Wall clock time and date at job start Tue Mar 31 2020 13:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.40187 * 2 1 4 4 C 1.47686 * 109.43735 * 240.10256 * 2 1 3 5 5 O 1.42566 * 113.66337 * 179.13570 * 4 2 1 6 6 C 1.40372 * 113.53110 * 87.75142 * 5 4 2 7 7 C 1.54303 * 109.91546 * 264.68962 * 6 5 4 8 8 N 1.48175 * 110.66136 * 39.41286 * 7 6 5 9 9 C 1.34774 * 118.51278 * 221.24454 * 8 7 6 10 10 O 1.21584 * 120.00011 * 354.76000 * 9 8 7 11 11 N 1.34783 * 119.99948 * 174.76504 * 9 8 7 12 12 C 1.40025 * 119.99744 * 184.50152 * 11 9 8 13 13 C 1.38914 * 120.00070 * 324.06237 * 12 11 9 14 14 C 1.38012 * 119.99642 * 179.74953 * 13 12 11 15 15 C 1.38909 * 120.00077 * 0.55222 * 14 13 12 16 16 O 1.35779 * 119.99740 * 179.72301 * 15 14 13 17 17 C 1.34810 * 116.99959 * 174.47362 * 16 15 14 18 18 H 1.08002 * 120.00046 * 5.10197 * 17 16 15 19 19 C 1.38632 * 120.00292 * 185.10068 * 17 16 15 20 20 N 1.31564 * 120.00120 * 180.02562 * 19 17 16 21 21 Si 1.86807 * 119.99516 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.46979 * 90.00379 * 21 19 17 23 23 H 1.48500 * 109.46690 * 209.99761 * 21 19 17 24 24 H 1.48494 * 109.47058 * 329.99925 * 21 19 17 25 25 C 1.38900 * 119.99957 * 359.70176 * 15 14 13 26 26 C 1.38004 * 120.00358 * 0.02562 * 25 15 14 27 27 C 1.44461 * 122.97341 * 41.22684 * 8 7 6 28 28 H 1.08997 * 109.47400 * 300.11249 * 1 2 3 29 29 H 1.08999 * 109.46925 * 60.10883 * 1 2 3 30 30 H 1.09001 * 109.47249 * 180.10828 * 1 2 3 31 31 H 1.08996 * 108.64959 * 300.21786 * 4 2 1 32 32 H 1.09003 * 108.64711 * 58.19493 * 4 2 1 33 33 H 1.08998 * 109.34265 * 144.58338 * 6 5 4 34 34 H 1.08997 * 109.41633 * 24.85005 * 6 5 4 35 35 H 1.09000 * 109.23134 * 279.11680 * 7 6 5 36 36 H 1.09002 * 109.22623 * 159.70420 * 7 6 5 37 37 H 0.96997 * 120.00206 * 4.48994 * 11 9 8 38 38 H 1.08001 * 119.99995 * 0.03032 * 13 12 11 39 39 H 1.07996 * 119.99771 * 180.27825 * 14 13 12 40 40 H 0.97003 * 120.00155 * 179.97438 * 20 19 17 41 41 H 1.08000 * 119.99654 * 180.02562 * 25 15 14 42 42 H 1.08008 * 120.00389 * 180.02562 * 26 25 15 43 43 H 1.09007 * 109.49682 * 31.03804 * 27 8 7 44 44 H 1.08997 * 109.49548 * 151.12493 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8920 1.0281 0.0000 4 6 2.0214 -0.6942 -1.2073 5 8 3.4431 -0.7295 -1.3083 6 6 4.0239 -1.8295 -0.6579 7 6 4.4688 -1.4252 0.7632 8 7 3.4705 -0.5254 1.3873 9 6 3.9122 0.5298 2.1000 10 8 5.1030 0.6731 2.2995 11 7 3.0339 1.4262 2.5915 12 6 3.4973 2.5715 3.2504 13 6 4.6343 2.5032 4.0456 14 6 5.0939 3.6334 4.6909 15 6 4.4131 4.8364 4.5543 16 8 4.8621 5.9469 5.1936 17 6 4.2248 7.1051 4.9293 18 1 3.3466 7.1070 4.3006 19 6 4.6967 8.2938 5.4644 20 7 4.0744 9.4240 5.2068 21 14 6.2152 8.2904 6.5524 22 1 7.4259 8.4764 5.7129 23 1 6.1209 9.3978 7.5372 24 1 6.3058 6.9945 7.2718 25 6 3.2732 4.9035 3.7634 26 6 2.8167 3.7748 3.1136 27 6 2.0453 -0.7278 1.2662 28 1 -0.3634 0.5156 0.8889 29 1 -0.3633 0.5121 -0.8910 30 1 -0.3634 -1.0277 0.0019 31 1 1.6473 -1.7179 -1.1974 32 1 1.6241 -0.1874 -2.0868 33 1 4.8904 -2.1684 -1.2258 34 1 3.2959 -2.6381 -0.5932 35 1 5.4288 -0.9121 0.7065 36 1 4.5761 -2.3213 1.3743 37 1 2.0808 1.2780 2.4888 38 1 5.1611 1.5668 4.1553 39 1 5.9804 3.5813 5.3055 40 1 4.4044 10.2556 5.5816 41 1 2.7441 5.8390 3.6569 42 1 1.9306 3.8270 2.4983 43 1 1.8350 -1.7943 1.1837 44 1 1.5446 -0.3250 2.1466 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650047030.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:49 Heat of formation + Delta-G solvation = -75.896757 kcal Electronic energy + Delta-G solvation = -27066.193393 eV Core-core repulsion = 23177.412058 eV Total energy + Delta-G solvation = -3888.781334 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.06555 -40.85105 -39.94624 -38.33472 -36.78460 -35.45456 -35.09948 -34.33575 -31.90884 -30.85197 -29.33353 -27.45982 -27.29107 -26.84103 -24.14963 -23.84299 -22.57419 -21.88263 -20.90514 -19.79876 -19.50808 -19.09828 -18.39640 -17.55185 -17.26650 -16.77704 -16.55460 -16.11175 -15.94108 -15.65229 -15.59503 -15.42283 -15.06664 -14.56987 -14.51205 -14.46774 -14.16807 -13.97743 -13.83897 -13.39762 -13.29918 -12.99972 -12.91333 -12.72775 -12.62812 -12.55031 -12.37015 -11.98822 -11.75726 -11.55895 -11.44767 -11.26815 -11.01047 -10.64829 -10.61278 -9.87284 -9.68638 -8.64099 -8.48508 -6.19424 0.48502 0.53513 1.32361 1.36206 1.48663 1.53317 2.05476 2.29630 2.76421 2.77831 3.02562 3.04633 3.17449 3.66356 3.77014 3.93359 4.01811 4.11190 4.13573 4.18692 4.36166 4.42339 4.46809 4.50637 4.57967 4.64260 4.68827 4.72537 4.79338 4.89447 4.91070 5.06444 5.07963 5.14890 5.24419 5.33617 5.38299 5.49725 5.53599 5.60291 5.76424 5.82365 5.92915 6.21095 6.39221 6.85084 6.86357 7.45590 7.60868 8.62927 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025154 B = 0.002687 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.886833 B =10418.458064 C =11019.791288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.144 4.144 3 H 0.055 0.945 4 C 0.060 3.940 5 O -0.396 6.396 6 C 0.052 3.948 7 C 0.096 3.904 8 N -0.612 5.612 9 C 0.694 3.306 10 O -0.618 6.618 11 N -0.665 5.665 12 C 0.089 3.911 13 C -0.075 4.075 14 C -0.175 4.175 15 C 0.113 3.887 16 O -0.244 6.244 17 C -0.398 4.398 18 H 0.086 0.914 19 C 0.012 3.988 20 N -0.922 5.922 21 Si 0.966 3.034 22 H -0.269 1.269 23 H -0.266 1.266 24 H -0.264 1.264 25 C -0.211 4.211 26 C -0.086 4.086 27 C 0.105 3.895 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.417 0.583 38 H 0.136 0.864 39 H 0.127 0.873 40 H 0.284 0.716 41 H 0.123 0.877 42 H 0.150 0.850 43 H 0.110 0.890 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.093 -27.817 -12.019 31.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.165 4.165 3 H 0.074 0.926 4 C -0.016 4.016 5 O -0.314 6.314 6 C -0.026 4.026 7 C -0.026 4.026 8 N -0.347 5.347 9 C 0.396 3.604 10 O -0.498 6.498 11 N -0.316 5.316 12 C -0.005 4.005 13 C -0.096 4.096 14 C -0.195 4.195 15 C 0.064 3.936 16 O -0.152 6.152 17 C -0.474 4.474 18 H 0.104 0.896 19 C -0.187 4.187 20 N -0.563 5.563 21 Si 0.789 3.211 22 H -0.194 1.194 23 H -0.191 1.191 24 H -0.188 1.188 25 C -0.231 4.231 26 C -0.106 4.106 27 C -0.018 4.018 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.125 0.875 34 H 0.104 0.896 35 H 0.084 0.916 36 H 0.109 0.891 37 H 0.256 0.744 38 H 0.153 0.847 39 H 0.145 0.855 40 H 0.094 0.906 41 H 0.141 0.859 42 H 0.168 0.832 43 H 0.128 0.872 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.000 -27.426 -11.852 30.930 hybrid contribution -0.001 0.680 0.454 0.818 sum -8.001 -26.746 -11.399 30.154 Atomic orbital electron populations 1.21684 0.91240 1.03595 1.03134 1.21639 0.98269 1.00355 0.96209 0.92601 1.21765 0.80154 1.01663 0.97980 1.87493 1.21385 1.48367 1.74119 1.23028 1.00202 0.88668 0.90713 1.22725 0.91567 0.93442 0.94912 1.46965 1.07721 1.26741 1.53287 1.16202 0.84657 0.80513 0.79011 1.90882 1.16477 1.77540 1.64901 1.42361 1.09753 1.20550 1.58909 1.17221 0.98369 0.86389 0.98563 1.20893 0.96375 0.97874 0.94419 1.20314 1.02457 0.90483 1.06229 1.19560 0.93718 0.87451 0.92876 1.83531 1.55962 1.14794 1.60917 1.20741 1.11320 0.82656 1.32680 0.89617 1.25216 1.01536 0.93099 0.98823 1.69724 1.42033 0.98813 1.45762 0.85275 0.78522 0.78531 0.78769 1.19384 1.19073 1.18799 1.21115 0.98905 0.99844 1.03223 1.20746 1.01072 0.89416 0.99415 1.21924 0.78607 1.03153 0.98096 0.91381 0.91890 0.90389 0.90412 0.89680 0.87514 0.89602 0.91623 0.89106 0.74354 0.84652 0.85454 0.90603 0.85944 0.83187 0.87177 0.89370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 9.15 71.98 0.66 -0.16 16 2 C -0.14 -1.59 2.87 -11.82 -0.03 -1.63 16 3 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 4 C 0.06 0.68 5.26 70.32 0.37 1.05 16 5 O -0.40 -7.02 10.22 -143.83 -1.47 -8.49 16 6 C 0.05 0.60 6.49 72.42 0.47 1.07 16 7 C 0.10 1.63 6.53 86.50 0.56 2.19 16 8 N -0.61 -11.88 2.55 -834.24 -2.13 -14.01 16 9 C 0.69 19.93 8.04 179.05 1.44 21.37 16 10 O -0.62 -23.36 13.16 -3.98 -0.05 -23.42 16 11 N -0.66 -17.47 5.17 -317.04 -1.64 -19.11 16 12 C 0.09 3.05 6.29 38.16 0.24 3.29 16 13 C -0.08 -2.91 8.68 22.38 0.19 -2.71 16 14 C -0.18 -7.52 9.99 22.38 0.22 -7.30 16 15 C 0.11 5.52 6.65 22.59 0.15 5.67 16 16 O -0.24 -13.63 8.58 -22.86 -0.20 -13.82 16 17 C -0.40 -23.64 9.94 67.91 0.68 -22.96 16 18 H 0.09 5.25 5.43 -2.91 -0.02 5.23 16 19 C 0.01 0.68 5.49 84.83 0.47 1.15 16 20 N -0.92 -55.45 13.96 21.61 0.30 -55.15 16 21 Si 0.97 46.44 28.62 68.60 1.96 48.40 16 22 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 24 H -0.26 -12.71 7.11 99.48 0.71 -12.00 16 25 C -0.21 -9.30 9.16 22.37 0.20 -9.10 16 26 C -0.09 -3.01 9.96 22.38 0.22 -2.79 16 27 C 0.11 1.15 4.44 87.40 0.39 1.54 16 28 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.08 0.19 8.14 -2.39 -0.02 0.18 16 31 H 0.08 0.44 7.27 -2.39 -0.02 0.42 16 32 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.09 0.47 7.20 -2.39 -0.02 0.45 16 35 H 0.07 1.56 7.07 -2.39 -0.02 1.55 16 36 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.42 7.73 6.46 -92.71 -0.60 7.13 16 38 H 0.14 5.17 6.28 -2.91 -0.02 5.15 16 39 H 0.13 5.16 8.06 -2.91 -0.02 5.14 16 40 H 0.28 15.70 8.31 -92.71 -0.77 14.93 16 41 H 0.12 5.74 5.63 -2.91 -0.02 5.73 16 42 H 0.15 4.05 8.06 -2.91 -0.02 4.03 16 43 H 0.11 0.60 8.10 -2.38 -0.02 0.58 16 44 H 0.09 0.81 6.26 -2.39 -0.01 0.80 16 Total: -1.00 -77.37 353.66 3.44 -73.93 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: 0.43 Total: 21.00 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: 6.23 Total: -9.32 kcal Atomic # 7 Polarization: -84.80 SS G_CDS: -3.47 Total: -88.27 kcal Atomic # 8 Polarization: -44.01 SS G_CDS: -1.72 Total: -45.73 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 1.96 Total: 48.40 kcal Total: -77.37 3.44 -73.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650047030.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.970 kcal (2) G-P(sol) polarization free energy of solvation -77.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds