Wall clock time and date at job start Tue Mar 31 2020 12:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.66671 * 2 1 4 4 C 1.54699 * 110.89933 * 123.31506 * 2 1 3 5 5 C 1.51682 * 101.91901 * 143.69025 * 4 2 1 6 6 C 1.37309 * 132.06642 * 164.36771 * 5 4 2 7 7 C 1.39807 * 119.86180 * 180.91148 * 6 5 4 8 8 C 1.47600 * 120.26675 * 179.97438 * 7 6 5 9 9 O 1.21579 * 120.00157 * 0.02605 * 8 7 6 10 10 N 1.34782 * 119.99932 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99882 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47010 * 180.02562 * 11 10 8 13 13 H 1.08997 * 109.47177 * 59.99874 * 12 11 10 14 14 O 1.42901 * 109.47065 * 300.00271 * 12 11 10 15 15 C 1.53002 * 109.47365 * 180.02562 * 12 11 10 16 16 N 1.46495 * 109.47187 * 184.99791 * 15 12 11 17 17 C 1.36938 * 119.99769 * 179.97438 * 16 15 12 18 18 H 1.08000 * 119.99993 * 0.02562 * 17 16 15 19 19 C 1.38810 * 120.00367 * 180.02562 * 17 16 15 20 20 N 1.31623 * 119.99425 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00522 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.47017 * 89.99971 * 21 19 17 23 23 H 1.48501 * 109.47209 * 210.00104 * 21 19 17 24 24 H 1.48500 * 109.46880 * 330.00141 * 21 19 17 25 25 C 1.39752 * 119.46871 * 0.02562 * 7 6 5 26 26 C 1.37471 * 120.20063 * 359.80900 * 25 7 6 27 27 C 1.39185 * 107.00344 * 344.85391 * 5 4 2 28 28 O 1.36004 * 111.15554 * 358.52424 * 27 5 4 29 29 H 1.08998 * 109.47251 * 181.75428 * 1 2 3 30 30 H 1.09000 * 109.47210 * 301.75694 * 1 2 3 31 31 H 1.09002 * 109.47004 * 61.75259 * 1 2 3 32 32 H 1.09000 * 110.94154 * 25.53934 * 4 2 1 33 33 H 1.08996 * 110.94228 * 261.84692 * 4 2 1 34 34 H 1.08001 * 120.06867 * 0.90812 * 6 5 4 35 35 H 0.97001 * 119.99664 * 0.02562 * 10 8 7 36 36 H 1.08998 * 109.47496 * 300.00810 * 11 10 8 37 37 H 1.08999 * 109.46447 * 60.00880 * 11 10 8 38 38 H 0.96699 * 114.00313 * 299.99634 * 14 12 11 39 39 H 1.09001 * 109.46872 * 305.00559 * 15 12 11 40 40 H 1.09006 * 109.46879 * 64.99819 * 15 12 11 41 41 H 0.96991 * 120.00113 * 0.02562 * 16 15 12 42 42 H 0.97007 * 119.99723 * 179.97438 * 20 19 17 43 43 H 1.07999 * 119.90709 * 179.78891 * 25 7 6 44 44 H 1.08001 * 119.79074 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0198 0.0000 4 6 2.0818 -0.7938 1.2077 5 6 3.3108 -1.4546 0.6131 6 6 4.3982 -2.0631 1.1900 7 6 5.4154 -2.5812 0.3829 8 6 6.5885 -3.2366 0.9936 9 8 6.6728 -3.3279 2.2030 10 7 7.5664 -3.7338 0.2105 11 6 8.7310 -4.3837 0.8166 12 6 9.6830 -4.8544 -0.2847 13 1 10.0105 -3.9971 -0.8727 14 8 9.0068 -5.7839 -1.1337 15 6 10.8991 -5.5338 0.3482 16 7 11.8657 -5.8776 -0.6975 17 6 13.0407 -6.4980 -0.3664 18 1 13.2546 -6.7341 0.6655 19 6 13.9569 -6.8234 -1.3571 20 7 13.6964 -6.5352 -2.6147 21 14 15.5595 -7.6703 -0.9057 22 1 15.3694 -9.1427 -0.9447 23 1 16.6151 -7.2816 -1.8752 24 1 15.9681 -7.2600 0.4618 25 6 5.3132 -2.4727 -1.0066 26 6 4.2187 -1.8646 -1.5741 27 6 3.1996 -1.3508 -0.7704 28 8 2.0392 -0.7363 -1.1248 29 1 -0.3634 -1.0272 0.0315 30 1 -0.3633 0.5409 0.8738 31 1 -0.3633 0.4864 -0.9053 32 1 1.3627 -1.5404 1.5446 33 1 2.3557 -0.1233 2.0223 34 1 4.4675 -2.1411 2.2649 35 1 7.4993 -3.6605 -0.7544 36 1 9.2469 -3.6746 1.4640 37 1 8.4033 -5.2409 1.4049 38 1 8.6870 -6.5736 -0.6764 39 1 11.3634 -4.8547 1.0633 40 1 10.5817 -6.4411 0.8623 41 1 11.6737 -5.6652 -1.6242 42 1 14.3368 -6.7622 -3.3070 43 1 6.0965 -2.8675 -1.6366 44 1 4.1462 -1.7848 -2.6487 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699063455.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:10 Heat of formation + Delta-G solvation = -110.475542 kcal Electronic energy + Delta-G solvation = -25524.537484 eV Core-core repulsion = 21634.256701 eV Total energy + Delta-G solvation = -3890.280783 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.29649 -40.94194 -39.04778 -38.11010 -36.09912 -35.38306 -34.21253 -33.22201 -32.31848 -31.50542 -30.40372 -27.83178 -26.93781 -25.03679 -23.85912 -23.02930 -22.75562 -22.68932 -21.33108 -19.30734 -18.89037 -18.60024 -18.00220 -17.36945 -17.20366 -16.71756 -16.47882 -16.36053 -15.88737 -15.50632 -15.28314 -15.20525 -14.82956 -14.74250 -14.29751 -14.24105 -14.11101 -13.95038 -13.82941 -13.41293 -13.39165 -13.21553 -12.96290 -12.93599 -12.74976 -12.24110 -12.15552 -11.97353 -11.87179 -11.80579 -11.70811 -11.28385 -10.98584 -10.87418 -10.22436 -10.04505 -9.26443 -9.00585 -7.94679 -5.24035 -0.26473 0.22188 1.48242 1.49887 1.58370 1.70556 2.01769 2.15857 2.56562 2.71537 3.34402 3.36994 3.46009 3.52092 3.58029 3.68968 3.79085 3.99181 4.02202 4.08793 4.12994 4.20462 4.22887 4.40292 4.48796 4.62150 4.64118 4.69984 4.73582 4.83271 4.88352 4.94765 5.04293 5.08007 5.20349 5.21330 5.22333 5.24652 5.30296 5.45375 5.48873 6.06010 6.26543 6.46218 6.80047 7.12710 7.33814 8.09072 8.32229 9.28454 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.041755 B = 0.001845 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.420345 B =15175.743469 C =15693.428392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.069 3.931 3 H 0.100 0.900 4 C -0.103 4.103 5 C -0.192 4.192 6 C -0.019 4.019 7 C -0.180 4.180 8 C 0.562 3.438 9 O -0.583 6.583 10 N -0.706 5.706 11 C 0.102 3.898 12 C 0.108 3.892 13 H 0.102 0.898 14 O -0.562 6.562 15 C 0.122 3.878 16 N -0.739 5.739 17 C -0.250 4.250 18 H 0.076 0.924 19 C -0.075 4.075 20 N -0.967 5.967 21 Si 0.975 3.025 22 H -0.287 1.287 23 H -0.295 1.295 24 H -0.269 1.269 25 C -0.041 4.041 26 C -0.150 4.150 27 C 0.124 3.876 28 O -0.313 6.313 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.133 0.867 35 H 0.414 0.586 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.385 0.615 39 H 0.034 0.966 40 H 0.031 0.969 41 H 0.377 0.623 42 H 0.251 0.749 43 H 0.158 0.842 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.012 14.572 5.611 32.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.014 3.986 3 H 0.118 0.882 4 C -0.140 4.140 5 C -0.193 4.193 6 C -0.039 4.039 7 C -0.183 4.183 8 C 0.351 3.649 9 O -0.464 6.464 10 N -0.358 5.358 11 C -0.023 4.023 12 C 0.048 3.952 13 H 0.120 0.880 14 O -0.369 6.369 15 C -0.005 4.005 16 N -0.382 5.382 17 C -0.381 4.381 18 H 0.094 0.906 19 C -0.267 4.267 20 N -0.618 5.618 21 Si 0.803 3.197 22 H -0.214 1.214 23 H -0.222 1.222 24 H -0.194 1.194 25 C -0.060 4.060 26 C -0.168 4.168 27 C 0.077 3.923 28 O -0.227 6.227 29 H 0.082 0.918 30 H 0.121 0.879 31 H 0.090 0.910 32 H 0.120 0.880 33 H 0.129 0.871 34 H 0.151 0.849 35 H 0.252 0.748 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.234 0.766 39 H 0.052 0.948 40 H 0.049 0.951 41 H 0.209 0.791 42 H 0.060 0.940 43 H 0.175 0.825 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -28.807 14.885 5.927 32.963 hybrid contribution 1.025 -0.880 -0.106 1.355 sum -27.782 14.005 5.822 31.652 Atomic orbital electron populations 1.21917 0.90212 1.03726 1.04474 1.23745 0.97230 0.95605 0.82002 0.88240 1.21991 0.93296 0.99754 0.98923 1.20958 0.98495 1.05674 0.94194 1.20371 0.90380 0.92632 1.00470 1.19687 0.96806 1.07291 0.94535 1.18365 0.82722 0.77742 0.86084 1.90750 1.79891 1.60199 1.15596 1.45692 1.20511 1.58562 1.11080 1.21891 0.86353 0.98306 0.95751 1.22094 0.89717 0.92238 0.91102 0.88013 1.86551 1.76426 1.34679 1.39213 1.21410 0.90026 0.97389 0.91704 1.42404 1.18244 1.71711 1.05873 1.19653 0.95275 1.29829 0.93381 0.90572 1.25588 1.02463 1.03328 0.95332 1.69836 1.37552 1.54369 1.00010 0.85127 0.79198 0.78069 0.77260 1.21394 1.22168 1.19419 1.21251 0.97222 0.94482 0.93013 1.20452 0.91904 1.03292 1.01186 1.20104 0.86625 0.92367 0.93194 1.86830 1.33553 1.62648 1.39714 0.91780 0.87898 0.91048 0.87959 0.87092 0.84898 0.74802 0.90425 0.90649 0.76558 0.94825 0.95068 0.79111 0.94000 0.82501 0.82832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.61 71.98 0.69 -0.19 16 2 C 0.07 0.72 4.24 31.17 0.13 0.85 16 3 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 4 C -0.10 -1.12 6.65 30.74 0.20 -0.92 16 5 C -0.19 -3.40 6.26 -19.54 -0.12 -3.52 16 6 C -0.02 -0.41 9.58 22.43 0.21 -0.19 16 7 C -0.18 -3.91 5.88 -20.06 -0.12 -4.03 16 8 C 0.56 14.69 7.77 86.71 0.67 15.36 16 9 O -0.58 -19.39 16.36 -3.97 -0.06 -19.46 16 10 N -0.71 -16.06 5.40 -466.21 -2.52 -18.58 16 11 C 0.10 2.54 5.34 86.38 0.46 3.00 16 12 C 0.11 3.15 3.09 30.59 0.09 3.25 16 13 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 14 O -0.56 -16.56 13.03 -148.98 -1.94 -18.50 16 15 C 0.12 4.57 5.90 86.38 0.51 5.08 16 16 N -0.74 -37.07 5.55 -343.45 -1.91 -38.97 16 17 C -0.25 -13.91 9.99 84.03 0.84 -13.07 16 18 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 19 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 20 N -0.97 -59.44 13.06 21.65 0.28 -59.16 16 21 Si 0.97 46.11 29.55 68.60 2.03 48.14 16 22 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 23 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 24 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 25 C -0.04 -0.70 9.52 22.45 0.21 -0.49 16 26 C -0.15 -2.50 10.05 22.41 0.23 -2.28 16 27 C 0.12 2.27 7.04 22.82 0.16 2.43 16 28 O -0.31 -5.39 10.80 -93.60 -1.01 -6.40 16 29 H 0.06 0.46 8.12 -2.39 -0.02 0.44 16 30 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.10 0.94 7.91 -2.39 -0.02 0.92 16 33 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.13 2.82 7.66 -2.91 -0.02 2.80 16 35 H 0.41 7.82 6.38 -92.71 -0.59 7.23 16 36 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.39 9.29 9.04 -74.06 -0.67 8.62 16 39 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 41 H 0.38 20.41 7.67 -92.71 -0.71 19.70 16 42 H 0.25 14.95 8.31 -92.70 -0.77 14.18 16 43 H 0.16 1.98 6.40 -2.91 -0.02 1.96 16 44 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -74.13 372.14 -1.41 -75.53 By element: Atomic # 1 Polarization: 36.86 SS G_CDS: -0.92 Total: 35.94 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: 4.65 Total: 1.46 kcal Atomic # 7 Polarization: -112.57 SS G_CDS: -4.14 Total: -116.71 kcal Atomic # 8 Polarization: -41.35 SS G_CDS: -3.02 Total: -44.37 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -74.13 -1.41 -75.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699063455.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.942 kcal (2) G-P(sol) polarization free energy of solvation -74.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds