Wall clock time and date at job start Tue Mar 31 2020 13:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.40187 * 2 1 4 4 C 1.47686 * 109.43735 * 240.10256 * 2 1 3 5 5 O 1.42566 * 113.66337 * 179.13570 * 4 2 1 6 6 C 1.40372 * 113.53110 * 87.75142 * 5 4 2 7 7 C 1.54303 * 109.91546 * 264.68962 * 6 5 4 8 8 N 1.48175 * 110.66136 * 39.41286 * 7 6 5 9 9 C 1.34774 * 118.51278 * 221.24454 * 8 7 6 10 10 O 1.21584 * 120.00011 * 354.76000 * 9 8 7 11 11 N 1.34783 * 119.99948 * 174.76504 * 9 8 7 12 12 C 1.40025 * 119.99744 * 184.50152 * 11 9 8 13 13 C 1.38914 * 120.00070 * 324.06237 * 12 11 9 14 14 C 1.38012 * 119.99642 * 179.74953 * 13 12 11 15 15 C 1.38909 * 120.00077 * 0.55222 * 14 13 12 16 16 O 1.35779 * 119.99740 * 179.72301 * 15 14 13 17 17 C 1.34810 * 116.99959 * 174.47362 * 16 15 14 18 18 H 1.08002 * 120.00046 * 5.10197 * 17 16 15 19 19 C 1.38632 * 120.00292 * 185.10068 * 17 16 15 20 20 N 1.31564 * 120.00120 * 180.02562 * 19 17 16 21 21 Si 1.86807 * 119.99516 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.46979 * 90.00379 * 21 19 17 23 23 H 1.48500 * 109.46690 * 209.99761 * 21 19 17 24 24 H 1.48494 * 109.47058 * 329.99925 * 21 19 17 25 25 C 1.38900 * 119.99957 * 359.70176 * 15 14 13 26 26 C 1.38004 * 120.00358 * 0.02562 * 25 15 14 27 27 C 1.44461 * 122.97341 * 41.22684 * 8 7 6 28 28 H 1.08997 * 109.47400 * 300.11249 * 1 2 3 29 29 H 1.08999 * 109.46925 * 60.10883 * 1 2 3 30 30 H 1.09001 * 109.47249 * 180.10828 * 1 2 3 31 31 H 1.08996 * 108.64959 * 300.21786 * 4 2 1 32 32 H 1.09003 * 108.64711 * 58.19493 * 4 2 1 33 33 H 1.08998 * 109.34265 * 144.58338 * 6 5 4 34 34 H 1.08997 * 109.41633 * 24.85005 * 6 5 4 35 35 H 1.09000 * 109.23134 * 279.11680 * 7 6 5 36 36 H 1.09002 * 109.22623 * 159.70420 * 7 6 5 37 37 H 0.96997 * 120.00206 * 4.48994 * 11 9 8 38 38 H 1.08001 * 119.99995 * 0.03032 * 13 12 11 39 39 H 1.07996 * 119.99771 * 180.27825 * 14 13 12 40 40 H 0.97003 * 120.00155 * 179.97438 * 20 19 17 41 41 H 1.08000 * 119.99654 * 180.02562 * 25 15 14 42 42 H 1.08008 * 120.00389 * 180.02562 * 26 25 15 43 43 H 1.09007 * 109.49682 * 31.03804 * 27 8 7 44 44 H 1.08997 * 109.49548 * 151.12493 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8920 1.0281 0.0000 4 6 2.0214 -0.6942 -1.2073 5 8 3.4431 -0.7295 -1.3083 6 6 4.0239 -1.8295 -0.6579 7 6 4.4688 -1.4252 0.7632 8 7 3.4705 -0.5254 1.3873 9 6 3.9122 0.5298 2.1000 10 8 5.1030 0.6731 2.2995 11 7 3.0339 1.4262 2.5915 12 6 3.4973 2.5715 3.2504 13 6 4.6343 2.5032 4.0456 14 6 5.0939 3.6334 4.6909 15 6 4.4131 4.8364 4.5543 16 8 4.8621 5.9469 5.1936 17 6 4.2248 7.1051 4.9293 18 1 3.3466 7.1070 4.3006 19 6 4.6967 8.2938 5.4644 20 7 4.0744 9.4240 5.2068 21 14 6.2152 8.2904 6.5524 22 1 7.4259 8.4764 5.7129 23 1 6.1209 9.3978 7.5372 24 1 6.3058 6.9945 7.2718 25 6 3.2732 4.9035 3.7634 26 6 2.8167 3.7748 3.1136 27 6 2.0453 -0.7278 1.2662 28 1 -0.3634 0.5156 0.8889 29 1 -0.3633 0.5121 -0.8910 30 1 -0.3634 -1.0277 0.0019 31 1 1.6473 -1.7179 -1.1974 32 1 1.6241 -0.1874 -2.0868 33 1 4.8904 -2.1684 -1.2258 34 1 3.2959 -2.6381 -0.5932 35 1 5.4288 -0.9121 0.7065 36 1 4.5761 -2.3213 1.3743 37 1 2.0808 1.2780 2.4888 38 1 5.1611 1.5668 4.1553 39 1 5.9804 3.5813 5.3055 40 1 4.4044 10.2556 5.5816 41 1 2.7441 5.8390 3.6569 42 1 1.9306 3.8270 2.4983 43 1 1.8350 -1.7943 1.1837 44 1 1.5446 -0.3250 2.1466 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650047030.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:50 Heat of formation + Delta-G solvation = -53.434864 kcal Electronic energy + Delta-G solvation = -27065.219372 eV Core-core repulsion = 23177.412058 eV Total energy + Delta-G solvation = -3887.807314 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.01610 -39.47920 -38.69443 -36.74954 -35.96335 -34.49202 -33.88310 -32.28035 -30.25632 -29.97693 -27.90771 -26.82138 -26.43240 -25.15832 -23.06224 -22.25647 -21.42204 -21.03024 -19.69313 -18.54058 -17.88304 -17.50870 -17.23408 -16.64016 -16.36106 -15.73308 -15.17352 -14.94233 -14.70275 -14.49376 -14.04371 -13.87785 -13.78504 -13.65716 -13.43961 -13.20111 -12.75229 -12.56978 -12.46050 -12.29441 -12.22536 -12.04158 -11.89266 -11.67421 -11.54444 -11.18361 -11.02917 -10.87474 -10.76558 -10.15228 -10.00066 -9.90371 -9.62044 -9.25257 -8.84215 -8.68883 -8.23218 -6.98728 -6.37733 -4.03367 2.11422 2.19767 2.52114 3.24199 3.27633 3.31521 3.45039 3.46654 3.86195 4.21936 4.28183 4.31880 4.53333 4.59799 4.66688 4.71342 4.86223 4.91600 4.94460 5.07078 5.14094 5.15288 5.20861 5.31197 5.37288 5.51249 5.53374 5.61334 5.69504 5.78111 5.80917 6.09275 6.15382 6.21608 6.37262 6.64095 6.76115 6.83059 6.92807 7.16256 7.16719 7.28413 7.65020 7.82782 7.95617 8.07424 8.64059 8.98072 9.61386 10.70054 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025154 B = 0.002687 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.886833 B =10418.458064 C =11019.791288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.151 4.151 3 H 0.087 0.913 4 C 0.068 3.932 5 O -0.363 6.363 6 C 0.049 3.951 7 C 0.102 3.898 8 N -0.622 5.622 9 C 0.701 3.299 10 O -0.573 6.573 11 N -0.675 5.675 12 C 0.063 3.937 13 C -0.070 4.070 14 C -0.177 4.177 15 C 0.151 3.849 16 O -0.218 6.218 17 C -0.388 4.388 18 H 0.106 0.894 19 C 0.063 3.937 20 N -0.882 5.882 21 Si 0.905 3.095 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.259 1.259 25 C -0.205 4.205 26 C -0.094 4.094 27 C 0.114 3.886 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.054 0.946 35 H 0.098 0.902 36 H 0.068 0.932 37 H 0.397 0.603 38 H 0.131 0.869 39 H 0.120 0.880 40 H 0.279 0.721 41 H 0.137 0.863 42 H 0.111 0.889 43 H 0.078 0.922 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.771 -24.420 -11.109 27.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.171 4.171 3 H 0.105 0.895 4 C -0.008 4.008 5 O -0.280 6.280 6 C -0.030 4.030 7 C -0.021 4.021 8 N -0.359 5.359 9 C 0.403 3.597 10 O -0.450 6.450 11 N -0.324 5.324 12 C -0.030 4.030 13 C -0.090 4.090 14 C -0.197 4.197 15 C 0.099 3.901 16 O -0.123 6.123 17 C -0.464 4.464 18 H 0.123 0.877 19 C -0.140 4.140 20 N -0.520 5.520 21 Si 0.731 3.269 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.183 1.183 25 C -0.225 4.225 26 C -0.114 4.114 27 C -0.010 4.010 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.103 0.897 33 H 0.114 0.886 34 H 0.072 0.928 35 H 0.116 0.884 36 H 0.086 0.914 37 H 0.233 0.767 38 H 0.149 0.851 39 H 0.138 0.862 40 H 0.089 0.911 41 H 0.155 0.845 42 H 0.129 0.871 43 H 0.097 0.903 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.610 -23.948 -10.894 27.127 hybrid contribution -0.295 -0.017 0.382 0.483 sum -6.905 -23.964 -10.513 27.064 Atomic orbital electron populations 1.21707 0.93264 1.02251 1.02937 1.21720 0.96750 1.02297 0.96374 0.89510 1.21580 0.81292 0.99987 0.97969 1.87518 1.19722 1.47111 1.73694 1.22925 0.98945 0.88603 0.92487 1.22530 0.93133 0.93524 0.92908 1.46854 1.05805 1.28331 1.54923 1.15941 0.85287 0.79712 0.78710 1.90907 1.14511 1.76327 1.63211 1.42528 1.08635 1.21787 1.59485 1.17118 0.99888 0.85292 1.00699 1.20755 0.95627 0.98311 0.94283 1.20146 1.02388 0.90867 1.06287 1.19141 0.92228 0.87523 0.91243 1.83584 1.55092 1.14675 1.58960 1.20752 1.11500 0.81445 1.32685 0.87672 1.24453 0.98668 0.93512 0.97383 1.69651 1.40237 0.98174 1.43943 0.86184 0.82019 0.78483 0.80253 1.19886 1.20865 1.18312 1.21065 0.99355 0.99076 1.03005 1.20498 1.00097 0.90751 1.00099 1.21571 0.81004 1.00960 0.97499 0.91694 0.91868 0.92324 0.93190 0.89688 0.88560 0.92763 0.88351 0.91355 0.76675 0.85143 0.86188 0.91115 0.84532 0.87057 0.90324 0.90322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.69 9.15 37.16 0.34 -0.35 16 2 C -0.15 -1.07 2.87 -92.20 -0.26 -1.34 16 3 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 4 C 0.07 0.49 5.26 34.59 0.18 0.67 16 5 O -0.36 -3.64 10.22 -33.79 -0.35 -3.98 16 6 C 0.05 0.36 6.49 37.84 0.25 0.60 16 7 C 0.10 0.97 6.53 -2.44 -0.02 0.96 16 8 N -0.62 -6.82 2.55 -177.65 -0.45 -7.28 16 9 C 0.70 10.65 8.04 -86.92 -0.70 9.95 16 10 O -0.57 -10.97 13.16 5.29 0.07 -10.90 16 11 N -0.68 -9.66 5.17 -14.18 -0.07 -9.73 16 12 C 0.06 1.13 6.29 -83.61 -0.53 0.61 16 13 C -0.07 -1.37 8.68 -39.41 -0.34 -1.71 16 14 C -0.18 -3.77 9.99 -39.42 -0.39 -4.16 16 15 C 0.15 3.58 6.65 -39.09 -0.26 3.32 16 16 O -0.22 -5.86 8.58 0.02 0.00 -5.86 16 17 C -0.39 -11.05 9.94 30.88 0.31 -10.74 16 18 H 0.11 3.03 5.43 -52.49 -0.28 2.74 16 19 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 20 N -0.88 -25.71 13.96 55.48 0.77 -24.93 16 21 Si 0.91 22.06 28.62 -169.99 -4.86 17.19 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.26 -6.34 7.11 56.52 0.40 -5.93 16 25 C -0.21 -4.45 9.16 -39.42 -0.36 -4.81 16 26 C -0.09 -1.71 9.96 -39.42 -0.39 -2.10 16 27 C 0.11 0.85 4.44 -4.14 -0.02 0.83 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.05 0.26 7.27 -51.93 -0.38 -0.12 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.28 7.20 -51.93 -0.37 -0.09 16 35 H 0.10 1.18 7.07 -51.93 -0.37 0.81 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.40 4.34 6.46 -40.82 -0.26 4.07 16 38 H 0.13 2.53 6.28 -52.49 -0.33 2.20 16 39 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 40 H 0.28 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.14 3.06 5.63 -52.49 -0.30 2.77 16 42 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 43 H 0.08 0.43 8.10 -51.92 -0.42 0.01 16 44 H 0.08 0.53 6.26 -51.93 -0.33 0.20 16 LS Contribution 353.66 15.07 5.33 5.33 Total: -1.00 -33.88 353.66 -7.84 -41.71 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -5.98 Total: 5.05 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -2.30 Total: -6.60 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 0.25 Total: -41.94 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.28 Total: -20.74 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.86 Total: 17.19 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.88 -7.84 -41.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650047030.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.723 kcal (2) G-P(sol) polarization free energy of solvation -33.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds