Wall clock time and date at job start Tue Mar 31 2020 12:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 110.78180 * 2 1 4 4 C 1.55162 * 110.72271 * 236.76222 * 2 1 3 5 5 C 1.54908 * 101.58293 * 206.13563 * 4 2 1 6 6 N 1.47421 * 104.83143 * 37.00886 * 5 4 2 7 7 C 1.34778 * 125.64649 * 155.60870 * 6 5 4 8 8 O 1.21592 * 120.00177 * 180.02562 * 7 6 5 9 9 N 1.34779 * 120.00232 * 0.02562 * 7 6 5 10 10 C 1.40022 * 120.00459 * 175.49697 * 9 7 6 11 11 C 1.38906 * 120.00394 * 214.85261 * 10 9 7 12 12 C 1.38012 * 119.99823 * 179.78827 * 11 10 9 13 13 C 1.38905 * 120.00264 * 0.46767 * 12 11 10 14 14 O 1.35775 * 120.00096 * 179.76303 * 13 12 11 15 15 C 1.34817 * 117.00100 * 185.36590 * 14 13 12 16 16 H 1.07999 * 120.00014 * 354.97150 * 15 14 13 17 17 C 1.38630 * 120.00283 * 174.96311 * 15 14 13 18 18 N 1.31568 * 120.00087 * 179.97438 * 17 15 14 19 19 Si 1.86808 * 119.99601 * 0.02562 * 17 15 14 20 20 H 1.48494 * 109.46889 * 89.99744 * 19 17 15 21 21 H 1.48502 * 109.46720 * 209.99548 * 19 17 15 22 22 H 1.48497 * 109.47179 * 329.99677 * 19 17 15 23 23 C 1.38912 * 119.99842 * 359.78959 * 13 12 11 24 24 C 1.38003 * 120.00012 * 359.97438 * 23 13 12 25 25 C 1.47024 * 108.70539 * 335.86719 * 6 5 4 26 26 H 1.09004 * 109.87841 * 120.47467 * 25 6 5 27 27 C 1.52999 * 109.88482 * 241.64480 * 25 6 5 28 28 O 1.42907 * 109.46671 * 293.54674 * 27 25 6 29 29 H 1.09001 * 109.47585 * 181.78247 * 1 2 3 30 30 H 1.09005 * 109.46878 * 301.78257 * 1 2 3 31 31 H 1.09003 * 109.47305 * 61.78561 * 1 2 3 32 32 H 1.08997 * 111.00354 * 88.05821 * 4 2 1 33 33 H 1.09006 * 110.99836 * 324.20904 * 4 2 1 34 34 H 1.08994 * 110.36549 * 278.16647 * 5 4 2 35 35 H 1.09002 * 110.36126 * 155.84765 * 5 4 2 36 36 H 0.97001 * 119.99660 * 355.50412 * 9 7 6 37 37 H 1.08000 * 119.99877 * 0.03086 * 11 10 9 38 38 H 1.08000 * 119.99832 * 180.23549 * 12 11 10 39 39 H 0.97001 * 119.99747 * 180.02562 * 18 17 15 40 40 H 1.07995 * 119.99562 * 179.97438 * 23 13 12 41 41 H 1.08000 * 119.99992 * 180.02562 * 24 23 13 42 42 H 1.08995 * 109.46980 * 53.54269 * 27 25 6 43 43 H 1.08994 * 109.46703 * 173.55015 * 27 25 6 44 44 H 0.96703 * 113.99356 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0790 -0.7954 -1.2138 5 6 3.4632 -1.2498 -0.6875 6 7 3.2444 -1.5507 0.7389 7 6 3.9888 -2.3880 1.4882 8 8 3.7149 -2.5615 2.6601 9 7 5.0368 -3.0330 0.9386 10 6 5.8666 -3.8289 1.7377 11 6 7.2277 -3.9011 1.4697 12 6 8.0461 -4.6821 2.2601 13 6 7.5074 -5.4037 3.3177 14 8 8.3118 -6.1759 4.0924 15 6 7.7120 -6.9359 5.0306 16 1 6.6478 -6.8519 5.1941 17 6 8.4612 -7.8253 5.7852 18 7 7.8758 -8.5666 6.7011 19 14 10.3021 -7.9701 5.5026 20 1 11.0149 -7.0091 6.3820 21 1 10.7441 -9.3522 5.8187 22 1 10.6104 -7.6644 4.0825 23 6 6.1454 -5.3357 3.5825 24 6 5.3277 -4.5509 2.7951 25 6 2.0760 -0.7911 1.2073 26 1 1.3129 -1.4758 1.5775 27 6 2.4944 0.1757 2.3168 28 8 2.9050 -0.5675 3.4663 29 1 -0.3634 -1.0271 0.0320 30 1 -0.3633 0.5413 0.8736 31 1 -0.3634 0.4859 -0.9056 32 1 2.1849 -0.1518 -2.0871 33 1 1.4451 -1.6536 -1.4375 34 1 4.1931 -0.4479 -0.7985 35 1 3.7959 -2.1426 -1.2170 36 1 5.2164 -2.9457 -0.0107 37 1 7.6460 -3.3429 0.6452 38 1 9.1049 -4.7353 2.0541 39 1 8.4002 -9.1886 7.2294 40 1 5.7265 -5.8971 4.4045 41 1 4.2689 -4.4977 3.0012 42 1 3.3226 0.7924 1.9680 43 1 1.6510 0.8143 2.5793 44 1 3.1849 -0.0175 4.2108 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647157121.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:30 Heat of formation + Delta-G solvation = -61.373875 kcal Electronic energy + Delta-G solvation = -26909.795661 eV Core-core repulsion = 23021.644086 eV Total energy + Delta-G solvation = -3888.151575 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.64950 -39.23623 -38.19220 -36.36229 -36.23962 -33.91132 -32.95118 -32.19380 -30.56649 -30.16035 -28.58011 -27.30672 -25.04552 -24.17870 -23.13375 -22.23701 -21.34173 -20.54228 -19.42716 -18.37466 -17.62760 -17.25001 -17.06996 -16.88805 -16.06501 -15.22569 -15.04845 -14.59611 -14.39279 -14.02903 -13.83773 -13.75473 -13.71845 -13.62539 -13.48068 -13.03137 -12.68934 -12.42512 -12.29449 -12.22412 -12.15082 -11.89336 -11.55339 -11.50578 -11.32115 -11.18708 -11.07463 -10.88103 -10.64078 -10.17730 -9.93192 -9.63922 -9.52926 -9.11337 -8.68934 -8.60754 -8.16360 -6.91758 -6.32759 -3.98288 2.16658 2.26278 2.63756 3.27865 3.30679 3.45412 3.51240 3.86242 4.02450 4.13588 4.30680 4.34282 4.59918 4.64408 4.84057 4.92298 4.94755 5.03187 5.06039 5.14955 5.19118 5.19768 5.22690 5.31395 5.50889 5.54965 5.65414 5.67295 5.69643 5.76149 5.93230 6.07989 6.20876 6.25241 6.43195 6.72157 6.80940 6.98864 7.23342 7.30653 7.43481 7.71169 7.76716 7.90319 8.12676 8.15589 8.90785 9.02661 9.65782 10.75195 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.028708 B = 0.002603 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.113407 B =10755.568491 C =11262.794610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 H 0.086 0.914 4 C -0.127 4.127 5 C 0.096 3.904 6 N -0.635 5.635 7 C 0.710 3.290 8 O -0.529 6.529 9 N -0.680 5.680 10 C 0.070 3.930 11 C -0.101 4.101 12 C -0.177 4.177 13 C 0.148 3.852 14 O -0.220 6.220 15 C -0.386 4.386 16 H 0.107 0.893 17 C 0.062 3.938 18 N -0.882 5.882 19 Si 0.906 3.094 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.260 1.260 23 C -0.204 4.204 24 C -0.066 4.066 25 C 0.162 3.838 26 H 0.081 0.919 27 C 0.065 3.935 28 O -0.530 6.530 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.394 0.606 37 H 0.114 0.886 38 H 0.120 0.880 39 H 0.278 0.722 40 H 0.135 0.865 41 H 0.129 0.871 42 H 0.039 0.961 43 H 0.046 0.954 44 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.149 19.614 -17.812 29.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 H 0.105 0.895 4 C -0.165 4.165 5 C -0.027 4.027 6 N -0.375 5.375 7 C 0.412 3.588 8 O -0.401 6.401 9 N -0.329 5.329 10 C -0.023 4.023 11 C -0.122 4.122 12 C -0.197 4.197 13 C 0.096 3.904 14 O -0.125 6.125 15 C -0.462 4.462 16 H 0.124 0.876 17 C -0.141 4.141 18 N -0.521 5.521 19 Si 0.731 3.269 20 H -0.200 1.200 21 H -0.209 1.209 22 H -0.184 1.184 23 C -0.224 4.224 24 C -0.087 4.087 25 C 0.058 3.942 26 H 0.099 0.901 27 C -0.015 4.015 28 O -0.332 6.332 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.228 0.772 37 H 0.132 0.868 38 H 0.138 0.862 39 H 0.088 0.912 40 H 0.153 0.847 41 H 0.147 0.853 42 H 0.057 0.943 43 H 0.064 0.936 44 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -12.198 18.724 -17.066 28.118 hybrid contribution 0.919 0.504 -0.157 1.060 sum -11.278 19.228 -17.223 28.170 Atomic orbital electron populations 1.21772 0.93393 1.02589 1.02245 1.22192 0.96578 0.99321 0.93638 0.89527 1.22851 0.95750 1.00438 0.97420 1.22267 0.97724 1.00503 0.82228 1.47612 1.32188 1.47358 1.10354 1.15483 0.79938 0.78826 0.84559 1.91030 1.70128 1.65382 1.13564 1.42382 1.29502 1.50058 1.10920 1.17099 0.88889 0.98685 0.97653 1.20303 0.90998 1.00521 1.00383 1.19940 0.99562 1.03119 0.97085 1.19129 0.89651 0.91427 0.90151 1.83559 1.34748 1.50927 1.43279 1.20779 0.95950 1.17655 1.11829 0.87615 1.24458 1.00115 0.94530 0.95006 1.69661 1.36926 1.23805 1.21660 0.86177 0.83501 0.77231 0.79946 1.19969 1.20930 1.18379 1.21232 0.93358 1.04340 1.03476 1.20955 1.00225 0.93334 0.94155 1.21455 0.87516 0.92505 0.92755 0.90134 1.22519 0.97606 0.93414 0.87959 1.87042 1.87598 1.34766 1.23823 0.92059 0.92163 0.91881 0.89708 0.90228 0.91659 0.90939 0.77234 0.86829 0.86212 0.91169 0.84693 0.85290 0.94251 0.93615 0.78953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.72 9.14 37.15 0.34 -0.38 16 2 C -0.10 -0.60 3.07 -88.79 -0.27 -0.87 16 3 H 0.09 0.45 7.85 -51.93 -0.41 0.04 16 4 C -0.13 -0.68 6.53 -24.58 -0.16 -0.84 16 5 C 0.10 0.72 6.62 -2.53 -0.02 0.70 16 6 N -0.63 -7.46 3.06 -168.69 -0.52 -7.98 16 7 C 0.71 11.46 8.07 -86.92 -0.70 10.76 16 8 O -0.53 -10.75 11.06 -18.81 -0.21 -10.96 16 9 N -0.68 -10.18 5.30 -14.18 -0.08 -10.25 16 10 C 0.07 1.29 6.30 -83.62 -0.53 0.76 16 11 C -0.10 -1.77 9.96 -39.42 -0.39 -2.17 16 12 C -0.18 -3.59 9.99 -39.42 -0.39 -3.99 16 13 C 0.15 3.58 6.65 -39.09 -0.26 3.32 16 14 O -0.22 -5.98 8.58 0.01 0.00 -5.98 16 15 C -0.39 -11.27 9.94 30.88 0.31 -10.96 16 16 H 0.11 3.18 5.43 -52.49 -0.28 2.89 16 17 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 18 N -0.88 -26.23 13.96 55.48 0.77 -25.45 16 19 Si 0.91 22.19 28.62 -169.99 -4.86 17.33 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.26 -6.34 7.11 56.52 0.40 -5.94 16 23 C -0.20 -4.80 9.16 -39.42 -0.36 -5.16 16 24 C -0.07 -1.41 8.69 -39.42 -0.34 -1.76 16 25 C 0.16 1.66 2.89 -66.95 -0.19 1.46 16 26 H 0.08 0.97 7.79 -51.93 -0.40 0.57 16 27 C 0.06 0.67 6.47 37.16 0.24 0.91 16 28 O -0.53 -7.57 10.34 -59.33 -0.61 -8.18 16 29 H 0.06 0.35 8.09 -51.93 -0.42 -0.07 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.45 8.05 -51.93 -0.42 0.03 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.47 7.22 -51.93 -0.37 0.10 16 36 H 0.39 4.45 7.27 -40.82 -0.30 4.16 16 37 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 38 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 39 H 0.28 7.63 8.31 -40.82 -0.34 7.29 16 40 H 0.14 3.34 5.63 -52.49 -0.30 3.05 16 41 H 0.13 2.82 6.22 -52.49 -0.33 2.49 16 42 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.37 3.82 9.12 45.56 0.42 4.23 16 LS Contribution 357.17 15.07 5.38 5.38 Total: -1.00 -35.57 357.17 -8.28 -43.86 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -5.33 Total: 8.77 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -2.83 Total: -6.54 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: 0.18 Total: -43.69 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.82 Total: -25.12 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.86 Total: 17.33 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.57 -8.28 -43.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647157121.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.518 kcal (2) G-P(sol) polarization free energy of solvation -35.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds