Wall clock time and date at job start Tue Mar 31 2020 13:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.47080 * 2 1 4 4 N 1.46906 * 109.47142 * 119.98864 * 2 1 3 5 5 C 1.46900 * 111.00254 * 275.00482 * 4 2 1 6 6 C 1.50698 * 109.47022 * 179.97438 * 5 4 2 7 7 O 1.21294 * 119.99734 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00005 * 180.02562 * 6 5 4 9 9 C 1.37093 * 119.99833 * 180.02562 * 8 6 5 10 10 H 1.07997 * 120.00615 * 359.97438 * 9 8 6 11 11 C 1.38953 * 119.99896 * 179.97438 * 9 8 6 12 12 N 1.31417 * 119.99789 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00132 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47058 * 60.00179 * 13 11 9 15 15 H 1.48500 * 109.47347 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47233 * 300.00388 * 13 11 9 17 17 C 1.52993 * 109.47680 * 239.99496 * 2 1 3 18 18 H 1.09002 * 109.47379 * 185.00092 * 17 2 1 19 19 C 1.53000 * 109.47086 * 64.99472 * 17 2 1 20 20 C 1.50704 * 109.46969 * 173.80848 * 19 17 2 21 21 C 1.38234 * 120.00107 * 274.52292 * 20 19 17 22 22 C 1.38234 * 120.00257 * 180.32616 * 21 20 19 23 23 C 1.38230 * 119.99502 * 359.94842 * 22 21 20 24 24 C 1.38232 * 120.00604 * 0.03007 * 23 22 21 25 25 C 1.38234 * 119.99889 * 94.80036 * 20 19 17 26 26 C 1.50700 * 109.46861 * 305.00019 * 17 2 1 27 27 O 1.20829 * 119.99920 * 85.38031 * 26 17 2 28 28 O 1.34232 * 120.00134 * 265.37996 * 26 17 2 29 29 H 1.08999 * 109.46887 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47658 * 300.00851 * 1 2 3 31 31 H 1.09004 * 109.47127 * 60.01044 * 1 2 3 32 32 H 1.00903 * 110.99290 * 38.95423 * 4 2 1 33 33 H 1.08999 * 109.47051 * 300.00168 * 5 4 2 34 34 H 1.09001 * 109.46842 * 59.99724 * 5 4 2 35 35 H 0.97001 * 119.99879 * 359.97438 * 8 6 5 36 36 H 0.97000 * 119.99210 * 179.97438 * 12 11 9 37 37 H 1.09006 * 109.46895 * 53.81260 * 19 17 2 38 38 H 1.08998 * 109.47785 * 293.81081 * 19 17 2 39 39 H 1.08006 * 119.99932 * 0.28010 * 21 20 19 40 40 H 1.07995 * 120.00202 * 179.97438 * 22 21 20 41 41 H 1.08004 * 119.99891 * 180.02562 * 23 22 21 42 42 H 1.07998 * 120.00357 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.00073 * 359.72125 * 25 20 19 44 44 H 0.96697 * 117.00273 * 179.97438 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6923 1.1996 5 6 2.0824 0.2230 2.3469 6 6 2.5872 -0.5213 3.5562 7 8 2.8677 -1.6982 3.4704 8 7 2.7271 0.1209 4.7328 9 6 3.1869 -0.5561 5.8327 10 1 3.4367 -1.6040 5.7565 11 6 3.3316 0.1061 7.0457 12 7 3.0272 1.3812 7.1386 13 14 3.9574 -0.8164 8.5446 14 1 5.3134 -1.3531 8.2650 15 1 4.0203 0.1086 9.7046 16 1 3.0356 -1.9382 8.8560 17 6 2.0401 -0.7213 -1.2491 18 1 3.1264 -0.7995 -1.2054 19 6 1.6353 0.0687 -2.4953 20 6 2.2650 -0.5569 -3.7131 21 6 3.5504 -0.2080 -4.0830 22 6 4.1256 -0.7768 -5.2040 23 6 3.4157 -1.6953 -5.9544 24 6 2.1304 -2.0447 -5.5843 25 6 1.5551 -1.4755 -4.4636 26 6 1.4392 -2.1019 -1.3124 27 8 0.3512 -2.2649 -1.8120 28 8 2.1128 -3.1505 -0.8139 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.4495 -1.4977 1.4103 33 1 2.7587 1.0466 2.1182 34 1 1.0869 0.6166 2.5524 35 1 2.5032 1.0622 4.8012 36 1 3.1280 1.8433 7.9855 37 1 1.9765 1.0994 -2.3987 38 1 0.5503 0.0533 -2.5988 39 1 4.1051 0.5097 -3.4967 40 1 5.1296 -0.5039 -5.4932 41 1 3.8651 -2.1401 -6.8300 42 1 1.5757 -2.7620 -6.1708 43 1 0.5508 -1.7481 -4.1746 44 1 1.6866 -4.0162 -0.8771 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609775395.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:00 Heat of formation + Delta-G solvation = -111.798169 kcal Electronic energy + Delta-G solvation = -26573.944357 eV Core-core repulsion = 22683.606220 eV Total energy + Delta-G solvation = -3890.338136 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.79009 -39.22655 -38.37641 -36.99350 -35.93498 -34.14690 -33.67090 -31.32155 -31.06096 -30.91967 -28.51920 -26.58834 -25.39811 -23.97320 -22.90260 -22.64236 -21.29907 -19.85452 -19.22850 -18.05608 -17.90348 -17.07887 -16.51624 -16.34610 -15.77471 -15.38079 -15.16334 -15.05934 -14.57542 -14.45582 -14.02542 -13.74590 -13.59013 -13.56075 -13.19732 -13.11769 -12.89380 -12.70650 -12.23643 -12.13663 -11.74973 -11.62072 -11.55363 -11.51267 -11.38346 -11.25959 -11.07952 -11.02215 -10.90176 -10.43933 -10.27358 -10.20685 -9.49477 -9.09824 -8.91798 -8.48071 -8.08951 -7.95559 -6.41287 -3.82006 1.13426 1.22394 2.26652 3.11614 3.20577 3.26157 3.30636 3.55526 3.90997 3.99577 4.23482 4.50798 4.66356 4.77935 4.82554 4.89689 4.92168 5.00845 5.10464 5.18212 5.24728 5.26684 5.33126 5.39015 5.43564 5.56756 5.66539 5.73541 5.76636 5.82019 5.87114 5.91801 5.98955 6.14502 6.25898 6.27910 6.33134 6.45753 6.59499 6.82481 7.13211 7.55537 7.57398 8.00367 8.06456 8.61825 9.18375 9.54654 10.06316 10.76400 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025574 B = 0.002359 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.605586 B =11864.384212 C =11926.202870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.092 3.908 3 H 0.098 0.902 4 N -0.661 5.661 5 C 0.050 3.950 6 C 0.440 3.560 7 O -0.581 6.581 8 N -0.564 5.564 9 C -0.299 4.299 10 H 0.102 0.898 11 C 0.022 3.978 12 N -0.902 5.902 13 Si 0.931 3.069 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.274 1.274 17 C -0.064 4.064 18 H 0.112 0.888 19 C -0.072 4.072 20 C -0.090 4.090 21 C -0.112 4.112 22 C -0.122 4.122 23 C -0.124 4.124 24 C -0.123 4.123 25 C -0.110 4.110 26 C 0.493 3.507 27 O -0.523 6.523 28 O -0.501 6.501 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.350 0.650 33 H 0.088 0.912 34 H 0.045 0.955 35 H 0.392 0.608 36 H 0.272 0.728 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.128 0.872 44 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.005 -0.117 -23.320 23.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.019 4.019 3 H 0.116 0.884 4 N -0.293 5.293 5 C -0.082 4.082 6 C 0.226 3.774 7 O -0.465 6.465 8 N -0.201 5.201 9 C -0.429 4.429 10 H 0.120 0.880 11 C -0.180 4.180 12 N -0.544 5.544 13 Si 0.758 3.242 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.199 1.199 17 C -0.084 4.084 18 H 0.130 0.870 19 C -0.109 4.109 20 C -0.090 4.090 21 C -0.130 4.130 22 C -0.140 4.140 23 C -0.142 4.142 24 C -0.141 4.141 25 C -0.128 4.128 26 C 0.336 3.664 27 O -0.413 6.413 28 O -0.310 6.310 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.170 0.830 33 H 0.106 0.894 34 H 0.063 0.937 35 H 0.225 0.775 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.142 0.858 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.146 0.854 44 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -2.233 -0.365 -23.440 23.549 hybrid contribution -1.026 -0.333 1.015 1.482 sum -3.259 -0.698 -22.425 22.671 Atomic orbital electron populations 1.22682 0.96618 1.03147 1.02657 1.21521 0.93122 0.98101 0.89153 0.88442 1.60177 1.57514 1.09040 1.02530 1.21715 1.00053 0.95665 0.90782 1.19793 0.85213 0.88270 0.84162 1.90536 1.55140 1.16232 1.84569 1.41852 1.57859 1.12451 1.07914 1.19650 1.40014 0.96423 0.86766 0.87987 1.25260 0.97671 0.95786 0.99241 1.69609 1.48676 1.08850 1.27248 0.85916 0.79466 0.78806 0.80025 1.19871 1.20999 1.19946 1.21090 1.03442 0.88174 0.95742 0.86996 1.20650 1.02058 0.98683 0.89523 1.19886 0.94621 0.97689 0.96781 1.21112 0.94729 1.00187 0.97004 1.21141 0.99875 0.97363 0.95580 1.21159 0.94920 0.98181 0.99934 1.21164 0.95598 1.00083 0.97256 1.21279 1.00496 0.96230 0.94773 1.23280 0.82941 0.87426 0.72726 1.90646 1.21688 1.86158 1.42778 1.84679 1.51842 1.19398 1.75106 0.91949 0.92038 0.91411 0.82975 0.89372 0.93705 0.77470 0.91842 0.89151 0.89208 0.85772 0.86078 0.86313 0.86276 0.85414 0.73837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.14 8.36 37.16 0.31 -1.83 16 2 C 0.09 1.07 2.37 -67.71 -0.16 0.91 16 3 H 0.10 0.98 7.80 -51.93 -0.40 0.58 16 4 N -0.66 -10.38 5.66 -107.99 -0.61 -10.99 16 5 C 0.05 0.86 5.97 -4.98 -0.03 0.83 16 6 C 0.44 10.31 7.82 -10.99 -0.09 10.22 16 7 O -0.58 -15.76 15.78 5.55 0.09 -15.67 16 8 N -0.56 -14.21 5.29 -10.96 -0.06 -14.27 16 9 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 10 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 11 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 12 N -0.90 -24.48 13.05 55.50 0.72 -23.75 16 13 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 14 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 15 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 16 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 17 C -0.06 -0.72 2.27 -91.78 -0.21 -0.93 16 18 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 19 C -0.07 -0.66 4.20 -27.88 -0.12 -0.77 16 20 C -0.09 -0.90 4.77 -104.62 -0.50 -1.40 16 21 C -0.11 -1.05 9.72 -39.58 -0.38 -1.43 16 22 C -0.12 -1.07 10.05 -39.59 -0.40 -1.47 16 23 C -0.12 -1.09 10.05 -39.59 -0.40 -1.48 16 24 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 25 C -0.11 -1.15 8.82 -39.58 -0.35 -1.50 16 26 C 0.49 6.21 5.26 36.01 0.19 6.40 16 27 O -0.52 -7.11 14.01 -18.75 -0.26 -7.38 16 28 O -0.50 -6.26 13.42 -39.26 -0.53 -6.79 16 29 H 0.06 0.79 6.39 -51.93 -0.33 0.46 16 30 H 0.06 0.69 7.45 -51.93 -0.39 0.30 16 31 H 0.07 0.65 6.71 -51.93 -0.35 0.30 16 32 H 0.35 6.00 7.94 -39.29 -0.31 5.69 16 33 H 0.09 1.35 8.05 -51.93 -0.42 0.93 16 34 H 0.04 0.69 7.44 -51.93 -0.39 0.30 16 35 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 36 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 37 H 0.09 0.65 8.11 -51.93 -0.42 0.23 16 38 H 0.09 0.85 6.28 -51.93 -0.33 0.53 16 39 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 40 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 41 H 0.12 0.79 8.06 -52.48 -0.42 0.36 16 42 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 43 H 0.13 1.40 7.03 -52.49 -0.37 1.03 16 44 H 0.40 3.40 9.10 45.56 0.41 3.81 16 LS Contribution 369.00 15.07 5.56 5.56 Total: -1.00 -33.33 369.00 -8.12 -41.44 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: -5.24 Total: 17.78 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -2.77 Total: -1.99 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: 0.05 Total: -49.01 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -0.70 Total: -29.84 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.33 -8.12 -41.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609775395.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.355 kcal (2) G-P(sol) polarization free energy of solvation -33.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds