Wall clock time and date at job start Tue Mar 31 2020 13:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46958 * 2 1 4 4 C 1.53004 * 109.46980 * 119.99896 * 2 1 3 5 5 C 1.50704 * 109.46776 * 185.00502 * 4 2 1 6 6 O 1.21287 * 120.00497 * 359.97438 * 5 4 2 7 7 N 1.34780 * 119.99813 * 180.02562 * 5 4 2 8 8 C 1.39948 * 120.00137 * 175.38105 * 7 5 4 9 9 C 1.38996 * 119.99812 * 214.82760 * 8 7 5 10 10 C 1.38227 * 120.23378 * 179.72194 * 9 8 7 11 11 C 1.38003 * 120.22633 * 0.55566 * 10 9 8 12 12 C 1.39630 * 119.99204 * 359.71812 * 11 10 9 13 13 C 1.47741 * 120.11456 * 180.02562 * 12 11 10 14 14 O 1.21476 * 119.99548 * 179.97438 * 13 12 11 15 15 O 1.34709 * 120.00540 * 359.97438 * 13 12 11 16 16 C 1.38582 * 119.99927 * 35.10039 * 8 7 5 17 17 N 1.46901 * 109.47554 * 240.00010 * 2 1 3 18 18 C 1.46897 * 110.99984 * 84.99796 * 17 2 1 19 19 C 1.53003 * 109.47148 * 180.02562 * 18 17 2 20 20 C 1.50701 * 109.46964 * 180.02562 * 19 18 17 21 21 H 1.08003 * 120.00313 * 359.97438 * 20 19 18 22 22 C 1.37878 * 119.99560 * 180.02562 * 20 19 18 23 23 N 1.31516 * 119.99629 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 120.00409 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.46704 * 90.00580 * 24 22 20 26 26 H 1.48493 * 109.47196 * 210.00636 * 24 22 20 27 27 H 1.48507 * 109.46844 * 330.00854 * 24 22 20 28 28 H 1.08999 * 109.47171 * 300.00023 * 1 2 3 29 29 H 1.08998 * 109.46849 * 60.00092 * 1 2 3 30 30 H 1.09004 * 109.46958 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47082 * 65.00221 * 4 2 1 32 32 H 1.08999 * 109.47160 * 304.99586 * 4 2 1 33 33 H 0.97003 * 119.99688 * 355.38114 * 7 5 4 34 34 H 1.08004 * 119.88578 * 359.97438 * 9 8 7 35 35 H 1.08004 * 119.88619 * 180.27452 * 10 9 8 36 36 H 1.08001 * 120.00436 * 179.70151 * 11 10 9 37 37 H 0.96693 * 117.00319 * 179.97438 * 15 13 12 38 38 H 1.08004 * 120.11189 * 359.97438 * 16 8 7 39 39 H 1.00896 * 111.00007 * 208.95042 * 17 2 1 40 40 H 1.09002 * 109.47132 * 300.00725 * 18 17 2 41 41 H 1.08999 * 109.47001 * 59.99907 * 18 17 2 42 42 H 1.08999 * 109.47108 * 300.00016 * 19 18 17 43 43 H 1.08999 * 109.46772 * 60.00386 * 19 18 17 44 44 H 0.97003 * 119.99980 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 8 4.1451 -0.0209 0.4441 7 7 4.2150 -1.1804 2.3344 8 6 5.6143 -1.1655 2.3438 9 6 6.3171 -2.2420 2.8723 10 6 7.6994 -2.2351 2.8789 11 6 8.3911 -1.1542 2.3712 12 6 7.6946 -0.0652 1.8433 13 6 8.4324 1.0931 1.2986 14 8 7.8242 2.0391 0.8394 15 8 9.7794 1.1003 1.3112 16 6 6.2992 -0.0751 1.8315 17 7 2.0198 -0.6925 -1.1994 18 6 2.0825 0.2226 -2.3468 19 6 2.5952 -0.5332 -3.5744 20 6 2.6602 0.4058 -4.7514 21 1 2.3650 1.4382 -4.6356 22 6 3.0956 -0.0535 -5.9763 23 7 3.1528 0.7660 -7.0034 24 14 3.6056 -1.8393 -6.1769 25 1 2.4254 -2.6497 -6.5713 26 1 4.6495 -1.9409 -7.2281 27 1 4.1473 -2.3468 -4.8906 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7516 -1.7715 1.2056 32 1 1.6054 -0.2617 2.1370 33 1 3.7294 -1.5977 3.0631 34 1 5.7814 -3.0888 3.2754 35 1 8.2398 -3.0764 3.2868 36 1 9.4710 -1.1504 2.3826 37 1 10.2177 1.8798 0.9435 38 1 5.7548 0.7640 1.4241 39 1 2.9174 -1.1204 -1.0287 40 1 1.0871 0.6163 -2.5525 41 1 2.7589 1.0462 -2.1181 42 1 3.5906 -0.9272 -3.3690 43 1 1.9185 -1.3565 -3.8029 44 1 3.4595 0.4430 -7.8651 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609727077.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:40 Heat of formation + Delta-G solvation = -135.985323 kcal Electronic energy + Delta-G solvation = -26398.923452 eV Core-core repulsion = 22507.536482 eV Total energy + Delta-G solvation = -3891.386970 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.92532 -41.20332 -39.57750 -37.95830 -37.20799 -35.92218 -35.42627 -33.60846 -32.35136 -31.36064 -30.18650 -28.69602 -26.03133 -25.91424 -24.07906 -22.44372 -22.30035 -22.00201 -21.03233 -19.42689 -19.00651 -18.89261 -18.15301 -17.35708 -17.04095 -16.83449 -16.79324 -16.58269 -16.34893 -15.83642 -15.71867 -15.12032 -14.95964 -14.73906 -14.61072 -14.46837 -13.91158 -13.79968 -13.52088 -13.06417 -12.98541 -12.91379 -12.85137 -12.75197 -12.70011 -12.64789 -12.22860 -11.89291 -11.86245 -11.65210 -11.53280 -11.52877 -11.45976 -10.90221 -10.81068 -10.11777 -9.37981 -9.27916 -8.34432 -6.39339 -0.41919 0.21397 1.30805 1.33655 1.34332 1.47400 1.58038 1.82728 2.09226 2.33087 2.73115 3.00253 3.30059 3.58853 3.79950 3.83908 3.96252 4.09339 4.16664 4.32385 4.36294 4.38950 4.45333 4.53239 4.61583 4.67348 4.81045 4.84722 4.90100 4.95051 5.11494 5.16602 5.23157 5.26870 5.28791 5.36822 5.42588 5.47294 5.48411 5.58035 5.85766 6.12738 6.22107 6.35978 6.48343 6.68135 6.84913 7.10791 7.25133 8.82798 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009481 B = 0.003569 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2952.714381 B = 7844.535942 C = 9491.174383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.085 3.915 3 H 0.020 0.980 4 C -0.126 4.126 5 C 0.500 3.500 6 O -0.564 6.564 7 N -0.656 5.656 8 C 0.122 3.878 9 C -0.091 4.091 10 C -0.105 4.105 11 C -0.072 4.072 12 C -0.138 4.138 13 C 0.525 3.475 14 O -0.558 6.558 15 O -0.498 6.498 16 C -0.090 4.090 17 N -0.677 5.677 18 C 0.093 3.907 19 C 0.001 3.999 20 C -0.538 4.538 21 H 0.027 0.973 22 C 0.005 3.995 23 N -0.950 5.950 24 Si 0.958 3.042 25 H -0.257 1.257 26 H -0.280 1.280 27 H -0.256 1.256 28 H 0.084 0.916 29 H 0.035 0.965 30 H 0.074 0.926 31 H 0.135 0.865 32 H 0.144 0.856 33 H 0.435 0.565 34 H 0.175 0.825 35 H 0.179 0.821 36 H 0.159 0.841 37 H 0.432 0.568 38 H 0.111 0.889 39 H 0.334 0.666 40 H 0.059 0.941 41 H -0.006 1.006 42 H 0.005 0.995 43 H 0.028 0.972 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.121 -11.904 31.880 34.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.026 4.026 3 H 0.038 0.962 4 C -0.166 4.166 5 C 0.290 3.710 6 O -0.442 6.442 7 N -0.304 5.304 8 C 0.027 3.973 9 C -0.111 4.111 10 C -0.123 4.123 11 C -0.090 4.090 12 C -0.139 4.139 13 C 0.371 3.629 14 O -0.451 6.451 15 O -0.311 6.311 16 C -0.111 4.111 17 N -0.309 5.309 18 C -0.036 4.036 19 C -0.037 4.037 20 C -0.576 4.576 21 H 0.045 0.955 22 C -0.191 4.191 23 N -0.590 5.590 24 Si 0.780 3.220 25 H -0.182 1.182 26 H -0.205 1.205 27 H -0.180 1.180 28 H 0.103 0.897 29 H 0.054 0.946 30 H 0.093 0.907 31 H 0.153 0.847 32 H 0.162 0.838 33 H 0.276 0.724 34 H 0.193 0.807 35 H 0.196 0.804 36 H 0.177 0.823 37 H 0.294 0.706 38 H 0.129 0.871 39 H 0.152 0.848 40 H 0.077 0.923 41 H 0.013 0.987 42 H 0.023 0.977 43 H 0.046 0.954 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.539 -11.801 30.962 33.774 hybrid contribution 1.177 1.455 -0.869 2.063 sum 7.716 -10.346 30.093 32.744 Atomic orbital electron populations 1.21749 0.92240 1.03165 1.01786 1.21455 0.96988 0.95304 0.88832 0.96178 1.21957 0.88055 1.06096 1.00460 1.21747 0.92028 0.76950 0.80287 1.90845 1.71063 1.41996 1.40281 1.43366 1.03738 1.58403 1.24864 1.17745 0.83924 0.94122 1.01468 1.21671 0.95096 0.96027 0.98336 1.21482 0.93448 0.98804 0.98594 1.21743 1.01796 0.91383 0.94119 1.19015 0.92596 0.95285 1.07043 1.21234 0.81245 0.86020 0.74429 1.90929 1.70500 1.38267 1.45360 1.84471 1.19157 1.50325 1.77168 1.21271 0.93150 0.98405 0.98295 1.60837 1.32927 1.32720 1.04449 1.21537 0.98472 0.93059 0.90557 1.19381 0.95564 0.95886 0.92858 1.21403 1.44309 0.96808 0.95099 0.95466 1.26039 0.94736 1.03268 0.95106 1.70072 1.49006 1.37978 1.01986 0.85549 0.78956 0.78998 0.78458 1.18172 1.20507 1.17975 0.89718 0.94625 0.90714 0.84667 0.83776 0.72377 0.80729 0.80399 0.82332 0.70568 0.87101 0.84759 0.92289 0.98725 0.97661 0.95363 0.92294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 9.41 71.98 0.68 -2.28 16 2 C 0.08 2.34 2.21 44.92 0.10 2.44 16 3 H 0.02 0.68 7.61 -2.38 -0.02 0.67 16 4 C -0.13 -2.09 5.30 29.85 0.16 -1.93 16 5 C 0.50 11.69 7.14 87.66 0.63 12.31 16 6 O -0.56 -20.73 12.01 -3.05 -0.04 -20.77 16 7 N -0.66 -9.95 5.34 -303.60 -1.62 -11.57 16 8 C 0.12 2.35 6.29 38.11 0.24 2.59 16 9 C -0.09 -1.00 9.96 22.45 0.22 -0.77 16 10 C -0.11 -1.04 10.02 22.21 0.22 -0.82 16 11 C -0.07 -1.12 9.61 22.55 0.22 -0.90 16 12 C -0.14 -3.42 5.87 -20.11 -0.12 -3.53 16 13 C 0.52 14.55 8.27 70.33 0.58 15.13 16 14 O -0.56 -20.97 17.13 19.92 0.34 -20.62 16 15 O -0.50 -8.97 12.68 -56.19 -0.71 -9.68 16 16 C -0.09 -2.54 8.24 22.67 0.19 -2.36 16 17 N -0.68 -24.91 6.18 -491.56 -3.04 -27.95 16 18 C 0.09 4.41 5.42 86.30 0.47 4.88 16 19 C 0.00 0.05 4.30 29.85 0.13 0.18 16 20 C -0.54 -34.52 9.66 25.60 0.25 -34.28 16 21 H 0.03 1.91 7.99 -2.91 -0.02 1.89 16 22 C 0.01 0.34 5.47 84.65 0.46 0.80 16 23 N -0.95 -63.41 13.96 21.45 0.30 -63.11 16 24 Si 0.96 48.04 27.47 68.60 1.88 49.92 16 25 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 26 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 27 H -0.26 -12.34 6.54 99.48 0.65 -11.69 16 28 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.03 0.98 7.45 -2.39 -0.02 0.96 16 30 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.14 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.44 2.14 8.82 -92.71 -0.82 1.33 16 34 H 0.18 0.46 8.06 -2.91 -0.02 0.44 16 35 H 0.18 0.34 8.06 -2.91 -0.02 0.32 16 36 H 0.16 1.76 7.60 -2.91 -0.02 1.74 16 37 H 0.43 4.24 9.11 -74.06 -0.67 3.57 16 38 H 0.11 4.12 5.81 -2.91 -0.02 4.10 16 39 H 0.33 12.78 6.50 -89.70 -0.58 12.20 16 40 H 0.06 2.77 7.44 -2.39 -0.02 2.75 16 41 H -0.01 -0.29 8.05 -2.39 -0.02 -0.31 16 42 H 0.01 0.28 7.20 -2.39 -0.02 0.26 16 43 H 0.03 1.46 7.57 -2.39 -0.02 1.44 16 44 H 0.27 16.53 8.31 -92.71 -0.77 15.76 16 Total: -1.00 -96.05 370.87 0.46 -95.59 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -1.08 Total: 16.76 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: 4.42 Total: -8.55 kcal Atomic # 7 Polarization: -98.28 SS G_CDS: -4.36 Total: -102.64 kcal Atomic # 8 Polarization: -50.67 SS G_CDS: -0.41 Total: -51.08 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 1.88 Total: 49.92 kcal Total: -96.05 0.46 -95.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609727077.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.400 kcal (2) G-P(sol) polarization free energy of solvation -96.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds