Wall clock time and date at job start Tue Mar 31 2020 13:45:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.09004 * 109.47213 * 2 1
4 4 C 1.50696 * 109.47192 * 239.99807 * 2 1 3
5 5 H 1.07992 * 120.00475 * 274.99701 * 4 2 1
6 6 C 1.37886 * 119.99641 * 94.99265 * 4 2 1
7 7 N 1.31512 * 119.99851 * 184.91483 * 6 4 2
8 8 Si 1.86799 * 120.00204 * 4.92075 * 6 4 2
9 9 H 1.48499 * 109.47154 * 84.82657 * 8 6 4
10 10 H 1.48500 * 109.47077 * 204.83071 * 8 6 4
11 11 H 1.48502 * 109.46764 * 324.82975 * 8 6 4
12 12 N 1.46902 * 109.47087 * 119.99872 * 2 1 3
13 13 C 1.46899 * 111.00218 * 274.99865 * 12 2 1
14 14 H 1.09001 * 109.46706 * 35.00018 * 13 12 2
15 15 C 1.52998 * 109.47160 * 275.00361 * 13 12 2
16 16 C 1.50700 * 109.47252 * 154.99891 * 13 12 2
17 17 O 1.21278 * 119.99702 * 0.02562 * 16 13 12
18 18 N 1.34772 * 119.99993 * 179.97438 * 16 13 12
19 19 C 1.46500 * 120.00092 * 180.02562 * 18 16 13
20 20 C 1.50696 * 109.47537 * 180.02562 * 19 18 16
21 21 C 1.38363 * 119.85109 * 269.73180 * 20 19 18
22 22 C 1.37946 * 120.15192 * 179.72323 * 21 20 19
23 23 C 1.39622 * 119.84761 * 0.55999 * 22 21 20
24 24 C 1.47728 * 120.15222 * 179.68411 * 23 22 21
25 25 O 1.21472 * 120.00415 * 180.02562 * 24 23 22
26 26 O 1.34717 * 119.99755 * 0.02562 * 24 23 22
27 27 C 1.39631 * 119.70079 * 359.71128 * 23 22 21
28 28 C 1.37948 * 119.84547 * 359.97438 * 27 23 22
29 29 H 1.09007 * 109.47020 * 295.03461 * 1 2 3
30 30 H 1.08998 * 109.47341 * 55.03670 * 1 2 3
31 31 H 1.09001 * 109.47290 * 175.04254 * 1 2 3
32 32 H 0.97000 * 120.00268 * 180.02562 * 7 6 4
33 33 H 1.00899 * 111.00012 * 38.95563 * 12 2 1
34 34 H 1.09006 * 109.47222 * 179.97438 * 15 13 12
35 35 H 1.08998 * 109.47283 * 299.99910 * 15 13 12
36 36 H 1.08997 * 109.47241 * 59.99846 * 15 13 12
37 37 H 0.97004 * 120.00197 * 0.02562 * 18 16 13
38 38 H 1.08999 * 109.46988 * 300.00278 * 19 18 16
39 39 H 1.09001 * 109.47332 * 60.00300 * 19 18 16
40 40 H 1.08002 * 119.92372 * 359.96915 * 21 20 19
41 41 H 1.08004 * 120.07618 * 180.27416 * 22 21 20
42 42 H 0.96699 * 116.99704 * 179.97438 * 26 24 23
43 43 H 1.07996 * 120.07558 * 179.97438 * 27 23 22
44 44 H 1.08002 * 119.91887 * 179.97438 * 28 27 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7104 -1.2304
5 1 2.1355 -1.7854 -1.2290
6 6 2.3601 0.0122 -2.3581
7 7 2.7058 -0.6131 -3.4622
8 14 2.3133 1.8791 -2.3175
9 1 3.5988 2.3950 -1.7823
10 1 2.1054 2.3991 -3.6929
11 1 1.1983 2.3274 -1.4450
12 7 2.0196 -0.6925 1.1995
13 6 2.0825 0.2226 2.3469
14 1 1.2576 0.9329 2.2907
15 6 3.4111 0.9809 2.3223
16 6 1.9786 -0.5676 3.6259
17 8 1.8640 -1.7743 3.5855
18 7 2.0140 0.0666 4.8146
19 6 1.9136 -0.7016 6.0580
20 6 1.9780 0.2370 7.2351
21 6 3.2012 0.5474 7.8024
22 6 3.2678 1.4104 8.8765
23 6 2.0961 1.9620 9.3985
24 6 2.1591 2.8814 10.5530
25 8 1.1380 3.3594 11.0053
26 8 3.3489 3.1899 11.1043
27 6 0.8646 1.6401 8.8247
28 6 0.8130 0.7807 7.7468
29 1 -0.3633 0.4349 0.9312
30 1 -0.3634 0.5889 -0.8422
31 1 -0.3634 -1.0238 -0.0888
32 1 2.9367 -0.1048 -4.2555
33 1 1.4495 -1.4979 1.4101
34 1 3.4575 1.6603 3.1735
35 1 4.2359 0.2706 2.3785
36 1 3.4862 1.5525 1.3973
37 1 2.1061 1.0317 4.8469
38 1 0.9671 -1.2419 6.0758
39 1 2.7385 -1.4120 6.1138
40 1 4.1063 0.1161 7.4009
41 1 4.2237 1.6553 9.3156
42 1 3.3397 3.7961 11.8577
43 1 -0.0455 2.0629 9.2239
44 1 -0.1390 0.5306 7.3023
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001592221469.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:45:14
Heat of formation + Delta-G solvation = -102.035927 kcal
Electronic energy + Delta-G solvation = -25781.867868 eV
Core-core repulsion = 21891.953054 eV
Total energy + Delta-G solvation = -3889.914814 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.157 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-40.95533 -40.00619 -39.15352 -36.61579 -36.27736 -35.07410 -32.93247 -32.07138
-31.58874 -30.89018 -27.71090 -27.15025 -25.26613 -24.21674 -23.31616 -22.87491
-21.32383 -20.31020 -19.63238 -18.67437 -18.06356 -17.62048 -16.58898 -16.32510
-16.11986 -15.97238 -15.48382 -15.23248 -14.96014 -14.48754 -14.34163 -14.06777
-13.76063 -13.55059 -13.30474 -13.11399 -12.69178 -12.49751 -12.30655 -12.12853
-12.08444 -12.05584 -11.97548 -11.62473 -11.51291 -11.14489 -11.10890 -10.99708
-10.72334 -10.16468 -9.83080 -9.74226 -9.56689 -9.33489 -9.20613 -9.11071
-8.51583 -7.43417 -6.03751 -4.00747 0.05297 0.81023 1.96122 2.47162
2.75567 3.00863 3.27002 3.33589 3.35691 3.42370 4.10936 4.22525
4.40439 4.41794 4.53797 4.78122 4.84723 4.87339 4.91725 5.18535
5.21359 5.32935 5.43575 5.46591 5.47975 5.58805 5.65769 5.77005
5.92742 5.93435 5.99863 6.14375 6.21889 6.23386 6.28449 6.35226
6.54653 6.59381 6.75797 7.14687 7.35376 7.38316 7.70270 7.93569
8.26286 8.40484 8.68108 9.06107 9.58274 11.09966
Molecular weight = 320.16amu
Principal moments of inertia in cm(-1)
A = 0.023937 B = 0.002190 C = 0.002127
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1169.447409 B =12781.812196 C =13162.221654
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.172 4.172
2 C 0.180 3.820
3 H 0.038 0.962
4 C -0.488 4.488
5 H 0.077 0.923
6 C 0.069 3.931
7 N -0.900 5.900
8 Si 0.874 3.126
9 H -0.275 1.275
10 H -0.289 1.289
11 H -0.268 1.268
12 N -0.657 5.657
13 C 0.064 3.936
14 H 0.060 0.940
15 C -0.134 4.134
16 C 0.517 3.483
17 O -0.526 6.526
18 N -0.732 5.732
19 C 0.155 3.845
20 C -0.066 4.066
21 C -0.114 4.114
22 C -0.061 4.061
23 C -0.127 4.127
24 C 0.527 3.473
25 O -0.513 6.513
26 O -0.512 6.512
27 C -0.055 4.055
28 C -0.113 4.113
29 H 0.018 0.982
30 H 0.050 0.950
31 H 0.050 0.950
32 H 0.263 0.737
33 H 0.343 0.657
34 H 0.048 0.952
35 H 0.067 0.933
36 H 0.068 0.932
37 H 0.401 0.599
38 H 0.079 0.921
39 H 0.081 0.919
40 H 0.137 0.863
41 H 0.141 0.859
42 H 0.416 0.584
43 H 0.140 0.860
44 H 0.137 0.863
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.127 8.046 28.872 29.972
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.232 4.232
2 C 0.072 3.928
3 H 0.056 0.944
4 C -0.527 4.527
5 H 0.096 0.904
6 C -0.132 4.132
7 N -0.538 5.538
8 Si 0.702 3.298
9 H -0.201 1.201
10 H -0.216 1.216
11 H -0.193 1.193
12 N -0.291 5.291
13 C -0.050 4.050
14 H 0.078 0.922
15 C -0.192 4.192
16 C 0.304 3.696
17 O -0.400 6.400
18 N -0.387 5.387
19 C 0.032 3.968
20 C -0.066 4.066
21 C -0.133 4.133
22 C -0.079 4.079
23 C -0.128 4.128
24 C 0.372 3.628
25 O -0.403 6.403
26 O -0.324 6.324
27 C -0.073 4.073
28 C -0.131 4.131
29 H 0.037 0.963
30 H 0.069 0.931
31 H 0.070 0.930
32 H 0.073 0.927
33 H 0.164 0.836
34 H 0.067 0.933
35 H 0.086 0.914
36 H 0.087 0.913
37 H 0.236 0.764
38 H 0.097 0.903
39 H 0.099 0.901
40 H 0.155 0.845
41 H 0.159 0.841
42 H 0.275 0.725
43 H 0.158 0.842
44 H 0.155 0.845
Dipole moment (debyes) X Y Z Total
from point charges 0.488 7.091 28.254 29.135
hybrid contribution -0.917 2.072 0.708 2.374
sum -0.428 9.164 28.962 30.380
Atomic orbital electron populations
1.22673 1.01016 1.01009 0.98486 1.19744 0.89350 0.94696 0.89054
0.94433 1.20829 1.42515 0.95821 0.93530 0.90446 1.24984 0.94872
0.97956 0.95421 1.69889 1.46658 1.35579 1.01681 0.86925 0.78831
0.86926 0.77108 1.20108 1.21553 1.19344 1.60980 1.59021 1.08151
1.00962 1.21543 0.98949 0.95252 0.89223 0.92249 1.21747 0.96420
0.99398 1.01627 1.21086 0.74876 0.88611 0.85055 1.90689 1.47948
1.14388 1.87004 1.46056 1.76811 1.10936 1.04888 1.20239 1.03660
0.92394 0.80544 1.20286 0.93524 0.96564 0.96255 1.21185 0.97878
0.98089 0.96099 1.21491 0.97948 0.93913 0.94568 1.19098 0.95291
1.01441 0.96966 1.20924 0.80706 0.78961 0.82229 1.90906 1.35796
1.51657 1.61926 1.84554 1.34269 1.64143 1.49406 1.21292 0.96915
0.95004 0.94069 1.21129 0.98718 0.97038 0.96214 0.96347 0.93092
0.93048 0.92686 0.83570 0.93282 0.91403 0.91282 0.76443 0.90257
0.90108 0.84522 0.84122 0.72534 0.84218 0.84490
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -3.60 9.14 37.16 0.34 -3.26 16
2 C 0.18 4.15 2.05 -68.87 -0.14 4.01 16
3 H 0.04 0.87 4.27 -51.93 -0.22 0.65 16
4 C -0.49 -13.69 9.19 -34.44 -0.32 -14.01 16
5 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16
6 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16
7 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16
8 Si 0.87 21.10 26.99 -169.99 -4.59 16.51 16
9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16
10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16
11 H -0.27 -6.11 6.82 56.52 0.39 -5.73 16
12 N -0.66 -13.76 5.92 -102.17 -0.60 -14.37 16
13 C 0.06 1.04 2.82 -68.87 -0.19 0.85 16
14 H 0.06 0.91 7.10 -51.93 -0.37 0.54 16
15 C -0.13 -1.96 9.29 37.16 0.35 -1.62 16
16 C 0.52 7.71 7.18 -10.99 -0.08 7.63 16
17 O -0.53 -9.77 15.65 5.56 0.09 -9.68 16
18 N -0.73 -7.58 5.44 -61.48 -0.33 -7.92 16
19 C 0.15 1.37 5.79 -5.20 -0.03 1.34 16
20 C -0.07 -0.47 5.25 -104.53 -0.55 -1.01 16
21 C -0.11 -0.73 9.68 -39.64 -0.38 -1.11 16
22 C -0.06 -0.39 9.62 -39.17 -0.38 -0.77 16
23 C -0.13 -0.96 5.87 -104.98 -0.62 -1.58 16
24 C 0.53 4.25 8.27 34.61 0.29 4.53 16
25 O -0.51 -5.60 17.13 -19.24 -0.33 -5.93 16
26 O -0.51 -2.66 12.68 -40.54 -0.51 -3.18 16
27 C -0.05 -0.40 9.60 -39.17 -0.38 -0.78 16
28 C -0.11 -0.76 9.68 -39.64 -0.38 -1.15 16
29 H 0.02 0.32 7.38 -51.93 -0.38 -0.06 16
30 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16
31 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16
32 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16
33 H 0.34 7.37 7.20 -39.29 -0.28 7.09 16
34 H 0.05 0.52 7.56 -51.93 -0.39 0.13 16
35 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16
36 H 0.07 1.13 7.43 -51.93 -0.39 0.74 16
37 H 0.40 3.32 7.88 -40.82 -0.32 3.00 16
38 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16
39 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16
40 H 0.14 0.72 8.06 -52.49 -0.42 0.29 16
41 H 0.14 0.69 7.61 -52.48 -0.40 0.29 16
42 H 0.42 0.40 9.11 45.56 0.42 0.81 16
43 H 0.14 0.97 7.65 -52.49 -0.40 0.57 16
44 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16
LS Contribution 373.96 15.07 5.64 5.64
Total: -1.00 -35.18 373.96 -7.72 -42.89
By element:
Atomic # 1 Polarization: 13.01 SS G_CDS: -5.27 Total: 7.74 kcal
Atomic # 6 Polarization: -2.46 SS G_CDS: -2.57 Total: -5.03 kcal
Atomic # 7 Polarization: -48.80 SS G_CDS: -0.17 Total: -48.96 kcal
Atomic # 8 Polarization: -18.03 SS G_CDS: -0.76 Total: -18.79 kcal
Atomic # 14 Polarization: 21.10 SS G_CDS: -4.59 Total: 16.51 kcal
Total LS contribution 5.64 Total: 5.64 kcal
Total: -35.18 -7.72 -42.89 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001592221469.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -59.143 kcal
(2) G-P(sol) polarization free energy of solvation -35.177 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.319 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.716 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.893 kcal
(6) G-S(sol) free energy of system = (1) + (5) -102.036 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds