79348 -14.52400 -14.32818 -13.97091 -13.73715 -13.31935 -13.01239 -12.91177 -12.74917 -12.61427 -12.46580 -12.33338 -12.04586 -11.99122 -11.55627 -11.45255 -11.12284 -11.06938 -10.85328 -10.66593 -10.58912 -10.57085 -10.37097 -9.70057 -9.55334 -9.22808 -8.83176 -8.47137 -8.39716 -8.20097 -8.09882 -6.03142 -4.05438 1.85007 1.87049 2.15571 2.88261 3.18312 3.33381 3.37161 3.42267 3.85455 4.27409 4.40563 4.45661 4.75844 4.87784 5.00893 5.24123 5.32043 5.32993 5.33554 5.34585 5.42740 5.44054 5.61602 5.63580 5.96455 5.97995 6.01419 6.18521 6.24568 6.42840 6.43438 6.50158 6.67216 6.81926 6.90757 6.92185 7.06780 7.19663 7.40582 7.47633 7.58575 7.76041 7.81916 7.94925 8.33549 8.63802 9.01022 9.24139 9.59190 11.07424 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.007366 B = 0.005721 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3800.559317 B = 4893.291649 C = 8165.874992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.173 3.827 3 H 0.096 0.904 4 C -0.121 4.121 5 C 0.465 3.535 6 O -0.487 6.487 7 O -0.525 6.525 8 N -0.743 5.743 9 C 0.711 3.289 10 O -0.597 6.597 11 N -0.717 5.717 12 C 0.202 3.798 13 H 0.086 0.914 14 C 0.024 3.976 15 C -0.516 4.516 16 H 0.058 0.942 17 C 0.060 3.940 18 N -0.894 5.894 19 Si 0.892 3.108 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.068 4.068 24 C -0.106 4.106 25 C -0.126 4.126 26 C -0.137 4.137 27 C -0.123 4.123 28 C -0.108 4.108 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.109 0.891 33 H 0.118 0.882 34 H 0.410 0.590 35 H 0.390 0.610 36 H 0.395 0.605 37 H 0.023 0.977 38 H 0.034 0.966 39 H 0.261 0.739 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.115 0.885 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.673 -1.547 13.358 18.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.067 3.933 3 H 0.114 0.886 4 C -0.159 4.159 5 C 0.306 3.694 6 O -0.372 6.372 7 O -0.338 6.338 8 N -0.399 5.399 9 C 0.412 3.588 10 O -0.476 6.476 11 N -0.369 5.369 12 C 0.097 3.903 13 H 0.104 0.896 14 C -0.013 4.013 15 C -0.555 4.555 16 H 0.077 0.923 17 C -0.142 4.142 18 N -0.533 5.533 19 Si 0.720 3.280 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.202 1.202 23 C -0.070 4.070 24 C -0.125 4.125 25 C -0.144 4.144 26 C -0.155 4.155 27 C -0.141 4.141 28 C -0.126 4.126 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.127 0.873 33 H 0.136 0.864 34 H 0.269 0.731 35 H 0.223 0.777 36 H 0.228 0.772 37 H 0.042 0.958 38 H 0.052 0.948 39 H 0.071 0.929 40 H 0.133 0.867 41 H 0.131 0.869 42 H 0.130 0.870 43 H 0.133 0.867 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -13.068 -0.401 12.895 18.363 hybrid contribution 1.917 -0.918 0.433 2.169 sum -11.152 -1.320 13.327 17.427 Atomic orbital electron populations 1.22195 0.94635 1.02205 1.02993 1.20487 0.93533 0.97784 0.81522 0.88570 1.21757 0.87999 1.04864 1.01291 1.23456 0.91729 0.75654 0.78603 1.90885 1.70060 1.38477 1.37794 1.84494 1.27223 1.73131 1.48949 1.45004 1.72831 1.13088 1.08978 1.15865 0.77889 0.84959 0.80135 1.90855 1.57738 1.14319 1.84691 1.45085 1.69199 1.13802 1.08764 1.20092 0.90766 0.97719 0.81689 0.89627 1.19387 0.91506 0.95846 0.94556 1.21135 0.92196 1.36114 1.06006 0.92337 1.24974 0.99023 0.95281 0.94881 1.69955 1.30109 1.37271 1.15987 0.86656 0.83719 0.78380 0.79231 1.20396 1.21393 1.20222 1.20623 0.96731 0.93147 0.96489 1.20883 0.94282 0.97922 0.99382 1.21022 0.96711 0.97883 0.98816 1.20972 0.99721 0.93787 1.00988 1.21030 0.95038 0.98050 1.00026 1.21022 0.96085 0.97949 0.97574 0.91762 0.91124 0.92422 0.87275 0.86379 0.73097 0.77716 0.77167 0.95840 0.94763 0.92925 0.86700 0.86887 0.86958 0.86694 0.86216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 9.48 37.16 0.35 -1.23 16 2 C 0.17 2.02 2.14 -67.93 -0.15 1.88 16 3 H 0.10 1.43 7.39 -51.93 -0.38 1.05 16 4 C -0.12 -0.98 5.35 -27.88 -0.15 -1.13 16 5 C 0.47 5.24 8.19 36.01 0.29 5.53 16 6 O -0.49 -8.02 16.11 -18.75 -0.30 -8.32 16 7 O -0.53 -4.61 13.42 -39.24 -0.53 -5.14 16 8 N -0.74 -10.49 4.22 -58.67 -0.25 -10.73 16 9 C 0.71 13.44 8.49 -86.92 -0.74 12.71 16 10 O -0.60 -13.44 15.67 5.28 0.08 -13.35 16 11 N -0.72 -13.65 4.05 -59.81 -0.24 -13.90 16 12 C 0.20 4.32 2.11 -69.08 -0.15 4.18 16 13 H 0.09 2.04 7.44 -51.93 -0.39 1.65 16 14 C 0.02 0.60 4.49 -27.89 -0.13 0.48 16 15 C -0.52 -14.20 8.84 -34.44 -0.30 -14.51 16 16 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 19 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 C -0.07 -1.32 4.91 -104.62 -0.51 -1.83 16 24 C -0.11 -1.84 9.32 -39.58 -0.37 -2.21 16 25 C -0.13 -1.92 10.05 -39.58 -0.40 -2.32 16 26 C -0.14 -2.00 10.05 -39.58 -0.40 -2.40 16 27 C -0.12 -1.92 10.05 -39.58 -0.40 -2.32 16 28 C -0.11 -1.95 9.67 -39.59 -0.38 -2.33 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.12 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.41 2.37 9.10 45.56 0.41 2.78 16 35 H 0.39 4.58 8.62 -40.82 -0.35 4.23 16 36 H 0.39 6.92 8.62 -40.82 -0.35 6.56 16 37 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.03 0.92 8.14 -51.92 -0.42 0.50 16 39 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.11 1.86 7.73 -52.48 -0.41 1.46 16 41 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 42 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 43 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 44 H 0.12 2.10 8.04 -52.49 -0.42 1.68 16 LS Contribution 380.36 15.07 5.73 5.73 Total: -1.00 -36.32 380.36 -8.96 -45.28 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -5.66 Total: 12.93 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -3.52 Total: -3.92 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: 0.25 Total: -50.07 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -0.75 Total: -26.82 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.32 -8.96 -45.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589000478.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.981 kcal (2) G-P(sol) polarization free energy of solvation -36.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds