Wall clock time and date at job start Tue Mar 31 2020 12:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 110.66362 * 2 1 4 4 C 1.54702 * 110.74128 * 236.80166 * 2 1 3 5 5 C 1.51676 * 101.90213 * 216.13670 * 4 2 1 6 6 C 1.37308 * 132.06659 * 195.86612 * 5 4 2 7 7 C 1.39806 * 119.86151 * 179.70215 * 6 5 4 8 8 C 1.47608 * 120.26620 * 179.76892 * 7 6 5 9 9 O 1.21585 * 120.00069 * 359.72010 * 8 7 6 10 10 N 1.34779 * 119.99907 * 179.72332 * 8 7 6 11 11 C 1.46494 * 119.99921 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.47283 * 179.97438 * 11 10 8 13 13 H 1.08999 * 109.47269 * 305.00317 * 12 11 10 14 14 O 1.42903 * 109.46459 * 65.00211 * 12 11 10 15 15 C 1.53001 * 109.47376 * 185.00021 * 12 11 10 16 16 N 1.46497 * 109.46900 * 180.02562 * 15 12 11 17 17 C 1.36940 * 119.99699 * 180.02562 * 16 15 12 18 18 H 1.08003 * 120.00008 * 0.02562 * 17 16 15 19 19 C 1.38812 * 119.99902 * 179.97438 * 17 16 15 20 20 N 1.31618 * 120.00041 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99798 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47427 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.47212 * 120.00446 * 21 19 17 24 24 H 1.48501 * 109.46932 * 239.99751 * 21 19 17 25 25 C 1.39757 * 119.46637 * 359.49214 * 7 6 5 26 26 C 1.37469 * 120.20217 * 0.39303 * 25 7 6 27 27 C 1.39187 * 106.99832 * 15.38907 * 5 4 2 28 28 O 1.35995 * 111.17084 * 1.11700 * 27 5 4 29 29 H 1.08999 * 109.46951 * 183.20198 * 1 2 3 30 30 H 1.09000 * 109.47045 * 303.19560 * 1 2 3 31 31 H 1.08995 * 109.47225 * 63.19865 * 1 2 3 32 32 H 1.09001 * 110.94485 * 97.98828 * 4 2 1 33 33 H 1.08999 * 110.94736 * 334.29206 * 4 2 1 34 34 H 1.08003 * 120.06896 * 359.46094 * 6 5 4 35 35 H 0.96999 * 119.99691 * 0.02562 * 10 8 7 36 36 H 1.09005 * 109.47040 * 60.00167 * 11 10 8 37 37 H 1.08999 * 109.47079 * 299.99869 * 11 10 8 38 38 H 0.96700 * 114.00311 * 60.00313 * 14 12 11 39 39 H 1.08999 * 109.47164 * 300.00361 * 15 12 11 40 40 H 1.08997 * 109.47124 * 60.00063 * 15 12 11 41 41 H 0.96996 * 120.00310 * 359.97438 * 16 15 12 42 42 H 0.97001 * 119.99921 * 180.02562 * 20 19 17 43 43 H 1.07999 * 119.89463 * 180.36522 * 25 7 6 44 44 H 1.07998 * 119.78187 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0200 0.0000 4 6 2.0779 -0.7922 -1.2106 5 6 3.3096 -1.4523 -0.6210 6 6 4.3974 -2.0556 -1.2024 7 6 5.4113 -2.5859 -0.3990 8 6 6.5822 -3.2410 -1.0144 9 8 6.6653 -3.3255 -2.2245 10 7 7.5592 -3.7454 -0.2350 11 6 8.7209 -4.3960 -0.8457 12 6 9.6727 -4.8756 0.2521 13 1 9.9337 -4.0375 0.8983 14 8 9.0332 -5.8926 1.0259 15 6 10.9426 -5.4426 -0.3856 16 7 11.8535 -5.9023 0.6656 17 6 13.0628 -6.4513 0.3317 18 1 13.3452 -6.5450 -0.7065 19 6 13.9262 -6.8863 1.3278 20 7 13.5828 -6.7707 2.5931 21 14 15.5761 -7.6345 0.8723 22 1 15.7220 -7.6493 -0.6054 23 1 16.6686 -6.8247 1.4691 24 1 15.6497 -9.0239 1.3915 25 6 5.3101 -2.4857 0.9913 26 6 4.2178 -1.8775 1.5631 27 6 3.2004 -1.3546 0.7632 28 8 2.0429 -0.7376 1.1222 29 1 -0.3633 -1.0261 0.0574 30 1 -0.3633 0.5626 0.8600 31 1 -0.3633 0.4633 -0.9172 32 1 2.3482 -0.1207 -2.0256 33 1 1.3581 -1.5390 -1.5456 34 1 4.4678 -2.1238 -2.2779 35 1 7.4926 -3.6784 0.7304 36 1 9.2386 -3.6851 -1.4898 37 1 8.3900 -5.2490 -1.4382 38 1 8.7726 -6.6707 0.5143 39 1 10.6816 -6.2807 -1.0318 40 1 11.4303 -4.6669 -0.9759 41 1 11.6005 -5.8171 1.5981 42 1 14.1863 -7.0744 3.2891 43 1 6.0921 -2.8878 1.6183 44 1 4.1464 -1.8042 2.6382 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699063456.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:14 Heat of formation + Delta-G solvation = -84.025394 kcal Electronic energy + Delta-G solvation = -25519.478532 eV Core-core repulsion = 21630.344714 eV Total energy + Delta-G solvation = -3889.133819 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.64270 -39.94550 -37.87077 -37.21218 -34.49640 -34.01357 -33.65213 -31.76856 -31.25373 -30.69411 -29.04754 -27.11091 -25.53057 -23.76637 -22.43861 -22.32985 -22.19188 -21.42310 -20.33770 -18.08456 -17.97920 -17.17137 -17.15380 -16.37045 -16.01259 -15.69956 -15.59555 -14.80203 -14.59372 -14.47998 -14.33284 -14.07673 -13.74897 -13.69339 -13.45362 -13.37248 -13.00472 -12.94131 -12.80124 -12.65765 -12.45285 -12.32172 -11.86775 -11.76857 -11.26679 -11.09633 -10.96470 -10.84220 -10.63334 -10.18575 -10.12090 -9.81873 -9.51166 -9.34375 -9.16874 -8.91683 -8.53939 -6.94581 -5.77043 -3.06706 0.52841 0.93309 2.56228 2.76290 3.03723 3.43003 3.48625 3.50948 3.52864 3.92500 4.00881 4.36299 4.43949 4.51417 4.58080 4.61151 4.70250 4.72021 4.82210 4.88463 5.00345 5.08672 5.14382 5.24056 5.30860 5.36861 5.52511 5.54989 5.59695 5.60800 5.73649 5.83166 5.92847 5.93677 5.98124 6.10306 6.18814 6.36276 6.50184 6.66449 6.71589 7.42318 7.68402 7.93255 8.12600 8.41156 9.53000 10.09538 10.45446 11.45322 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.041568 B = 0.001844 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.439285 B =15183.356628 C =15696.949714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.075 3.925 3 H 0.089 0.911 4 C -0.105 4.105 5 C -0.188 4.188 6 C -0.009 4.009 7 C -0.163 4.163 8 C 0.561 3.439 9 O -0.544 6.544 10 N -0.716 5.716 11 C 0.090 3.910 12 C 0.089 3.911 13 H 0.105 0.895 14 O -0.552 6.552 15 C 0.127 3.873 16 N -0.725 5.725 17 C -0.244 4.244 18 H 0.071 0.929 19 C -0.012 4.012 20 N -0.929 5.929 21 Si 0.908 3.092 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C -0.047 4.047 26 C -0.145 4.145 27 C 0.132 3.868 28 O -0.299 6.299 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.138 0.862 35 H 0.404 0.596 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.374 0.626 39 H 0.023 0.977 40 H 0.029 0.971 41 H 0.389 0.611 42 H 0.255 0.745 43 H 0.139 0.861 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.622 14.479 -5.172 31.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.020 3.980 3 H 0.107 0.893 4 C -0.142 4.142 5 C -0.188 4.188 6 C -0.028 4.028 7 C -0.166 4.166 8 C 0.348 3.652 9 O -0.422 6.422 10 N -0.368 5.368 11 C -0.034 4.034 12 C 0.029 3.971 13 H 0.122 0.878 14 O -0.357 6.357 15 C -0.002 4.002 16 N -0.370 5.370 17 C -0.375 4.375 18 H 0.089 0.911 19 C -0.209 4.209 20 N -0.578 5.578 21 Si 0.739 3.261 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C -0.065 4.065 26 C -0.164 4.164 27 C 0.086 3.914 28 O -0.213 6.213 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.156 0.844 35 H 0.240 0.760 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.221 0.779 39 H 0.041 0.959 40 H 0.047 0.953 41 H 0.224 0.776 42 H 0.065 0.935 43 H 0.157 0.843 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -27.422 14.782 -5.444 31.625 hybrid contribution 0.825 -0.714 -0.022 1.091 sum -26.597 14.068 -5.466 30.581 Atomic orbital electron populations 1.21892 0.91819 1.03690 1.03319 1.23449 0.95954 0.95498 0.83139 0.89282 1.21882 0.94438 0.99428 0.98444 1.20688 0.98023 1.06270 0.93867 1.20332 0.89848 0.91975 1.00632 1.19774 0.97272 1.05961 0.93601 1.18065 0.82253 0.78255 0.86579 1.90777 1.78910 1.58645 1.13917 1.45832 1.21411 1.58997 1.10567 1.22143 0.86422 0.98182 0.96667 1.22396 0.91097 0.91360 0.92279 0.87769 1.86570 1.79724 1.30323 1.39105 1.21192 0.89629 0.96802 0.92599 1.42231 1.16814 1.73722 1.04283 1.19273 0.93205 1.32432 0.92569 0.91142 1.24761 0.98903 1.01978 0.95226 1.69688 1.36943 1.52745 0.98393 0.86109 0.83944 0.78621 0.77448 1.20545 1.21835 1.21823 1.21089 0.96707 0.95045 0.93694 1.20189 0.92261 1.03705 1.00218 1.19837 0.86342 0.92434 0.92788 1.86827 1.34042 1.62288 1.38119 0.91268 0.91184 0.90086 0.88756 0.88820 0.84372 0.76012 0.90261 0.90875 0.77864 0.95900 0.95340 0.77645 0.93527 0.84349 0.84580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 9.59 37.16 0.36 -0.25 16 2 C 0.08 0.46 4.25 -25.84 -0.11 0.35 16 3 H 0.09 0.45 8.14 -51.92 -0.42 0.03 16 4 C -0.10 -0.66 6.65 -26.51 -0.18 -0.83 16 5 C -0.19 -1.74 6.26 -104.13 -0.65 -2.39 16 6 C -0.01 -0.09 9.58 -39.33 -0.38 -0.47 16 7 C -0.16 -1.81 5.88 -104.92 -0.62 -2.42 16 8 C 0.56 7.43 7.77 -12.44 -0.10 7.34 16 9 O -0.54 -8.99 16.36 5.29 0.09 -8.91 16 10 N -0.72 -8.51 5.45 -61.33 -0.33 -8.84 16 11 C 0.09 1.18 5.31 -4.04 -0.02 1.15 16 12 C 0.09 1.33 3.09 -26.73 -0.08 1.25 16 13 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 14 O -0.55 -8.61 13.03 -35.23 -0.46 -9.07 16 15 C 0.13 2.43 5.92 -4.04 -0.02 2.40 16 16 N -0.73 -18.25 5.49 -59.91 -0.33 -18.57 16 17 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 18 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 20 N -0.93 -28.29 13.06 55.49 0.72 -27.57 16 21 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 C -0.05 -0.43 9.52 -39.29 -0.37 -0.80 16 26 C -0.15 -1.31 10.05 -39.36 -0.40 -1.70 16 27 C 0.13 1.29 7.04 -38.73 -0.27 1.01 16 28 O -0.30 -2.77 10.81 -19.72 -0.21 -2.98 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.51 7.93 -51.93 -0.41 0.10 16 34 H 0.14 1.43 7.66 -52.48 -0.40 1.03 16 35 H 0.40 4.09 6.51 -40.82 -0.27 3.82 16 36 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.37 4.91 9.05 45.56 0.41 5.32 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.39 10.47 7.54 -40.82 -0.31 10.17 16 42 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.14 0.99 6.40 -52.49 -0.34 0.65 16 44 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 372.17 15.07 5.61 5.61 Total: -1.00 -34.80 372.17 -8.53 -43.33 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -5.51 Total: 12.38 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -3.09 Total: -2.80 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: 0.06 Total: -54.98 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.59 Total: -20.96 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.80 -8.53 -43.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699063456.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.695 kcal (2) G-P(sol) polarization free energy of solvation -34.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds