Wall clock time and date at job start Tue Mar 31 2020 13:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46026 * 2 1 4 4 C 1.54810 * 109.45534 * 240.03152 * 2 1 3 5 5 O 1.38010 * 109.47619 * 172.09364 * 4 2 1 6 6 C 1.42154 * 119.43730 * 63.42322 * 5 4 2 7 7 C 1.51534 * 108.75890 * 272.77094 * 6 5 4 8 8 C 1.53576 * 109.58237 * 91.40689 * 7 6 5 9 9 N 1.45121 * 109.46126 * 119.95768 * 2 1 3 10 10 C 1.34773 * 118.75717 * 29.28674 * 9 2 1 11 11 O 1.21584 * 120.00485 * 5.17508 * 10 9 2 12 12 N 1.34780 * 119.99851 * 185.18060 * 10 9 2 13 13 C 1.40027 * 120.00263 * 185.18742 * 12 10 9 14 14 C 1.38910 * 120.00211 * 208.73414 * 13 12 10 15 15 C 1.38013 * 119.99718 * 179.74725 * 14 13 12 16 16 C 1.38902 * 119.99993 * 0.54008 * 15 14 13 17 17 O 1.35782 * 119.99601 * 179.72529 * 16 15 14 18 18 C 1.34822 * 116.99868 * 185.48998 * 17 16 15 19 19 H 1.07995 * 119.99782 * 5.12852 * 18 17 16 20 20 C 1.38627 * 119.99759 * 185.13204 * 18 17 16 21 21 N 1.31574 * 120.00541 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99850 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47106 * 89.99679 * 22 20 18 24 24 H 1.48500 * 109.47075 * 210.00072 * 22 20 18 25 25 H 1.48500 * 109.46868 * 329.99683 * 22 20 18 26 26 C 1.38900 * 120.00282 * 359.70984 * 16 15 14 27 27 C 1.38008 * 120.00230 * 0.02562 * 26 16 15 28 28 H 1.09003 * 109.47043 * 164.41542 * 1 2 3 29 29 H 1.08994 * 109.47394 * 44.40893 * 1 2 3 30 30 H 1.09002 * 109.46532 * 284.41182 * 1 2 3 31 31 H 1.08996 * 109.47176 * 292.09637 * 4 2 1 32 32 H 1.08998 * 109.46826 * 52.09405 * 4 2 1 33 33 H 1.08998 * 109.58880 * 32.55427 * 6 5 4 34 34 H 1.09005 * 109.59193 * 152.84409 * 6 5 4 35 35 H 1.08999 * 109.45514 * 211.43773 * 7 6 5 36 36 H 1.08998 * 109.45156 * 331.39517 * 7 6 5 37 37 H 1.08997 * 109.16585 * 80.41873 * 8 7 6 38 38 H 1.08994 * 109.16844 * 199.67531 * 8 7 6 39 39 H 0.97002 * 120.00286 * 5.17638 * 12 10 9 40 40 H 1.07994 * 119.99794 * 0.02562 * 14 13 12 41 41 H 1.08001 * 119.99670 * 180.27323 * 15 14 13 42 42 H 0.97000 * 120.00273 * 180.02562 * 21 20 18 43 43 H 1.08003 * 120.00063 * 179.97438 * 26 16 15 44 44 H 1.08004 * 120.00102 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0457 -0.7292 -1.2645 5 8 3.4141 -0.5764 -1.3580 6 6 4.2490 -1.1254 -0.3468 7 6 4.3927 -0.1115 0.7701 8 6 3.3005 -0.3480 1.8236 9 7 2.0135 -0.6833 1.1855 10 6 1.2579 -1.6608 1.7240 11 8 0.2397 -2.0200 1.1650 12 7 1.6310 -2.2401 2.8824 13 6 0.9072 -3.3277 3.3862 14 6 0.8576 -3.5545 4.7557 15 6 0.1398 -4.6236 5.2526 16 6 -0.5236 -5.4791 4.3824 17 8 -1.2251 -6.5341 4.8710 18 6 -1.7502 -7.3896 3.9708 19 1 -1.5351 -7.2665 2.9197 20 6 -2.5662 -8.4270 4.3947 21 7 -2.8287 -8.5765 5.6753 22 14 -3.2932 -9.6127 3.1476 23 1 -2.3644 -10.7544 2.9504 24 1 -4.5982 -10.1165 3.6459 25 1 -3.4948 -8.9096 1.8553 26 6 -0.4697 -5.2554 3.0126 27 6 0.2434 -4.1833 2.5160 28 1 -0.3633 -0.9899 -0.2761 29 1 -0.3634 0.7341 -0.7191 30 1 -0.3632 0.2558 0.9954 31 1 1.8022 -1.7894 -1.1972 32 1 1.5714 -0.3029 -2.1485 33 1 3.7984 -2.0379 0.0436 34 1 5.2295 -1.3523 -0.7657 35 1 5.3734 -0.2186 1.2337 36 1 4.2917 0.8943 0.3625 37 1 3.6023 -1.1691 2.4738 38 1 3.1782 0.5552 2.4213 39 1 2.4010 -1.9037 3.3670 40 1 1.3769 -2.8917 5.4320 41 1 0.0976 -4.7973 6.3177 42 1 -3.3994 -9.3026 5.9718 43 1 -0.9853 -5.9209 2.3360 44 1 0.2850 -4.0091 1.4509 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645620338.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:38 Heat of formation + Delta-G solvation = -42.657168 kcal Electronic energy + Delta-G solvation = -27334.695652 eV Core-core repulsion = 23447.355695 eV Total energy + Delta-G solvation = -3887.339958 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.19308 -39.36492 -38.53509 -36.75054 -35.59835 -34.58166 -33.32989 -32.15805 -30.36080 -30.16708 -27.69402 -27.29298 -25.42323 -25.23370 -23.08937 -22.24071 -21.85126 -21.06036 -19.47924 -18.24018 -17.80451 -17.35797 -16.88692 -16.72879 -16.50890 -15.90018 -15.40053 -14.61449 -14.53831 -14.36488 -14.25245 -13.82204 -13.59146 -13.53407 -13.42751 -12.94613 -12.84527 -12.53012 -12.40340 -12.21352 -11.86738 -11.69301 -11.61874 -11.51338 -11.48303 -11.34614 -10.98979 -10.85149 -10.72550 -10.41615 -9.90260 -9.65930 -9.47146 -9.11802 -8.76922 -8.63346 -8.17054 -6.85232 -6.41558 -3.99009 2.16248 2.25685 2.54370 3.13883 3.16998 3.21785 3.27263 3.49279 3.78490 4.00540 4.32777 4.44849 4.60390 4.64604 4.81020 4.87590 5.01246 5.06954 5.13975 5.21142 5.27205 5.29497 5.39004 5.52669 5.58853 5.68150 5.68907 5.70863 5.75090 5.94245 6.08684 6.13735 6.25864 6.38971 6.60965 6.66301 6.77078 6.97675 7.11767 7.15942 7.31300 7.36128 7.47566 7.81788 7.95674 8.03758 8.65914 9.04488 9.74602 10.76623 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021545 B = 0.002819 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.321605 B = 9929.931468 C =10500.266408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.127 3.873 3 H 0.083 0.917 4 C 0.063 3.937 5 O -0.390 6.390 6 C 0.073 3.927 7 C -0.164 4.164 8 C 0.106 3.894 9 N -0.628 5.628 10 C 0.697 3.303 11 O -0.563 6.563 12 N -0.675 5.675 13 C 0.056 3.944 14 C -0.099 4.099 15 C -0.176 4.176 16 C 0.143 3.857 17 O -0.179 6.179 18 C -0.389 4.389 19 H 0.091 0.909 20 C 0.039 3.961 21 N -0.864 5.864 22 Si 0.940 3.060 23 H -0.273 1.273 24 H -0.278 1.278 25 H -0.267 1.267 26 C -0.216 4.216 27 C -0.069 4.069 28 H 0.097 0.903 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.104 0.896 33 H 0.054 0.946 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.396 0.604 40 H 0.113 0.887 41 H 0.121 0.879 42 H 0.269 0.731 43 H 0.130 0.870 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.366 17.667 -9.661 24.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.022 3.978 3 H 0.102 0.898 4 C -0.016 4.016 5 O -0.308 6.308 6 C -0.004 4.004 7 C -0.202 4.202 8 C -0.017 4.017 9 N -0.367 5.367 10 C 0.399 3.601 11 O -0.440 6.440 12 N -0.324 5.324 13 C -0.037 4.037 14 C -0.120 4.120 15 C -0.195 4.195 16 C 0.089 3.911 17 O -0.082 6.082 18 C -0.466 4.466 19 H 0.109 0.891 20 C -0.165 4.165 21 N -0.499 5.499 22 Si 0.765 3.235 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.236 4.236 27 C -0.090 4.090 28 H 0.115 0.885 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.122 0.878 33 H 0.072 0.928 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.232 0.768 40 H 0.131 0.869 41 H 0.139 0.861 42 H 0.079 0.921 43 H 0.147 0.853 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 13.517 17.292 -9.861 24.062 hybrid contribution -0.043 -0.399 0.040 0.403 sum 13.474 16.893 -9.821 23.736 Atomic orbital electron populations 1.22240 0.92590 1.04310 1.01986 1.21837 0.96263 0.95662 0.84017 0.89849 1.22661 0.81078 1.00122 0.97739 1.86256 1.17280 1.78532 1.48752 1.22190 0.94452 0.95329 0.88401 1.22457 0.98894 1.01774 0.97110 1.21887 0.83300 1.01257 0.95287 1.47289 1.20510 1.38770 1.30166 1.16016 0.83152 0.79521 0.81362 1.90887 1.25633 1.64923 1.62527 1.42668 1.32653 1.33568 1.23484 1.17081 1.03888 0.90693 0.92030 1.20261 1.00968 0.98399 0.92382 1.19953 1.03273 0.97322 0.98997 1.19400 0.91593 0.88345 0.91774 1.83988 1.58938 1.30108 1.35177 1.21315 1.29193 1.06494 0.89569 0.89112 1.25269 0.96362 0.97779 0.97115 1.70044 1.35209 1.30907 1.13783 0.85727 0.78509 0.79789 0.79523 1.19908 1.20286 1.19156 1.21109 1.06146 1.00977 0.95377 1.20846 0.96411 0.92299 0.99400 0.88458 0.93225 0.92438 0.93213 0.87846 0.92761 0.89178 0.89429 0.90046 0.90347 0.91451 0.76829 0.86930 0.86110 0.92080 0.85276 0.85553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 7.82 37.16 0.29 -1.49 16 2 C 0.13 1.29 2.72 -67.71 -0.18 1.11 16 3 H 0.08 0.74 8.11 -51.93 -0.42 0.32 16 4 C 0.06 0.63 6.06 38.11 0.23 0.87 16 5 O -0.39 -3.96 9.86 -26.52 -0.26 -4.22 16 6 C 0.07 0.60 6.37 36.42 0.23 0.83 16 7 C -0.16 -1.01 5.78 -27.17 -0.16 -1.17 16 8 C 0.11 0.77 5.92 -3.19 -0.02 0.75 16 9 N -0.63 -6.75 2.16 -170.55 -0.37 -7.12 16 10 C 0.70 10.08 7.52 -86.92 -0.65 9.42 16 11 O -0.56 -10.02 10.12 5.29 0.05 -9.97 16 12 N -0.67 -9.39 5.14 -14.18 -0.07 -9.46 16 13 C 0.06 1.00 6.36 -83.61 -0.53 0.47 16 14 C -0.10 -1.74 9.94 -39.41 -0.39 -2.13 16 15 C -0.18 -3.67 9.98 -39.42 -0.39 -4.06 16 16 C 0.14 3.49 6.65 -39.09 -0.26 3.23 16 17 O -0.18 -5.14 9.76 -0.03 0.00 -5.14 16 18 C -0.39 -11.05 9.44 30.88 0.29 -10.75 16 19 H 0.09 2.40 5.28 -52.49 -0.28 2.13 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 21 N -0.86 -25.58 13.67 55.48 0.76 -24.82 16 22 Si 0.94 20.87 29.55 -169.99 -5.02 15.85 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 24 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 26 C -0.22 -4.93 9.13 -39.42 -0.36 -5.29 16 27 C -0.07 -1.41 8.67 -39.42 -0.34 -1.75 16 28 H 0.10 1.38 5.99 -51.93 -0.31 1.07 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.76 7.69 -51.93 -0.40 0.36 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.53 7.40 -51.93 -0.38 0.15 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.52 8.01 -51.93 -0.42 0.11 16 37 H 0.08 0.51 5.93 -51.93 -0.31 0.20 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.40 4.11 6.40 -40.82 -0.26 3.85 16 40 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.12 2.40 8.06 -52.49 -0.42 1.97 16 42 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.13 2.98 5.70 -52.48 -0.30 2.68 16 44 H 0.13 2.56 6.08 -52.48 -0.32 2.24 16 LS Contribution 349.34 15.07 5.26 5.26 Total: -1.00 -33.23 349.34 -7.91 -41.14 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -5.91 Total: 7.48 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: -2.34 Total: -9.00 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: 0.32 Total: -41.40 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.21 Total: -19.33 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.23 -7.91 -41.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645620338.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.521 kcal (2) G-P(sol) polarization free energy of solvation -33.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds