Wall clock time and date at job start Tue Mar 31 2020 13:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47481 * 2 1 4 4 N 1.46903 * 109.46827 * 239.99357 * 2 1 3 5 5 C 1.46903 * 110.99496 * 85.00309 * 4 2 1 6 6 C 1.50697 * 109.46778 * 179.97438 * 5 4 2 7 7 O 1.21289 * 120.00376 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99793 * 179.97438 * 6 5 4 9 9 C 1.37105 * 119.99966 * 180.02562 * 8 6 5 10 10 H 1.07995 * 119.99982 * 0.02562 * 9 8 6 11 11 C 1.38945 * 120.00165 * 180.02562 * 9 8 6 12 12 N 1.31416 * 119.99923 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00182 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46841 * 60.00190 * 13 11 9 15 15 H 1.48501 * 109.47107 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47162 * 300.00042 * 13 11 9 17 17 C 1.53002 * 109.46799 * 119.99809 * 2 1 3 18 18 H 1.09004 * 109.46592 * 179.97438 * 17 2 1 19 19 C 1.52992 * 109.47303 * 299.99562 * 17 2 1 20 20 C 1.50709 * 109.47306 * 185.00263 * 19 17 2 21 21 C 1.38231 * 119.99785 * 269.72982 * 20 19 17 22 22 C 1.38232 * 119.99838 * 179.76419 * 21 20 19 23 23 C 1.38240 * 119.99951 * 0.50741 * 22 21 20 24 24 C 1.38234 * 119.99728 * 359.74549 * 23 22 21 25 25 C 1.38229 * 119.99874 * 89.99836 * 20 19 17 26 26 C 1.50700 * 109.47318 * 59.99959 * 17 2 1 27 27 O 1.20822 * 119.99958 * 239.99536 * 26 17 2 28 28 O 1.34234 * 120.00068 * 59.99727 * 26 17 2 29 29 H 1.09008 * 109.47040 * 300.00341 * 1 2 3 30 30 H 1.09000 * 109.47446 * 60.00357 * 1 2 3 31 31 H 1.09005 * 109.47154 * 180.02562 * 1 2 3 32 32 H 1.00899 * 111.00467 * 321.05039 * 4 2 1 33 33 H 1.08997 * 109.47126 * 299.99533 * 5 4 2 34 34 H 1.09000 * 109.47340 * 59.99663 * 5 4 2 35 35 H 0.96993 * 120.00282 * 0.02562 * 8 6 5 36 36 H 0.96999 * 120.00104 * 179.97438 * 12 11 9 37 37 H 1.09005 * 109.47369 * 305.00067 * 19 17 2 38 38 H 1.08999 * 109.47251 * 65.00616 * 19 17 2 39 39 H 1.08000 * 120.00041 * 359.97438 * 21 20 19 40 40 H 1.07999 * 120.00638 * 180.23164 * 22 21 20 41 41 H 1.07994 * 120.00410 * 179.72539 * 23 22 21 42 42 H 1.08004 * 120.00200 * 179.97438 * 24 23 22 43 43 H 1.08002 * 120.00268 * 0.02562 * 25 20 19 44 44 H 0.96698 * 117.00153 * 179.97438 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6927 -1.1994 5 6 2.0824 0.2224 -2.3469 6 6 2.5884 -0.5218 -3.5556 7 8 2.8686 -1.6987 -3.4699 8 7 2.7285 0.1203 -4.7324 9 6 3.1883 -0.5569 -5.8323 10 1 3.4378 -1.6048 -5.7559 11 6 3.3333 0.1051 -7.0453 12 7 3.0292 1.3802 -7.1384 13 14 3.9605 -0.8174 -8.5437 14 1 3.0393 -1.9396 -8.8553 15 1 4.0246 0.1078 -9.7035 16 1 5.3167 -1.3533 -8.2631 17 6 2.0399 -0.7212 1.2493 18 1 3.1300 -0.7216 1.2490 19 6 1.5300 0.0001 2.4985 20 6 2.1309 -0.6352 3.7259 21 6 1.4791 -1.6809 4.3524 22 6 2.0327 -2.2668 5.4753 23 6 3.2329 -1.8001 5.9780 24 6 3.8820 -0.7510 5.3546 25 6 3.3311 -0.1685 4.2285 26 6 1.5376 -2.1420 1.2494 27 8 0.8430 -2.5372 2.1556 28 8 1.8618 -2.9686 0.2427 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.4495 -1.4981 -1.4100 33 1 1.0870 0.6161 -2.5525 34 1 2.7588 1.0460 -2.1183 35 1 2.5041 1.0614 -4.8011 36 1 3.1308 1.8424 -7.9851 37 1 1.8185 1.0504 2.4548 38 1 0.4437 -0.0768 2.5445 39 1 0.5391 -2.0424 3.9624 40 1 1.5254 -3.0863 5.9627 41 1 3.6632 -2.2549 6.8580 42 1 4.8195 -0.3860 5.7475 43 1 3.8380 0.6516 3.7418 44 1 1.5164 -3.8707 0.2867 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609775394.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:57 Heat of formation + Delta-G solvation = -102.829714 kcal Electronic energy + Delta-G solvation = -26680.181672 eV Core-core repulsion = 22790.232437 eV Total energy + Delta-G solvation = -3889.949235 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.79581 -39.08322 -38.34924 -36.92213 -36.06332 -34.07136 -33.55686 -31.29789 -30.92310 -30.89415 -28.48160 -26.59605 -25.34264 -23.91979 -22.77132 -22.65808 -21.23665 -19.81337 -19.24667 -18.07359 -17.86775 -17.11525 -16.70670 -16.14428 -15.57463 -15.29369 -15.04697 -14.89766 -14.56940 -14.49476 -13.96751 -13.81687 -13.60570 -13.53193 -13.14075 -13.04340 -12.79288 -12.61221 -12.24533 -12.12180 -11.73673 -11.62373 -11.54237 -11.37380 -11.34632 -11.26644 -11.01678 -10.96885 -10.80838 -10.43461 -10.20865 -10.17977 -9.48191 -8.95106 -8.75144 -8.43359 -8.02711 -7.93721 -6.40288 -3.80941 1.24314 1.36786 2.29243 3.14136 3.21018 3.26477 3.30950 3.67761 3.93286 4.05144 4.26319 4.53101 4.73675 4.80853 4.90208 4.90506 4.96373 5.07619 5.13443 5.20211 5.24138 5.28551 5.41187 5.43620 5.49744 5.62532 5.65189 5.72927 5.79581 5.83697 5.93357 6.00208 6.03111 6.10304 6.28387 6.37782 6.42926 6.60506 6.73339 6.97771 7.19873 7.56401 7.72021 8.06108 8.08270 8.63369 9.19664 9.56308 10.08190 10.77483 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.027395 B = 0.002355 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.837699 B =11887.311185 C =11937.954981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.091 3.909 3 H 0.094 0.906 4 N -0.656 5.656 5 C 0.049 3.951 6 C 0.441 3.559 7 O -0.579 6.579 8 N -0.565 5.565 9 C -0.298 4.298 10 H 0.102 0.898 11 C 0.022 3.978 12 N -0.903 5.903 13 Si 0.930 3.070 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.274 1.274 17 C -0.065 4.065 18 H 0.116 0.884 19 C -0.067 4.067 20 C -0.094 4.094 21 C -0.087 4.087 22 C -0.132 4.132 23 C -0.124 4.124 24 C -0.130 4.130 25 C -0.115 4.115 26 C 0.487 3.513 27 O -0.522 6.522 28 O -0.492 6.492 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.357 0.643 33 H 0.043 0.957 34 H 0.086 0.914 35 H 0.392 0.608 36 H 0.271 0.729 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.144 0.856 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.183 -0.092 22.370 22.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.020 4.020 3 H 0.113 0.887 4 N -0.290 5.290 5 C -0.083 4.083 6 C 0.226 3.774 7 O -0.463 6.463 8 N -0.202 5.202 9 C -0.428 4.428 10 H 0.120 0.880 11 C -0.180 4.180 12 N -0.545 5.545 13 Si 0.758 3.242 14 H -0.200 1.200 15 H -0.210 1.210 16 H -0.199 1.199 17 C -0.085 4.085 18 H 0.134 0.866 19 C -0.104 4.104 20 C -0.094 4.094 21 C -0.105 4.105 22 C -0.150 4.150 23 C -0.142 4.142 24 C -0.148 4.148 25 C -0.133 4.133 26 C 0.331 3.669 27 O -0.412 6.412 28 O -0.301 6.301 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.179 0.821 33 H 0.061 0.939 34 H 0.104 0.896 35 H 0.225 0.775 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.162 0.838 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.136 0.864 43 H 0.139 0.861 44 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -3.344 -0.397 22.599 22.849 hybrid contribution -0.878 -0.350 -1.012 1.385 sum -4.222 -0.747 21.587 22.009 Atomic orbital electron populations 1.22685 0.97131 1.02368 1.02908 1.21509 0.92644 0.98172 0.89711 0.88745 1.60145 1.57943 1.08819 1.02089 1.21722 0.99865 0.95749 0.90991 1.19807 0.85126 0.88278 0.84140 1.90535 1.55012 1.16191 1.84538 1.41862 1.57986 1.12455 1.07938 1.19646 1.39974 0.96403 0.86772 0.88007 1.25251 0.97718 0.95782 0.99230 1.69604 1.48768 1.08847 1.27237 0.85924 0.79461 0.78805 0.80061 1.19953 1.21017 1.19897 1.21143 1.03575 0.88058 0.95723 0.86589 1.20576 1.01397 0.98830 0.89611 1.19812 0.95374 0.97307 0.96866 1.21602 1.01177 0.94222 0.93509 1.21208 0.96348 1.00383 0.97103 1.21146 0.95816 0.97235 0.99975 1.21071 1.00027 0.97197 0.96538 1.21089 0.95490 1.00190 0.96540 1.23414 0.76676 0.88640 0.78199 1.90591 1.37025 1.77802 1.35829 1.84765 1.71539 1.26721 1.47119 0.91457 0.91734 0.92689 0.82124 0.93908 0.89575 0.77507 0.91866 0.89485 0.89749 0.83825 0.86529 0.86604 0.86376 0.86125 0.73981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.95 8.56 37.16 0.32 -1.64 16 2 C 0.09 1.01 2.42 -67.71 -0.16 0.85 16 3 H 0.09 0.93 7.80 -51.93 -0.40 0.52 16 4 N -0.66 -10.07 5.14 -107.99 -0.56 -10.62 16 5 C 0.05 0.83 5.96 -4.98 -0.03 0.80 16 6 C 0.44 10.26 7.82 -10.99 -0.09 10.18 16 7 O -0.58 -15.58 15.78 5.55 0.09 -15.49 16 8 N -0.57 -14.20 5.29 -10.96 -0.06 -14.26 16 9 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 10 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 11 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 12 N -0.90 -24.47 13.05 55.50 0.72 -23.75 16 13 Si 0.93 21.04 29.55 -169.99 -5.02 16.02 16 14 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 15 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 16 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 17 C -0.07 -0.70 2.34 -91.77 -0.21 -0.92 16 18 H 0.12 1.33 8.14 -51.93 -0.42 0.91 16 19 C -0.07 -0.61 4.09 -27.88 -0.11 -0.72 16 20 C -0.09 -0.99 4.84 -104.62 -0.51 -1.49 16 21 C -0.09 -0.99 7.93 -39.59 -0.31 -1.31 16 22 C -0.13 -1.38 10.05 -39.58 -0.40 -1.78 16 23 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 24 C -0.13 -1.24 10.05 -39.58 -0.40 -1.64 16 25 C -0.12 -1.13 9.70 -39.59 -0.38 -1.52 16 26 C 0.49 5.95 6.07 36.01 0.22 6.17 16 27 O -0.52 -6.80 12.36 -18.75 -0.23 -7.03 16 28 O -0.49 -6.12 11.22 -39.27 -0.44 -6.57 16 29 H 0.07 0.57 6.55 -51.92 -0.34 0.23 16 30 H 0.06 0.67 7.45 -51.93 -0.39 0.28 16 31 H 0.05 0.61 7.20 -51.93 -0.37 0.24 16 32 H 0.36 5.91 6.62 -39.29 -0.26 5.65 16 33 H 0.04 0.65 7.44 -51.93 -0.39 0.26 16 34 H 0.09 1.32 8.06 -51.93 -0.42 0.90 16 35 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 36 H 0.27 6.98 8.31 -40.82 -0.34 6.65 16 37 H 0.09 0.63 8.09 -51.93 -0.42 0.21 16 38 H 0.08 0.77 6.46 -51.93 -0.34 0.43 16 39 H 0.14 1.72 5.86 -52.49 -0.31 1.41 16 40 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.12 0.89 8.06 -52.48 -0.42 0.46 16 43 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 44 H 0.40 3.41 9.10 45.56 0.41 3.82 16 LS Contribution 363.13 15.07 5.47 5.47 Total: -1.00 -33.05 363.13 -7.90 -40.96 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: -5.17 Total: 17.84 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -2.71 Total: -2.57 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: 0.11 Total: -48.63 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -0.58 Total: -29.09 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.05 -7.90 -40.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609775394.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.874 kcal (2) G-P(sol) polarization free energy of solvation -33.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds