Wall clock time and date at job start Tue Mar 31 2020 13:45:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.09004 * 109.47213 * 2 1
4 4 C 1.50696 * 109.47192 * 239.99807 * 2 1 3
5 5 H 1.07992 * 120.00475 * 274.99701 * 4 2 1
6 6 C 1.37886 * 119.99641 * 94.99265 * 4 2 1
7 7 N 1.31512 * 119.99851 * 184.91483 * 6 4 2
8 8 Si 1.86799 * 120.00204 * 4.92075 * 6 4 2
9 9 H 1.48499 * 109.47154 * 84.82657 * 8 6 4
10 10 H 1.48500 * 109.47077 * 204.83071 * 8 6 4
11 11 H 1.48502 * 109.46764 * 324.82975 * 8 6 4
12 12 N 1.46902 * 109.47087 * 119.99872 * 2 1 3
13 13 C 1.46899 * 111.00218 * 274.99865 * 12 2 1
14 14 H 1.09001 * 109.46706 * 35.00018 * 13 12 2
15 15 C 1.52998 * 109.47160 * 275.00361 * 13 12 2
16 16 C 1.50700 * 109.47252 * 154.99891 * 13 12 2
17 17 O 1.21278 * 119.99702 * 0.02562 * 16 13 12
18 18 N 1.34772 * 119.99993 * 179.97438 * 16 13 12
19 19 C 1.46500 * 120.00092 * 180.02562 * 18 16 13
20 20 C 1.50696 * 109.47537 * 180.02562 * 19 18 16
21 21 C 1.38363 * 119.85109 * 269.73180 * 20 19 18
22 22 C 1.37946 * 120.15192 * 179.72323 * 21 20 19
23 23 C 1.39622 * 119.84761 * 0.55999 * 22 21 20
24 24 C 1.47728 * 120.15222 * 179.68411 * 23 22 21
25 25 O 1.21472 * 120.00415 * 180.02562 * 24 23 22
26 26 O 1.34717 * 119.99755 * 0.02562 * 24 23 22
27 27 C 1.39631 * 119.70079 * 359.71128 * 23 22 21
28 28 C 1.37948 * 119.84547 * 359.97438 * 27 23 22
29 29 H 1.09007 * 109.47020 * 295.03461 * 1 2 3
30 30 H 1.08998 * 109.47341 * 55.03670 * 1 2 3
31 31 H 1.09001 * 109.47290 * 175.04254 * 1 2 3
32 32 H 0.97000 * 120.00268 * 180.02562 * 7 6 4
33 33 H 1.00899 * 111.00012 * 38.95563 * 12 2 1
34 34 H 1.09006 * 109.47222 * 179.97438 * 15 13 12
35 35 H 1.08998 * 109.47283 * 299.99910 * 15 13 12
36 36 H 1.08997 * 109.47241 * 59.99846 * 15 13 12
37 37 H 0.97004 * 120.00197 * 0.02562 * 18 16 13
38 38 H 1.08999 * 109.46988 * 300.00278 * 19 18 16
39 39 H 1.09001 * 109.47332 * 60.00300 * 19 18 16
40 40 H 1.08002 * 119.92372 * 359.96915 * 21 20 19
41 41 H 1.08004 * 120.07618 * 180.27416 * 22 21 20
42 42 H 0.96699 * 116.99704 * 179.97438 * 26 24 23
43 43 H 1.07996 * 120.07558 * 179.97438 * 27 23 22
44 44 H 1.08002 * 119.91887 * 179.97438 * 28 27 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7104 -1.2304
5 1 2.1355 -1.7854 -1.2290
6 6 2.3601 0.0122 -2.3581
7 7 2.7058 -0.6131 -3.4622
8 14 2.3133 1.8791 -2.3175
9 1 3.5988 2.3950 -1.7823
10 1 2.1054 2.3991 -3.6929
11 1 1.1983 2.3274 -1.4450
12 7 2.0196 -0.6925 1.1995
13 6 2.0825 0.2226 2.3469
14 1 1.2576 0.9329 2.2907
15 6 3.4111 0.9809 2.3223
16 6 1.9786 -0.5676 3.6259
17 8 1.8640 -1.7743 3.5855
18 7 2.0140 0.0666 4.8146
19 6 1.9136 -0.7016 6.0580
20 6 1.9780 0.2370 7.2351
21 6 3.2012 0.5474 7.8024
22 6 3.2678 1.4104 8.8765
23 6 2.0961 1.9620 9.3985
24 6 2.1591 2.8814 10.5530
25 8 1.1380 3.3594 11.0053
26 8 3.3489 3.1899 11.1043
27 6 0.8646 1.6401 8.8247
28 6 0.8130 0.7807 7.7468
29 1 -0.3633 0.4349 0.9312
30 1 -0.3634 0.5889 -0.8422
31 1 -0.3634 -1.0238 -0.0888
32 1 2.9367 -0.1048 -4.2555
33 1 1.4495 -1.4979 1.4101
34 1 3.4575 1.6603 3.1735
35 1 4.2359 0.2706 2.3785
36 1 3.4862 1.5525 1.3973
37 1 2.1061 1.0317 4.8469
38 1 0.9671 -1.2419 6.0758
39 1 2.7385 -1.4120 6.1138
40 1 4.1063 0.1161 7.4009
41 1 4.2237 1.6553 9.3156
42 1 3.3397 3.7961 11.8577
43 1 -0.0455 2.0629 9.2239
44 1 -0.1390 0.5306 7.3023
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001592221469.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:45:13
Heat of formation + Delta-G solvation = -129.261742 kcal
Electronic energy + Delta-G solvation = -25783.048468 eV
Core-core repulsion = 21891.953054 eV
Total energy + Delta-G solvation = -3891.095414 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.157 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-41.53775 -41.03739 -39.84447 -37.82715 -37.14901 -36.03416 -34.72632 -33.23404
-32.25025 -32.07693 -29.10136 -28.03520 -27.24764 -25.12672 -24.02467 -23.64921
-21.88672 -21.81047 -21.03680 -19.37839 -19.19683 -18.55353 -18.06843 -17.42133
-16.76417 -16.70339 -16.52511 -16.25425 -15.99395 -15.68646 -15.39413 -15.11152
-14.70075 -14.51269 -14.46037 -14.12508 -14.00969 -13.77041 -13.64461 -13.57129
-13.26598 -12.88046 -12.82455 -12.69495 -12.62172 -12.58065 -12.40649 -12.11275
-11.94600 -11.75999 -11.73759 -11.17129 -10.88201 -10.65173 -10.16776 -10.04430
-10.03868 -9.03629 -8.22466 -6.25423 -0.50406 0.32173 1.37251 1.37314
1.39808 1.49416 1.60141 2.01996 2.17130 2.38865 2.76557 3.07719
3.50133 3.57408 3.72272 3.82291 3.93786 4.02089 4.18971 4.29239
4.29332 4.34203 4.48294 4.61034 4.64160 4.67741 4.76444 4.78694
4.81541 4.96708 5.00561 5.07627 5.15711 5.27104 5.33484 5.36955
5.44839 5.45030 5.53665 5.70428 5.75748 6.05344 6.45382 6.68514
6.74567 6.80332 6.91100 7.21223 7.38214 8.95385
Molecular weight = 320.16amu
Principal moments of inertia in cm(-1)
A = 0.023937 B = 0.002190 C = 0.002127
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1169.447409 B =12781.812196 C =13162.221654
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C 0.185 3.815
3 H 0.047 0.953
4 C -0.496 4.496
5 H 0.024 0.976
6 C 0.005 3.995
7 N -0.954 5.954
8 Si 0.946 3.054
9 H -0.264 1.264
10 H -0.290 1.290
11 H -0.239 1.239
12 N -0.678 5.678
13 C 0.060 3.940
14 H 0.080 0.920
15 C -0.131 4.131
16 C 0.522 3.478
17 O -0.570 6.570
18 N -0.710 5.710
19 C 0.157 3.843
20 C -0.066 4.066
21 C -0.111 4.111
22 C -0.056 4.056
23 C -0.139 4.139
24 C 0.531 3.469
25 O -0.550 6.550
26 O -0.504 6.504
27 C -0.063 4.063
28 C -0.110 4.110
29 H 0.053 0.947
30 H 0.047 0.953
31 H 0.040 0.960
32 H 0.264 0.736
33 H 0.337 0.663
34 H 0.095 0.905
35 H 0.052 0.948
36 H 0.053 0.947
37 H 0.415 0.585
38 H 0.077 0.923
39 H 0.078 0.922
40 H 0.151 0.849
41 H 0.157 0.843
42 H 0.434 0.566
43 H 0.138 0.862
44 H 0.148 0.852
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.236 10.804 31.297 33.110
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.226 4.226
2 C 0.077 3.923
3 H 0.065 0.935
4 C -0.535 4.535
5 H 0.042 0.958
6 C -0.191 4.191
7 N -0.595 5.595
8 Si 0.769 3.231
9 H -0.189 1.189
10 H -0.217 1.217
11 H -0.163 1.163
12 N -0.311 5.311
13 C -0.053 4.053
14 H 0.098 0.902
15 C -0.189 4.189
16 C 0.308 3.692
17 O -0.448 6.448
18 N -0.363 5.363
19 C 0.034 3.966
20 C -0.066 4.066
21 C -0.130 4.130
22 C -0.074 4.074
23 C -0.140 4.140
24 C 0.377 3.623
25 O -0.442 6.442
26 O -0.318 6.318
27 C -0.081 4.081
28 C -0.129 4.129
29 H 0.072 0.928
30 H 0.066 0.934
31 H 0.059 0.941
32 H 0.073 0.927
33 H 0.157 0.843
34 H 0.114 0.886
35 H 0.071 0.929
36 H 0.072 0.928
37 H 0.252 0.748
38 H 0.095 0.905
39 H 0.097 0.903
40 H 0.169 0.831
41 H 0.175 0.825
42 H 0.296 0.704
43 H 0.156 0.844
44 H 0.165 0.835
Dipole moment (debyes) X Y Z Total
from point charges 0.617 9.893 30.755 32.313
hybrid contribution -0.892 1.123 0.075 1.436
sum -0.275 11.016 30.830 32.740
Atomic orbital electron populations
1.22529 0.99150 1.00744 1.00178 1.19539 0.90565 0.94291 0.87939
0.93496 1.21106 1.42407 0.93787 0.96213 0.95789 1.25954 0.94488
1.04025 0.94679 1.70073 1.48680 1.38002 1.02703 0.85779 0.80224
0.79511 0.77591 1.18855 1.21657 1.16262 1.60723 1.59059 1.08989
1.02339 1.21655 1.00595 0.94822 0.88277 0.90199 1.21762 0.94816
0.99441 1.02901 1.20792 0.74758 0.87799 0.85823 1.90684 1.50389
1.16128 1.87580 1.45827 1.74699 1.11663 1.04121 1.20267 1.03502
0.92594 0.80199 1.20111 0.94036 0.96612 0.95863 1.21351 0.98107
0.97668 0.95836 1.21639 0.98167 0.93347 0.94267 1.19252 0.95889
1.01734 0.97114 1.21032 0.80749 0.78422 0.82066 1.90893 1.37062
1.53157 1.63105 1.84514 1.32735 1.64402 1.50103 1.21356 0.97023
0.95327 0.94364 1.21221 0.99155 0.96560 0.95918 0.92776 0.93437
0.94118 0.92670 0.84348 0.88630 0.92904 0.92814 0.74772 0.90503
0.90336 0.83127 0.82547 0.70396 0.84377 0.83470
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -6.68 9.14 71.98 0.66 -6.02 16
2 C 0.19 8.41 2.05 44.17 0.09 8.50 16
3 H 0.05 2.04 4.27 -2.38 -0.01 2.03 16
4 C -0.50 -28.68 9.19 25.60 0.24 -28.45 16
5 H 0.02 1.58 8.06 -2.91 -0.02 1.56 16
6 C 0.00 0.28 5.47 84.66 0.46 0.75 16
7 N -0.95 -60.32 13.96 21.45 0.30 -60.02 16
8 Si 0.95 42.97 26.99 68.60 1.85 44.82 16
9 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16
10 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16
11 H -0.24 -9.68 6.82 99.48 0.68 -9.00 16
12 N -0.68 -28.13 5.92 -477.17 -2.82 -30.95 16
13 C 0.06 1.80 2.82 44.17 0.12 1.92 16
14 H 0.08 2.12 7.10 -2.39 -0.02 2.10 16
15 C -0.13 -3.46 9.29 71.98 0.67 -2.79 16
16 C 0.52 14.51 7.18 87.66 0.63 15.14 16
17 O -0.57 -20.85 15.65 -3.02 -0.05 -20.90 16
18 N -0.71 -12.52 5.44 -466.80 -2.54 -15.06 16
19 C 0.16 2.39 5.79 85.63 0.50 2.89 16
20 C -0.07 -0.75 5.25 -19.81 -0.10 -0.85 16
21 C -0.11 -1.08 9.68 22.23 0.22 -0.86 16
22 C -0.06 -0.56 9.62 22.53 0.22 -0.34 16
23 C -0.14 -1.82 5.87 -20.10 -0.12 -1.94 16
24 C 0.53 7.73 8.27 70.33 0.58 8.31 16
25 O -0.55 -11.57 17.13 19.93 0.34 -11.23 16
26 O -0.50 -4.10 12.68 -56.27 -0.71 -4.82 16
27 C -0.06 -0.81 9.60 22.54 0.22 -0.59 16
28 C -0.11 -1.23 9.68 22.23 0.22 -1.02 16
29 H 0.05 1.77 7.38 -2.38 -0.02 1.75 16
30 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16
31 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16
32 H 0.26 15.62 8.31 -92.71 -0.77 14.84 16
33 H 0.34 14.65 7.20 -89.69 -0.65 14.00 16
34 H 0.10 1.59 7.56 -2.38 -0.02 1.57 16
35 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16
36 H 0.05 1.60 7.43 -2.39 -0.02 1.58 16
37 H 0.42 5.12 7.88 -92.71 -0.73 4.39 16
38 H 0.08 1.27 8.08 -2.39 -0.02 1.25 16
39 H 0.08 1.29 8.08 -2.39 -0.02 1.28 16
40 H 0.15 1.05 8.06 -2.91 -0.02 1.02 16
41 H 0.16 1.02 7.61 -2.91 -0.02 1.00 16
42 H 0.43 -0.11 9.11 -74.06 -0.67 -0.79 16
43 H 0.14 1.79 7.65 -2.91 -0.02 1.77 16
44 H 0.15 1.30 8.06 -2.91 -0.02 1.27 16
Total: -1.00 -79.90 373.96 -0.06 -79.97
By element:
Atomic # 1 Polarization: 24.56 SS G_CDS: -1.02 Total: 23.54 kcal
Atomic # 6 Polarization: -9.94 SS G_CDS: 4.59 Total: -5.35 kcal
Atomic # 7 Polarization: -100.96 SS G_CDS: -5.06 Total: -106.03 kcal
Atomic # 8 Polarization: -36.52 SS G_CDS: -0.42 Total: -36.94 kcal
Atomic # 14 Polarization: 42.97 SS G_CDS: 1.85 Total: 44.82 kcal
Total: -79.90 -0.06 -79.97 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001592221469.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -49.296 kcal
(2) G-P(sol) polarization free energy of solvation -79.902 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.198 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.064 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.965 kcal
(6) G-S(sol) free energy of system = (1) + (5) -129.262 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds