Wall clock time and date at job start Tue Mar 31 2020 13:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.47176 * 2 1 4 4 C 1.53002 * 109.46926 * 120.00278 * 2 1 3 5 5 C 1.50706 * 109.46709 * 185.00142 * 4 2 1 6 6 O 1.20828 * 120.00074 * 359.97438 * 5 4 2 7 7 O 1.34230 * 119.99574 * 180.02562 * 5 4 2 8 8 N 1.46506 * 109.46750 * 239.99788 * 2 1 3 9 9 C 1.34771 * 119.99515 * 85.00464 * 8 2 1 10 10 O 1.21583 * 120.00543 * 0.26795 * 9 8 2 11 11 N 1.34784 * 119.99547 * 179.97438 * 9 8 2 12 12 C 1.46499 * 119.99971 * 179.97438 * 11 9 8 13 13 H 1.09007 * 109.46956 * 325.00197 * 12 11 9 14 14 C 1.52999 * 109.47155 * 205.00183 * 12 11 9 15 15 C 1.50699 * 109.47123 * 65.00154 * 14 12 11 16 16 H 1.08000 * 120.00148 * 359.97438 * 15 14 12 17 17 C 1.37875 * 119.99668 * 180.02562 * 15 14 12 18 18 N 1.31518 * 120.00094 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00138 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46721 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47023 * 119.99588 * 19 17 15 22 22 H 1.48492 * 109.47153 * 240.00173 * 19 17 15 23 23 C 1.50701 * 109.47118 * 84.99565 * 12 11 9 24 24 C 1.38242 * 119.99723 * 39.73149 * 23 12 11 25 25 C 1.38232 * 119.99896 * 179.78464 * 24 23 12 26 26 C 1.38237 * 120.00049 * 0.43906 * 25 24 23 27 27 C 1.38239 * 120.00140 * 359.81435 * 26 25 24 28 28 C 1.38237 * 120.00201 * 219.99877 * 23 12 11 29 29 H 1.09002 * 109.46474 * 300.00202 * 1 2 3 30 30 H 1.08993 * 109.47243 * 60.00164 * 1 2 3 31 31 H 1.09002 * 109.46987 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46800 * 304.99333 * 4 2 1 33 33 H 1.08991 * 109.47380 * 64.99598 * 4 2 1 34 34 H 0.96700 * 116.99689 * 179.97438 * 7 5 4 35 35 H 0.96999 * 120.00076 * 265.00123 * 8 2 1 36 36 H 0.96999 * 120.00044 * 359.97438 * 11 9 8 37 37 H 1.09002 * 109.46897 * 185.00130 * 14 12 11 38 38 H 1.08995 * 109.47110 * 304.99454 * 14 12 11 39 39 H 0.97002 * 119.99585 * 180.02562 * 18 17 15 40 40 H 1.08002 * 119.99647 * 359.97438 * 24 23 12 41 41 H 1.07999 * 119.99878 * 180.27270 * 25 24 23 42 42 H 1.08002 * 120.00272 * 179.82923 * 26 25 24 43 43 H 1.07994 * 120.00554 * 179.97438 * 27 26 25 44 44 H 1.08001 * 119.99841 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5420 -0.6149 1.3127 6 8 4.1428 -0.0233 0.4473 7 8 4.2123 -1.1783 2.3301 8 7 2.0183 -0.6907 -1.1962 9 6 2.1471 -0.0183 -2.3571 10 8 1.8626 1.1626 -2.4105 11 7 2.5967 -0.6536 -3.4575 12 6 2.7362 0.0771 -4.7196 13 1 1.9391 0.8162 -4.8015 14 6 2.6440 -0.9042 -5.8898 15 6 1.2647 -1.5098 -5.9301 16 1 0.5276 -1.2238 -5.1944 17 6 0.9440 -2.4298 -6.9057 18 7 1.8417 -2.7785 -7.8014 19 14 -0.7655 -3.1812 -6.9553 20 1 -1.5821 -2.6270 -5.8456 21 1 -1.4103 -2.8591 -8.2536 22 1 -0.6630 -4.6550 -6.8056 23 6 4.0722 0.7735 -4.7519 24 6 5.1951 0.1380 -4.2555 25 6 6.4214 0.7751 -4.2892 26 6 6.5233 2.0512 -4.8109 27 6 5.3995 2.6888 -5.3024 28 6 4.1739 2.0500 -5.2727 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6055 -0.2617 2.1369 33 1 1.7516 -1.7715 1.2056 34 1 5.1746 -1.0839 2.3275 35 1 2.2490 -1.6319 -1.1527 36 1 2.8281 -1.5946 -3.4138 37 1 2.8360 -0.3753 -6.8234 38 1 3.3840 -1.6939 -5.7609 39 1 1.6160 -3.4255 -8.4879 40 1 5.1147 -0.8574 -3.8443 41 1 7.2994 0.2769 -3.9054 42 1 7.4809 2.5500 -4.8347 43 1 5.4789 3.6858 -5.7096 44 1 3.2959 2.5480 -5.6569 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589000480.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:37 Heat of formation + Delta-G solvation = -108.669907 kcal Electronic energy + Delta-G solvation = -27299.470179 eV Core-core repulsion = 23409.267694 eV Total energy + Delta-G solvation = -3890.202485 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.55797 -39.61522 -38.54095 -36.59164 -35.78132 -34.75464 -32.72473 -31.85739 -30.45338 -30.11814 -28.70791 -28.38395 -24.86200 -23.02008 -22.18777 -21.87255 -21.18764 -20.34780 -19.67448 -18.19842 -17.96397 -16.85230 -16.64048 -16.41487 -16.08066 -15.58643 -15.02950 -14.67488 -14.53905 -14.27794 -13.99153 -13.72734 -13.30996 -13.05594 -12.88932 -12.68814 -12.63716 -12.46206 -12.31708 -12.04180 -11.96004 -11.65023 -11.46041 -11.12407 -11.07565 -10.85011 -10.67304 -10.66972 -10.53803 -10.37687 -9.71404 -9.54963 -9.22797 -8.82561 -8.45716 -8.38920 -8.19647 -8.05676 -6.05801 -4.08495 1.90027 1.92746 2.06511 2.81128 3.19049 3.27328 3.35892 3.40268 3.85524 4.31923 4.39115 4.42641 4.75606 4.85429 5.00193 5.21820 5.30921 5.34903 5.37114 5.38655 5.43143 5.48873 5.65469 5.66629 5.97909 6.02817 6.05302 6.24219 6.26184 6.33035 6.47161 6.53831 6.67884 6.82105 6.95968 6.96501 7.08247 7.21883 7.40606 7.52667 7.57787 7.72904 7.76253 7.91899 8.30897 8.64020 8.97888 9.24386 9.56058 11.04867 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.008561 B = 0.004884 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3269.904299 B = 5731.929254 C = 8013.723685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.174 3.826 3 H 0.096 0.904 4 C -0.122 4.122 5 C 0.468 3.532 6 O -0.491 6.491 7 O -0.524 6.524 8 N -0.743 5.743 9 C 0.712 3.288 10 O -0.597 6.597 11 N -0.717 5.717 12 C 0.203 3.797 13 H 0.085 0.915 14 C 0.023 3.977 15 C -0.515 4.515 16 H 0.059 0.941 17 C 0.059 3.941 18 N -0.893 5.893 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.285 1.285 23 C -0.070 4.070 24 C -0.103 4.103 25 C -0.125 4.125 26 C -0.136 4.136 27 C -0.124 4.124 28 C -0.108 4.108 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.119 0.881 33 H 0.110 0.890 34 H 0.409 0.591 35 H 0.390 0.610 36 H 0.395 0.605 37 H 0.034 0.966 38 H 0.024 0.976 39 H 0.260 0.740 40 H 0.114 0.886 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.115 0.885 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.502 2.860 17.857 18.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.068 3.932 3 H 0.114 0.886 4 C -0.160 4.160 5 C 0.309 3.691 6 O -0.377 6.377 7 O -0.337 6.337 8 N -0.399 5.399 9 C 0.412 3.588 10 O -0.476 6.476 11 N -0.369 5.369 12 C 0.098 3.902 13 H 0.103 0.897 14 C -0.014 4.014 15 C -0.554 4.554 16 H 0.077 0.923 17 C -0.142 4.142 18 N -0.532 5.532 19 Si 0.719 3.281 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.211 1.211 23 C -0.071 4.071 24 C -0.121 4.121 25 C -0.143 4.143 26 C -0.154 4.154 27 C -0.142 4.142 28 C -0.127 4.127 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.137 0.863 33 H 0.128 0.872 34 H 0.268 0.732 35 H 0.223 0.777 36 H 0.228 0.772 37 H 0.053 0.947 38 H 0.042 0.958 39 H 0.070 0.930 40 H 0.132 0.868 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.133 0.867 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.990 3.981 17.375 18.266 hybrid contribution 0.036 -1.418 -0.065 1.420 sum 4.025 2.563 17.310 17.956 Atomic orbital electron populations 1.22213 0.94536 1.02429 1.03053 1.20484 0.93684 0.97622 0.81443 0.88624 1.21782 0.87838 1.05011 1.01395 1.23492 0.91764 0.75382 0.78479 1.90850 1.70128 1.38709 1.38008 1.84522 1.27100 1.73077 1.48956 1.45002 1.72883 1.13047 1.08981 1.15860 0.77867 0.84954 0.80150 1.90853 1.57838 1.14329 1.84586 1.45096 1.69570 1.13464 1.08769 1.20080 0.91703 0.94752 0.83624 0.89657 1.19402 0.97709 0.93117 0.91211 1.21183 0.97422 1.23602 1.13171 0.92313 1.24993 0.96992 0.96706 0.95548 1.69977 1.33791 1.33101 1.16326 0.86547 0.84708 0.78824 0.77992 1.19778 1.21022 1.21135 1.20605 0.96565 0.94086 0.95871 1.20862 0.92158 0.99603 0.99474 1.21011 0.97300 0.95418 1.00611 1.20963 0.98070 0.95580 1.00806 1.21016 0.92968 0.99583 1.00655 1.21002 0.97526 0.94515 0.99611 0.91795 0.90963 0.92271 0.86326 0.87164 0.73239 0.77713 0.77167 0.94738 0.95821 0.93000 0.86806 0.86958 0.86990 0.86724 0.86252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.48 37.16 0.35 -1.36 16 2 C 0.17 2.03 2.14 -67.92 -0.15 1.89 16 3 H 0.10 1.40 7.39 -51.93 -0.38 1.01 16 4 C -0.12 -0.94 5.36 -27.88 -0.15 -1.09 16 5 C 0.47 4.73 8.19 36.01 0.29 5.02 16 6 O -0.49 -7.21 16.11 -18.75 -0.30 -7.51 16 7 O -0.52 -3.96 13.42 -39.26 -0.53 -4.49 16 8 N -0.74 -10.48 4.22 -58.67 -0.25 -10.73 16 9 C 0.71 13.45 8.49 -86.92 -0.74 12.72 16 10 O -0.60 -13.45 15.67 5.29 0.08 -13.37 16 11 N -0.72 -13.67 4.02 -59.81 -0.24 -13.91 16 12 C 0.20 4.35 2.11 -69.08 -0.15 4.20 16 13 H 0.09 2.00 7.44 -51.92 -0.39 1.61 16 14 C 0.02 0.56 4.50 -27.88 -0.13 0.44 16 15 C -0.52 -13.79 8.84 -34.44 -0.30 -14.09 16 16 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -25.81 13.29 55.43 0.74 -25.07 16 19 Si 0.89 21.13 29.54 -169.99 -5.02 16.10 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 C -0.07 -1.39 4.92 -104.62 -0.51 -1.91 16 24 C -0.10 -1.89 9.33 -39.58 -0.37 -2.26 16 25 C -0.13 -2.06 10.05 -39.58 -0.40 -2.46 16 26 C -0.14 -2.12 10.05 -39.58 -0.40 -2.52 16 27 C -0.12 -2.03 10.05 -39.58 -0.40 -2.43 16 28 C -0.11 -2.02 9.67 -39.58 -0.38 -2.40 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.41 1.71 9.10 45.56 0.41 2.12 16 35 H 0.39 4.57 8.62 -40.82 -0.35 4.22 16 36 H 0.39 6.91 8.62 -40.82 -0.35 6.56 16 37 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 40 H 0.11 2.00 7.71 -52.49 -0.40 1.59 16 41 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 42 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 43 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 44 H 0.12 2.13 8.04 -52.49 -0.42 1.71 16 LS Contribution 380.34 15.07 5.73 5.73 Total: -1.00 -35.73 380.34 -8.96 -44.69 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -5.65 Total: 13.29 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -3.52 Total: -4.74 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: 0.25 Total: -49.71 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.75 Total: -25.37 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.73 -8.96 -44.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589000480.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.977 kcal (2) G-P(sol) polarization free energy of solvation -35.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds