Wall clock time and date at job start Tue Mar 31 2020 13:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46958 * 2 1 4 4 C 1.53004 * 109.46980 * 119.99896 * 2 1 3 5 5 C 1.50704 * 109.46776 * 185.00502 * 4 2 1 6 6 O 1.21287 * 120.00497 * 359.97438 * 5 4 2 7 7 N 1.34780 * 119.99813 * 180.02562 * 5 4 2 8 8 C 1.39948 * 120.00137 * 175.38105 * 7 5 4 9 9 C 1.38996 * 119.99812 * 214.82760 * 8 7 5 10 10 C 1.38227 * 120.23378 * 179.72194 * 9 8 7 11 11 C 1.38003 * 120.22633 * 0.55566 * 10 9 8 12 12 C 1.39630 * 119.99204 * 359.71812 * 11 10 9 13 13 C 1.47741 * 120.11456 * 180.02562 * 12 11 10 14 14 O 1.21476 * 119.99548 * 179.97438 * 13 12 11 15 15 O 1.34709 * 120.00540 * 359.97438 * 13 12 11 16 16 C 1.38582 * 119.99927 * 35.10039 * 8 7 5 17 17 N 1.46901 * 109.47554 * 240.00010 * 2 1 3 18 18 C 1.46897 * 110.99984 * 84.99796 * 17 2 1 19 19 C 1.53003 * 109.47148 * 180.02562 * 18 17 2 20 20 C 1.50701 * 109.46964 * 180.02562 * 19 18 17 21 21 H 1.08003 * 120.00313 * 359.97438 * 20 19 18 22 22 C 1.37878 * 119.99560 * 180.02562 * 20 19 18 23 23 N 1.31516 * 119.99629 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 120.00409 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.46704 * 90.00580 * 24 22 20 26 26 H 1.48493 * 109.47196 * 210.00636 * 24 22 20 27 27 H 1.48507 * 109.46844 * 330.00854 * 24 22 20 28 28 H 1.08999 * 109.47171 * 300.00023 * 1 2 3 29 29 H 1.08998 * 109.46849 * 60.00092 * 1 2 3 30 30 H 1.09004 * 109.46958 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47082 * 65.00221 * 4 2 1 32 32 H 1.08999 * 109.47160 * 304.99586 * 4 2 1 33 33 H 0.97003 * 119.99688 * 355.38114 * 7 5 4 34 34 H 1.08004 * 119.88578 * 359.97438 * 9 8 7 35 35 H 1.08004 * 119.88619 * 180.27452 * 10 9 8 36 36 H 1.08001 * 120.00436 * 179.70151 * 11 10 9 37 37 H 0.96693 * 117.00319 * 179.97438 * 15 13 12 38 38 H 1.08004 * 120.11189 * 359.97438 * 16 8 7 39 39 H 1.00896 * 111.00007 * 208.95042 * 17 2 1 40 40 H 1.09002 * 109.47132 * 300.00725 * 18 17 2 41 41 H 1.08999 * 109.47001 * 59.99907 * 18 17 2 42 42 H 1.08999 * 109.47108 * 300.00016 * 19 18 17 43 43 H 1.08999 * 109.46772 * 60.00386 * 19 18 17 44 44 H 0.97003 * 119.99980 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 8 4.1451 -0.0209 0.4441 7 7 4.2150 -1.1804 2.3344 8 6 5.6143 -1.1655 2.3438 9 6 6.3171 -2.2420 2.8723 10 6 7.6994 -2.2351 2.8789 11 6 8.3911 -1.1542 2.3712 12 6 7.6946 -0.0652 1.8433 13 6 8.4324 1.0931 1.2986 14 8 7.8242 2.0391 0.8394 15 8 9.7794 1.1003 1.3112 16 6 6.2992 -0.0751 1.8315 17 7 2.0198 -0.6925 -1.1994 18 6 2.0825 0.2226 -2.3468 19 6 2.5952 -0.5332 -3.5744 20 6 2.6602 0.4058 -4.7514 21 1 2.3650 1.4382 -4.6356 22 6 3.0956 -0.0535 -5.9763 23 7 3.1528 0.7660 -7.0034 24 14 3.6056 -1.8393 -6.1769 25 1 2.4254 -2.6497 -6.5713 26 1 4.6495 -1.9409 -7.2281 27 1 4.1473 -2.3468 -4.8906 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7516 -1.7715 1.2056 32 1 1.6054 -0.2617 2.1370 33 1 3.7294 -1.5977 3.0631 34 1 5.7814 -3.0888 3.2754 35 1 8.2398 -3.0764 3.2868 36 1 9.4710 -1.1504 2.3826 37 1 10.2177 1.8798 0.9435 38 1 5.7548 0.7640 1.4241 39 1 2.9174 -1.1204 -1.0287 40 1 1.0871 0.6163 -2.5525 41 1 2.7589 1.0462 -2.1181 42 1 3.5906 -0.9272 -3.3690 43 1 1.9185 -1.3565 -3.8029 44 1 3.4595 0.4430 -7.8651 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609727077.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:41 Heat of formation + Delta-G solvation = -104.254798 kcal Electronic energy + Delta-G solvation = -26397.547513 eV Core-core repulsion = 22507.536482 eV Total energy + Delta-G solvation = -3890.011031 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.07372 -40.24229 -38.71925 -36.65476 -36.26642 -35.03603 -33.42531 -31.76567 -31.61058 -30.37567 -28.48966 -27.81412 -25.14793 -24.04869 -23.16946 -21.60023 -21.09671 -20.30396 -19.95835 -18.58314 -17.98112 -17.28847 -16.71332 -16.57750 -16.07678 -15.91671 -15.77666 -15.31034 -14.93402 -14.67798 -14.20262 -13.98465 -13.81777 -13.58662 -13.23933 -13.10579 -12.57864 -12.48139 -12.30251 -12.09796 -11.98068 -11.92005 -11.75434 -11.60882 -11.19781 -11.11559 -10.87314 -10.72996 -10.68385 -10.01359 -9.95390 -9.66832 -9.58130 -9.38281 -9.10026 -8.55798 -8.43045 -7.80024 -5.94035 -3.90992 0.36194 0.96121 2.18810 2.45400 2.57780 2.88031 3.39926 3.45924 3.47308 3.53120 4.38289 4.49653 4.55922 4.56247 4.62147 4.73540 4.82399 4.85157 5.06361 5.20380 5.25839 5.33755 5.40885 5.51543 5.62798 5.71588 5.86991 5.92512 5.93180 5.98898 6.06740 6.18789 6.26490 6.36188 6.39017 6.56013 6.57696 6.96710 7.01040 7.27129 7.54770 7.68959 7.73753 7.82173 7.92103 8.06829 8.65487 9.10999 9.69012 11.19620 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009481 B = 0.003569 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2952.714381 B = 7844.535942 C = 9491.174383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.093 3.907 3 H 0.050 0.950 4 C -0.140 4.140 5 C 0.506 3.494 6 O -0.501 6.501 7 N -0.678 5.678 8 C 0.137 3.863 9 C -0.110 4.110 10 C -0.115 4.115 11 C -0.079 4.079 12 C -0.109 4.109 13 C 0.524 3.476 14 O -0.501 6.501 15 O -0.514 6.514 16 C -0.058 4.058 17 N -0.686 5.686 18 C 0.077 3.923 19 C -0.009 4.009 20 C -0.516 4.516 21 H 0.071 0.929 22 C 0.066 3.934 23 N -0.906 5.906 24 Si 0.882 3.118 25 H -0.277 1.277 26 H -0.289 1.289 27 H -0.266 1.266 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.413 0.587 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.415 0.585 38 H 0.156 0.844 39 H 0.337 0.663 40 H 0.061 0.939 41 H 0.025 0.975 42 H 0.012 0.988 43 H 0.018 0.982 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.930 -7.160 28.668 30.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.018 4.018 3 H 0.068 0.932 4 C -0.180 4.180 5 C 0.294 3.706 6 O -0.374 6.374 7 N -0.324 5.324 8 C 0.043 3.957 9 C -0.131 4.131 10 C -0.134 4.134 11 C -0.098 4.098 12 C -0.110 4.110 13 C 0.367 3.633 14 O -0.389 6.389 15 O -0.326 6.326 16 C -0.078 4.078 17 N -0.319 5.319 18 C -0.051 4.051 19 C -0.047 4.047 20 C -0.555 4.555 21 H 0.089 0.911 22 C -0.135 4.135 23 N -0.546 5.546 24 Si 0.709 3.291 25 H -0.203 1.203 26 H -0.216 1.216 27 H -0.190 1.190 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.249 0.751 34 H 0.151 0.849 35 H 0.154 0.846 36 H 0.157 0.843 37 H 0.274 0.726 38 H 0.174 0.826 39 H 0.156 0.844 40 H 0.079 0.921 41 H 0.044 0.956 42 H 0.030 0.970 43 H 0.036 0.964 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.346 -7.031 27.673 29.249 hybrid contribution 1.167 -0.099 0.057 1.172 sum 7.513 -7.130 27.730 29.601 Atomic orbital electron populations 1.21782 0.94237 1.02202 1.01386 1.21273 0.95563 0.96478 0.88447 0.93196 1.21980 0.89907 1.04693 1.01463 1.21255 0.90998 0.77804 0.80521 1.90835 1.69779 1.39142 1.37626 1.43600 1.04148 1.59524 1.25135 1.17551 0.83262 0.93974 1.00932 1.21205 0.94721 0.96433 1.00735 1.20943 0.93386 0.98654 1.00381 1.21446 1.00776 0.92179 0.95393 1.18894 0.92816 0.94252 1.05065 1.20833 0.80429 0.86358 0.75656 1.90959 1.69276 1.36110 1.42517 1.84514 1.21050 1.49373 1.77690 1.21451 0.92338 0.98015 0.95991 1.60847 1.33357 1.33785 1.03939 1.21915 0.99768 0.93631 0.89786 1.19524 0.95682 0.96431 0.93017 1.21099 1.43804 0.97732 0.92832 0.91135 1.24998 0.95110 0.97554 0.95807 1.69925 1.48177 1.35275 1.01174 0.86739 0.78549 0.85837 0.77937 1.20287 1.21557 1.19045 0.93111 0.91923 0.92093 0.87575 0.88107 0.75127 0.84896 0.84626 0.84299 0.72570 0.82616 0.84366 0.92074 0.95636 0.96984 0.96351 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.41 37.16 0.35 -1.33 16 2 C 0.09 1.31 2.21 -67.71 -0.15 1.16 16 3 H 0.05 0.80 7.61 -51.93 -0.40 0.41 16 4 C -0.14 -1.35 5.30 -27.88 -0.15 -1.50 16 5 C 0.51 6.05 7.14 -10.98 -0.08 5.97 16 6 O -0.50 -8.59 12.01 5.55 0.07 -8.53 16 7 N -0.68 -5.83 5.34 -9.89 -0.05 -5.88 16 8 C 0.14 1.41 6.29 -83.74 -0.53 0.88 16 9 C -0.11 -0.83 9.96 -39.30 -0.39 -1.22 16 10 C -0.12 -0.83 10.02 -39.67 -0.40 -1.22 16 11 C -0.08 -0.70 9.61 -39.15 -0.38 -1.08 16 12 C -0.11 -1.30 5.87 -105.01 -0.62 -1.92 16 13 C 0.52 6.73 8.27 34.61 0.29 7.02 16 14 O -0.50 -8.41 17.13 -19.25 -0.33 -8.74 16 15 O -0.51 -4.59 12.68 -40.52 -0.51 -5.10 16 16 C -0.06 -0.76 8.24 -38.97 -0.32 -1.08 16 17 N -0.69 -12.51 6.18 -106.72 -0.66 -13.17 16 18 C 0.08 1.73 5.42 -3.82 -0.02 1.71 16 19 C -0.01 -0.23 4.30 -27.88 -0.12 -0.35 16 20 C -0.52 -15.80 9.66 -34.44 -0.33 -16.13 16 21 H 0.07 2.30 7.99 -52.48 -0.42 1.88 16 22 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 23 N -0.91 -29.34 13.96 55.43 0.77 -28.56 16 24 Si 0.88 23.18 27.47 -169.99 -4.67 18.51 16 25 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 27 H -0.27 -6.84 6.54 56.52 0.37 -6.47 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.87 7.45 -51.93 -0.39 0.49 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.41 1.83 8.82 -40.82 -0.36 1.47 16 34 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 35 H 0.14 0.58 8.06 -52.48 -0.42 0.16 16 36 H 0.14 0.98 7.60 -52.49 -0.40 0.58 16 37 H 0.42 1.98 9.11 45.56 0.42 2.39 16 38 H 0.16 2.52 5.81 -52.48 -0.31 2.21 16 39 H 0.34 6.38 6.50 -39.29 -0.26 6.12 16 40 H 0.06 1.35 7.44 -51.93 -0.39 0.97 16 41 H 0.03 0.61 8.05 -51.93 -0.42 0.19 16 42 H 0.01 0.32 7.20 -51.93 -0.37 -0.05 16 43 H 0.02 0.48 7.57 -51.93 -0.39 0.08 16 44 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 LS Contribution 370.87 15.07 5.59 5.59 Total: -1.00 -39.46 370.87 -8.12 -47.58 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -5.38 Total: 5.43 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -2.94 Total: -7.14 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: 0.06 Total: -47.61 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.78 Total: -22.37 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -4.67 Total: 18.51 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -39.46 -8.12 -47.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609727077.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.678 kcal (2) G-P(sol) polarization free energy of solvation -39.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds