Wall clock time and date at job start Tue Mar 31 2020 12:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 110.78180 * 2 1 4 4 C 1.55162 * 110.72271 * 236.76222 * 2 1 3 5 5 C 1.54908 * 101.58293 * 206.13563 * 4 2 1 6 6 N 1.47421 * 104.83143 * 37.00886 * 5 4 2 7 7 C 1.34778 * 125.64649 * 155.60870 * 6 5 4 8 8 O 1.21592 * 120.00177 * 180.02562 * 7 6 5 9 9 N 1.34779 * 120.00232 * 0.02562 * 7 6 5 10 10 C 1.40022 * 120.00459 * 175.49697 * 9 7 6 11 11 C 1.38906 * 120.00394 * 214.85261 * 10 9 7 12 12 C 1.38012 * 119.99823 * 179.78827 * 11 10 9 13 13 C 1.38905 * 120.00264 * 0.46767 * 12 11 10 14 14 O 1.35775 * 120.00096 * 179.76303 * 13 12 11 15 15 C 1.34817 * 117.00100 * 185.36590 * 14 13 12 16 16 H 1.07999 * 120.00014 * 354.97150 * 15 14 13 17 17 C 1.38630 * 120.00283 * 174.96311 * 15 14 13 18 18 N 1.31568 * 120.00087 * 179.97438 * 17 15 14 19 19 Si 1.86808 * 119.99601 * 0.02562 * 17 15 14 20 20 H 1.48494 * 109.46889 * 89.99744 * 19 17 15 21 21 H 1.48502 * 109.46720 * 209.99548 * 19 17 15 22 22 H 1.48497 * 109.47179 * 329.99677 * 19 17 15 23 23 C 1.38912 * 119.99842 * 359.78959 * 13 12 11 24 24 C 1.38003 * 120.00012 * 359.97438 * 23 13 12 25 25 C 1.47024 * 108.70539 * 335.86719 * 6 5 4 26 26 H 1.09004 * 109.87841 * 120.47467 * 25 6 5 27 27 C 1.52999 * 109.88482 * 241.64480 * 25 6 5 28 28 O 1.42907 * 109.46671 * 293.54674 * 27 25 6 29 29 H 1.09001 * 109.47585 * 181.78247 * 1 2 3 30 30 H 1.09005 * 109.46878 * 301.78257 * 1 2 3 31 31 H 1.09003 * 109.47305 * 61.78561 * 1 2 3 32 32 H 1.08997 * 111.00354 * 88.05821 * 4 2 1 33 33 H 1.09006 * 110.99836 * 324.20904 * 4 2 1 34 34 H 1.08994 * 110.36549 * 278.16647 * 5 4 2 35 35 H 1.09002 * 110.36126 * 155.84765 * 5 4 2 36 36 H 0.97001 * 119.99660 * 355.50412 * 9 7 6 37 37 H 1.08000 * 119.99877 * 0.03086 * 11 10 9 38 38 H 1.08000 * 119.99832 * 180.23549 * 12 11 10 39 39 H 0.97001 * 119.99747 * 180.02562 * 18 17 15 40 40 H 1.07995 * 119.99562 * 179.97438 * 23 13 12 41 41 H 1.08000 * 119.99992 * 180.02562 * 24 23 13 42 42 H 1.08995 * 109.46980 * 53.54269 * 27 25 6 43 43 H 1.08994 * 109.46703 * 173.55015 * 27 25 6 44 44 H 0.96703 * 113.99356 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0790 -0.7954 -1.2138 5 6 3.4632 -1.2498 -0.6875 6 7 3.2444 -1.5507 0.7389 7 6 3.9888 -2.3880 1.4882 8 8 3.7149 -2.5615 2.6601 9 7 5.0368 -3.0330 0.9386 10 6 5.8666 -3.8289 1.7377 11 6 7.2277 -3.9011 1.4697 12 6 8.0461 -4.6821 2.2601 13 6 7.5074 -5.4037 3.3177 14 8 8.3118 -6.1759 4.0924 15 6 7.7120 -6.9359 5.0306 16 1 6.6478 -6.8519 5.1941 17 6 8.4612 -7.8253 5.7852 18 7 7.8758 -8.5666 6.7011 19 14 10.3021 -7.9701 5.5026 20 1 11.0149 -7.0091 6.3820 21 1 10.7441 -9.3522 5.8187 22 1 10.6104 -7.6644 4.0825 23 6 6.1454 -5.3357 3.5825 24 6 5.3277 -4.5509 2.7951 25 6 2.0760 -0.7911 1.2073 26 1 1.3129 -1.4758 1.5775 27 6 2.4944 0.1757 2.3168 28 8 2.9050 -0.5675 3.4663 29 1 -0.3634 -1.0271 0.0320 30 1 -0.3633 0.5413 0.8736 31 1 -0.3634 0.4859 -0.9056 32 1 2.1849 -0.1518 -2.0871 33 1 1.4451 -1.6536 -1.4375 34 1 4.1931 -0.4479 -0.7985 35 1 3.7959 -2.1426 -1.2170 36 1 5.2164 -2.9457 -0.0107 37 1 7.6460 -3.3429 0.6452 38 1 9.1049 -4.7353 2.0541 39 1 8.4002 -9.1886 7.2294 40 1 5.7265 -5.8971 4.4045 41 1 4.2689 -4.4977 3.0012 42 1 3.3226 0.7924 1.9680 43 1 1.6510 0.8143 2.5793 44 1 3.1849 -0.0175 4.2108 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647157121.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:29 Heat of formation + Delta-G solvation = -86.762927 kcal Electronic energy + Delta-G solvation = -26910.896613 eV Core-core repulsion = 23021.644086 eV Total energy + Delta-G solvation = -3889.252527 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.77266 -40.77452 -39.50377 -37.95153 -37.18514 -35.33226 -34.40700 -33.72588 -31.86594 -31.24821 -29.89478 -28.39700 -27.03551 -24.84560 -24.30036 -23.72023 -22.67731 -21.40144 -20.60954 -19.95572 -19.30678 -18.81807 -18.15356 -17.96134 -17.25112 -16.59603 -16.37178 -15.90566 -15.65798 -15.54156 -15.36805 -15.19693 -14.84377 -14.49013 -14.41773 -14.23151 -14.16721 -14.03112 -13.63492 -13.34254 -13.21685 -13.14019 -12.73939 -12.64755 -12.59629 -12.44218 -11.99591 -11.93221 -11.67570 -11.57181 -11.46542 -11.15476 -10.88379 -10.84337 -10.54910 -9.83668 -9.59738 -8.59708 -8.48061 -6.20422 0.51355 0.57424 1.32992 1.38548 1.53824 1.55841 2.22932 2.30398 2.79604 2.97757 3.07265 3.18996 3.24041 3.55334 3.77102 4.04792 4.10255 4.12139 4.17391 4.29276 4.42267 4.46676 4.48344 4.54060 4.56589 4.63633 4.69401 4.72879 4.91763 4.99998 5.05703 5.08138 5.14452 5.19647 5.25318 5.34034 5.45544 5.50113 5.53920 5.64002 5.76772 5.94450 6.09402 6.24642 6.85521 6.94943 7.02822 7.58540 7.68895 8.64109 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.028708 B = 0.002603 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.113407 B =10755.568491 C =11262.794610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.086 4.086 3 H 0.106 0.894 4 C -0.118 4.118 5 C 0.086 3.914 6 N -0.631 5.631 7 C 0.701 3.299 8 O -0.580 6.580 9 N -0.667 5.667 10 C 0.095 3.905 11 C -0.082 4.082 12 C -0.164 4.164 13 C 0.110 3.890 14 O -0.240 6.240 15 C -0.400 4.400 16 H 0.073 0.927 17 C 0.006 3.994 18 N -0.928 5.928 19 Si 0.977 3.023 20 H -0.266 1.266 21 H -0.268 1.268 22 H -0.257 1.257 23 C -0.221 4.221 24 C -0.081 4.081 25 C 0.152 3.848 26 H 0.051 0.949 27 C 0.060 3.940 28 O -0.567 6.567 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.116 0.884 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.417 0.583 37 H 0.171 0.829 38 H 0.146 0.854 39 H 0.285 0.715 40 H 0.102 0.898 41 H 0.115 0.885 42 H 0.047 0.953 43 H 0.070 0.930 44 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.038 22.667 -22.155 33.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.105 4.105 3 H 0.124 0.876 4 C -0.156 4.156 5 C -0.035 4.035 6 N -0.370 5.370 7 C 0.403 3.597 8 O -0.455 6.455 9 N -0.318 5.318 10 C 0.001 3.999 11 C -0.103 4.103 12 C -0.183 4.183 13 C 0.061 3.939 14 O -0.148 6.148 15 C -0.476 4.476 16 H 0.091 0.909 17 C -0.192 4.192 18 N -0.569 5.569 19 Si 0.799 3.201 20 H -0.191 1.191 21 H -0.192 1.192 22 H -0.181 1.181 23 C -0.241 4.241 24 C -0.102 4.102 25 C 0.048 3.952 26 H 0.069 0.931 27 C -0.019 4.019 28 O -0.372 6.372 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.135 0.865 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.255 0.745 37 H 0.189 0.811 38 H 0.164 0.836 39 H 0.094 0.906 40 H 0.120 0.880 41 H 0.133 0.867 42 H 0.065 0.935 43 H 0.088 0.912 44 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -11.137 21.848 -21.508 32.619 hybrid contribution 0.296 -0.189 0.987 1.048 sum -10.840 21.660 -20.521 31.745 Atomic orbital electron populations 1.21774 0.92664 1.02134 1.03283 1.22206 0.97014 0.99576 0.91740 0.87616 1.22883 0.94106 1.00719 0.97896 1.22649 0.99668 1.01823 0.79391 1.47650 1.31428 1.45826 1.12078 1.15755 0.80239 0.79322 0.84399 1.91017 1.71388 1.67037 1.16098 1.42188 1.28810 1.49119 1.11700 1.17222 0.90019 0.96649 0.96050 1.20790 0.89745 0.99062 1.00656 1.20370 1.01274 1.01425 0.95267 1.19641 0.89746 0.92740 0.91811 1.83495 1.34901 1.52317 1.44071 1.20677 0.94974 1.18819 1.13170 0.90927 1.25370 1.05268 0.93966 0.94561 1.69759 1.38984 1.25067 1.23058 0.85123 0.77078 0.78026 0.79884 1.19067 1.19244 1.18067 1.21091 0.94129 1.05284 1.03552 1.20877 0.99407 0.94293 0.95627 1.21741 0.86393 0.92342 0.94722 0.93061 1.22727 0.98699 0.93514 0.86919 1.87018 1.87988 1.36860 1.25382 0.93250 0.92202 0.89831 0.86522 0.90596 0.89752 0.89728 0.74500 0.81139 0.83604 0.90581 0.87963 0.86696 0.93460 0.91214 0.77800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.14 71.98 0.66 -0.40 16 2 C -0.09 -0.77 3.07 -9.61 -0.03 -0.80 16 3 H 0.11 0.61 7.85 -2.39 -0.02 0.60 16 4 C -0.12 -0.77 6.53 31.99 0.21 -0.57 16 5 C 0.09 0.93 6.62 86.86 0.57 1.51 16 6 N -0.63 -13.62 3.06 -805.88 -2.47 -16.09 16 7 C 0.70 21.97 8.07 179.05 1.45 23.41 16 8 O -0.58 -24.26 11.06 19.04 0.21 -24.05 16 9 N -0.67 -18.23 5.30 -317.04 -1.68 -19.91 16 10 C 0.10 3.35 6.30 38.16 0.24 3.59 16 11 C -0.08 -2.55 9.96 22.38 0.22 -2.33 16 12 C -0.16 -6.27 9.99 22.38 0.22 -6.04 16 13 C 0.11 5.43 6.65 22.59 0.15 5.58 16 14 O -0.24 -13.54 8.58 -22.89 -0.20 -13.74 16 15 C -0.40 -24.84 9.94 67.91 0.68 -24.17 16 16 H 0.07 4.84 5.43 -2.91 -0.02 4.82 16 17 C 0.01 0.37 5.49 84.83 0.47 0.83 16 18 N -0.93 -57.82 13.96 21.61 0.30 -57.52 16 19 Si 0.98 46.61 28.62 68.60 1.96 48.57 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 22 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 23 C -0.22 -11.10 9.16 22.38 0.20 -10.90 16 24 C -0.08 -3.60 8.69 22.38 0.19 -3.40 16 25 C 0.15 2.92 2.89 45.34 0.13 3.05 16 26 H 0.05 1.28 7.79 -2.39 -0.02 1.26 16 27 C 0.06 1.19 6.47 71.98 0.47 1.65 16 28 O -0.57 -16.68 10.34 -125.94 -1.30 -17.99 16 29 H 0.05 0.50 8.09 -2.39 -0.02 0.48 16 30 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 31 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 33 H 0.08 0.59 8.05 -2.38 -0.02 0.57 16 34 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.08 0.73 7.22 -2.39 -0.02 0.71 16 36 H 0.42 7.59 7.27 -92.71 -0.67 6.91 16 37 H 0.17 3.47 8.06 -2.91 -0.02 3.45 16 38 H 0.15 4.84 8.06 -2.91 -0.02 4.82 16 39 H 0.28 16.19 8.31 -92.71 -0.77 15.41 16 40 H 0.10 5.72 5.63 -2.91 -0.02 5.70 16 41 H 0.12 5.39 6.22 -2.91 -0.02 5.37 16 42 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.38 8.25 9.12 -74.06 -0.68 7.57 16 Total: -1.00 -85.01 357.17 2.36 -82.65 By element: Atomic # 1 Polarization: 27.36 SS G_CDS: -0.31 Total: 27.06 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: 5.83 Total: -8.99 kcal Atomic # 7 Polarization: -89.68 SS G_CDS: -3.85 Total: -93.52 kcal Atomic # 8 Polarization: -54.48 SS G_CDS: -1.29 Total: -55.77 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 1.96 Total: 48.57 kcal Total: -85.01 2.36 -82.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647157121.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.109 kcal (2) G-P(sol) polarization free energy of solvation -85.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds