Wall clock time and date at job start Tue Mar 31 2020 13:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47546 * 2 1 4 4 C 1.50703 * 109.47065 * 240.00318 * 2 1 3 5 5 H 1.07998 * 120.00072 * 240.00043 * 4 2 1 6 6 C 1.37882 * 120.00133 * 59.99625 * 4 2 1 7 7 N 1.31506 * 119.99837 * 179.72361 * 6 4 2 8 8 Si 1.86804 * 119.99720 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.47121 * 269.72257 * 8 6 4 10 10 H 1.48497 * 109.47129 * 29.72139 * 8 6 4 11 11 H 1.48498 * 109.47051 * 149.71854 * 8 6 4 12 12 N 1.46496 * 109.47345 * 120.00375 * 2 1 3 13 13 C 1.34778 * 120.00110 * 275.00118 * 12 2 1 14 14 O 1.21590 * 119.99880 * 359.97438 * 13 12 2 15 15 N 1.34775 * 120.00280 * 179.97438 * 13 12 2 16 16 C 1.39943 * 120.00047 * 174.68449 * 15 13 12 17 17 C 1.38869 * 120.06806 * 326.56612 * 16 15 13 18 18 C 1.38118 * 119.92220 * 179.77080 * 17 16 15 19 19 C 1.38275 * 120.07341 * 0.50674 * 18 17 16 20 20 C 1.50702 * 119.92939 * 179.72909 * 19 18 17 21 21 C 1.53001 * 109.47297 * 0.02562 * 20 19 18 22 22 C 1.52998 * 109.47303 * 120.02461 * 20 19 18 23 23 C 1.50707 * 109.46620 * 240.02038 * 20 19 18 24 24 O 1.20820 * 120.00345 * 0.02562 * 23 20 19 25 25 O 1.34230 * 119.99560 * 179.97438 * 23 20 19 26 26 C 1.38284 * 120.14033 * 359.74755 * 19 18 17 27 27 C 1.38113 * 120.06793 * 359.97438 * 26 19 18 28 28 H 1.09001 * 109.47456 * 59.99621 * 1 2 3 29 29 H 1.08997 * 109.47546 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46788 * 299.99686 * 1 2 3 31 31 H 0.97009 * 119.99967 * 180.27317 * 7 6 4 32 32 H 0.97007 * 120.00096 * 94.99445 * 12 2 1 33 33 H 0.96999 * 119.99475 * 354.69010 * 15 13 12 34 34 H 1.07991 * 120.03528 * 359.97438 * 17 16 15 35 35 H 1.08001 * 119.96057 * 180.25803 * 18 17 16 36 36 H 1.09003 * 109.46576 * 60.00075 * 21 20 19 37 37 H 1.08996 * 109.46995 * 180.02562 * 21 20 19 38 38 H 1.09003 * 109.46978 * 300.00713 * 21 20 19 39 39 H 1.08997 * 109.47532 * 59.99780 * 22 20 19 40 40 H 1.09003 * 109.46666 * 179.97438 * 22 20 19 41 41 H 1.08999 * 109.46928 * 299.99159 * 22 20 19 42 42 H 0.96698 * 116.99699 * 180.02562 * 25 23 20 43 43 H 1.08005 * 119.96039 * 179.97438 * 26 19 18 44 44 H 1.08003 * 120.03288 * 179.97438 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 2.1420 -0.8560 -3.5566 8 14 0.6257 1.2799 -2.6541 9 1 -0.8018 0.8740 -2.7059 10 1 0.8440 2.1742 -1.4888 11 1 0.9816 1.9992 -3.9035 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8583 1.1614 2.4117 15 7 2.5959 -0.6539 3.4576 16 6 2.8354 0.0668 4.6330 17 6 3.2923 1.3765 4.5653 18 6 3.5232 2.0866 5.7272 19 6 3.3099 1.4914 6.9570 20 6 3.5688 2.2673 8.2228 21 6 4.0551 3.6740 7.8684 22 6 2.2758 2.3643 9.0349 23 6 4.6221 1.5618 9.0377 24 8 5.1126 0.5349 8.6321 25 8 5.0161 2.0751 10.2138 26 6 2.8600 0.1858 7.0278 27 6 2.6217 -0.5278 5.8696 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.9109 -0.5223 -4.4376 32 1 2.2490 -1.6319 1.1525 33 1 2.7529 -1.6108 3.4349 34 1 3.4638 1.8401 3.6052 35 1 3.8746 3.1065 5.6752 36 1 3.2932 4.1840 7.2789 37 1 4.2427 4.2349 8.7839 38 1 4.9763 3.6048 7.2897 39 1 1.9292 1.3622 9.2874 40 1 2.4632 2.9251 9.9507 41 1 1.5140 2.8745 8.4455 42 1 5.6945 1.5873 10.7004 43 1 2.6948 -0.2764 7.9899 44 1 2.2707 -1.5477 5.9255 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592222595.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:55 Heat of formation + Delta-G solvation = -90.373959 kcal Electronic energy + Delta-G solvation = -26568.200466 eV Core-core repulsion = 22678.791353 eV Total energy + Delta-G solvation = -3889.409113 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.12786 -40.17154 -38.72480 -36.48061 -36.11505 -34.96526 -33.81085 -32.37125 -31.05459 -30.07977 -28.23851 -27.76606 -25.20762 -24.83917 -23.26002 -22.51825 -21.35277 -19.99644 -19.95371 -18.37333 -18.13853 -17.60615 -16.88286 -16.33005 -15.97001 -15.68065 -15.27570 -15.03413 -14.63933 -14.20352 -14.13449 -14.06636 -13.45873 -13.36173 -13.06605 -13.01154 -12.80244 -12.65128 -12.39713 -12.27149 -12.19820 -11.87439 -11.87066 -11.73565 -11.35742 -11.23837 -10.96139 -10.81317 -10.58189 -10.21992 -10.06625 -9.80362 -9.47339 -9.24712 -8.81802 -8.78362 -8.28632 -7.81016 -6.22531 -4.25320 1.28535 1.51705 1.94346 2.75069 3.06133 3.22880 3.35017 3.39768 3.55101 3.98578 4.18352 4.30387 4.44447 4.60698 4.72661 4.92757 4.99871 5.03036 5.12440 5.24991 5.34905 5.38229 5.43464 5.49131 5.63823 5.70837 5.78977 5.82791 6.05519 6.18693 6.28582 6.31471 6.34989 6.44413 6.54866 6.58342 6.67910 6.80798 7.04141 7.17308 7.27231 7.45202 7.51536 7.61661 8.24862 8.58135 8.76086 9.05001 9.38188 10.89569 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.031074 B = 0.002433 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.847223 B =11506.828814 C =11792.329872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.254 3.746 3 H 0.050 0.950 4 C -0.535 4.535 5 H 0.080 0.920 6 C 0.078 3.922 7 N -0.892 5.892 8 Si 0.886 3.114 9 H -0.276 1.276 10 H -0.261 1.261 11 H -0.294 1.294 12 N -0.711 5.711 13 C 0.695 3.305 14 O -0.583 6.583 15 N -0.695 5.695 16 C 0.189 3.811 17 C -0.123 4.123 18 C -0.088 4.088 19 C -0.110 4.110 20 C -0.003 4.003 21 C -0.145 4.145 22 C -0.139 4.139 23 C 0.484 3.516 24 O -0.501 6.501 25 O -0.516 6.516 26 C -0.067 4.067 27 C -0.156 4.156 28 H 0.047 0.953 29 H 0.052 0.948 30 H 0.036 0.964 31 H 0.268 0.732 32 H 0.393 0.607 33 H 0.404 0.596 34 H 0.140 0.860 35 H 0.128 0.872 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.408 0.592 43 H 0.117 0.883 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.703 4.613 27.045 27.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.150 3.850 3 H 0.068 0.932 4 C -0.573 4.573 5 H 0.098 0.902 6 C -0.125 4.125 7 N -0.529 5.529 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.186 1.186 11 H -0.221 1.221 12 N -0.363 5.363 13 C 0.395 3.605 14 O -0.461 6.461 15 N -0.342 5.342 16 C 0.093 3.907 17 C -0.144 4.144 18 C -0.106 4.106 19 C -0.111 4.111 20 C -0.004 4.004 21 C -0.202 4.202 22 C -0.196 4.196 23 C 0.325 3.675 24 O -0.387 6.387 25 O -0.328 6.328 26 C -0.086 4.086 27 C -0.177 4.177 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.226 0.774 33 H 0.240 0.760 34 H 0.158 0.842 35 H 0.146 0.854 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.266 0.734 43 H 0.135 0.865 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.259 5.596 26.388 27.069 hybrid contribution 0.049 -0.740 -0.033 0.742 sum 2.308 4.856 26.355 26.897 Atomic orbital electron populations 1.22479 0.99391 1.00849 0.99361 1.19028 0.89956 0.94424 0.81609 0.93247 1.21023 1.33311 1.14548 0.88465 0.90188 1.24821 0.95509 0.96730 0.95472 1.69864 1.44789 1.40164 0.98059 0.86870 0.80495 0.83586 0.77512 1.20299 1.18563 1.22141 1.45481 1.68648 1.13708 1.08429 1.16113 0.78486 0.85478 0.80399 1.90886 1.56694 1.14273 1.84207 1.42839 1.69885 1.11526 1.09965 1.17581 0.95701 0.92493 0.84937 1.21229 0.99544 0.94000 0.99579 1.20949 0.98864 0.99877 0.90952 1.19104 1.04738 0.94769 0.92465 1.19243 0.93271 0.95761 0.92138 1.21975 1.02333 0.93084 1.02848 1.21907 0.94825 1.03065 0.99804 1.23441 0.81795 0.83086 0.79148 1.90750 1.54219 1.23930 1.69849 1.84526 1.57789 1.56738 1.33741 1.20532 0.97361 0.93198 0.97471 1.20764 1.05157 1.00951 0.90875 0.93408 0.92855 0.94457 0.92242 0.77366 0.76046 0.84202 0.85409 0.90231 0.90980 0.91561 0.91915 0.91042 0.90475 0.73367 0.86493 0.85818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.63 8.96 37.16 0.33 -3.30 16 2 C 0.25 6.01 2.15 -69.09 -0.15 5.86 16 3 H 0.05 1.29 6.63 -51.93 -0.34 0.95 16 4 C -0.54 -14.36 9.31 -34.44 -0.32 -14.68 16 5 H 0.08 2.25 7.98 -52.49 -0.42 1.83 16 6 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 7 N -0.89 -26.30 13.96 55.43 0.77 -25.52 16 8 Si 0.89 21.66 24.37 -169.99 -4.14 17.51 16 9 H -0.28 -6.54 6.88 56.52 0.39 -6.15 16 10 H -0.26 -6.34 6.52 56.52 0.37 -5.97 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 N -0.71 -14.01 5.07 -59.82 -0.30 -14.32 16 13 C 0.69 13.33 8.27 -86.92 -0.72 12.61 16 14 O -0.58 -13.13 13.70 5.29 0.07 -13.06 16 15 N -0.69 -10.37 5.35 -14.22 -0.08 -10.45 16 16 C 0.19 2.81 6.28 -83.69 -0.53 2.29 16 17 C -0.12 -1.90 8.65 -39.39 -0.34 -2.24 16 18 C -0.09 -1.12 8.97 -39.61 -0.36 -1.47 16 19 C -0.11 -1.27 4.38 -104.59 -0.46 -1.73 16 20 C 0.00 -0.03 0.80 -156.81 -0.12 -0.15 16 21 C -0.15 -1.06 7.06 37.16 0.26 -0.80 16 22 C -0.14 -0.99 8.22 37.16 0.31 -0.68 16 23 C 0.48 4.67 6.79 36.01 0.24 4.91 16 24 O -0.50 -6.49 15.86 -18.75 -0.30 -6.79 16 25 O -0.52 -3.42 13.23 -39.26 -0.52 -3.94 16 26 C -0.07 -0.80 7.92 -39.61 -0.31 -1.11 16 27 C -0.16 -1.96 9.96 -39.40 -0.39 -2.36 16 28 H 0.05 1.10 3.28 -51.93 -0.17 0.93 16 29 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.39 6.71 8.56 -40.82 -0.35 6.36 16 33 H 0.40 4.67 8.83 -40.82 -0.36 4.31 16 34 H 0.14 2.46 6.42 -52.49 -0.34 2.12 16 35 H 0.13 1.34 5.88 -52.49 -0.31 1.03 16 36 H 0.08 0.53 7.51 -51.93 -0.39 0.14 16 37 H 0.07 0.43 8.11 -51.93 -0.42 0.01 16 38 H 0.07 0.51 7.51 -51.93 -0.39 0.12 16 39 H 0.06 0.44 7.38 -51.93 -0.38 0.06 16 40 H 0.07 0.42 8.11 -51.93 -0.42 -0.01 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.41 1.11 9.10 45.56 0.41 1.52 16 43 H 0.12 1.22 7.51 -52.48 -0.39 0.82 16 44 H 0.12 1.28 8.06 -52.48 -0.42 0.85 16 LS Contribution 358.83 15.07 5.41 5.41 Total: -1.00 -34.61 358.83 -6.88 -41.49 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -5.15 Total: 10.42 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -2.65 Total: -0.76 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: 0.39 Total: -50.29 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.74 Total: -23.79 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.14 Total: 17.51 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.61 -6.88 -41.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592222595.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.881 kcal (2) G-P(sol) polarization free energy of solvation -34.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds