Wall clock time and date at job start Tue Mar 31 2020 12:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 110.66362 * 2 1 4 4 C 1.54702 * 110.74128 * 236.80166 * 2 1 3 5 5 C 1.51676 * 101.90213 * 216.13670 * 4 2 1 6 6 C 1.37308 * 132.06659 * 195.86612 * 5 4 2 7 7 C 1.39806 * 119.86151 * 179.70215 * 6 5 4 8 8 C 1.47608 * 120.26620 * 179.76892 * 7 6 5 9 9 O 1.21585 * 120.00069 * 359.72010 * 8 7 6 10 10 N 1.34779 * 119.99907 * 179.72332 * 8 7 6 11 11 C 1.46494 * 119.99921 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.47283 * 179.97438 * 11 10 8 13 13 H 1.08999 * 109.47269 * 305.00317 * 12 11 10 14 14 O 1.42903 * 109.46459 * 65.00211 * 12 11 10 15 15 C 1.53001 * 109.47376 * 185.00021 * 12 11 10 16 16 N 1.46497 * 109.46900 * 180.02562 * 15 12 11 17 17 C 1.36940 * 119.99699 * 180.02562 * 16 15 12 18 18 H 1.08003 * 120.00008 * 0.02562 * 17 16 15 19 19 C 1.38812 * 119.99902 * 179.97438 * 17 16 15 20 20 N 1.31618 * 120.00041 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99798 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47427 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.47212 * 120.00446 * 21 19 17 24 24 H 1.48501 * 109.46932 * 239.99751 * 21 19 17 25 25 C 1.39757 * 119.46637 * 359.49214 * 7 6 5 26 26 C 1.37469 * 120.20217 * 0.39303 * 25 7 6 27 27 C 1.39187 * 106.99832 * 15.38907 * 5 4 2 28 28 O 1.35995 * 111.17084 * 1.11700 * 27 5 4 29 29 H 1.08999 * 109.46951 * 183.20198 * 1 2 3 30 30 H 1.09000 * 109.47045 * 303.19560 * 1 2 3 31 31 H 1.08995 * 109.47225 * 63.19865 * 1 2 3 32 32 H 1.09001 * 110.94485 * 97.98828 * 4 2 1 33 33 H 1.08999 * 110.94736 * 334.29206 * 4 2 1 34 34 H 1.08003 * 120.06896 * 359.46094 * 6 5 4 35 35 H 0.96999 * 119.99691 * 0.02562 * 10 8 7 36 36 H 1.09005 * 109.47040 * 60.00167 * 11 10 8 37 37 H 1.08999 * 109.47079 * 299.99869 * 11 10 8 38 38 H 0.96700 * 114.00311 * 60.00313 * 14 12 11 39 39 H 1.08999 * 109.47164 * 300.00361 * 15 12 11 40 40 H 1.08997 * 109.47124 * 60.00063 * 15 12 11 41 41 H 0.96996 * 120.00310 * 359.97438 * 16 15 12 42 42 H 0.97001 * 119.99921 * 180.02562 * 20 19 17 43 43 H 1.07999 * 119.89463 * 180.36522 * 25 7 6 44 44 H 1.07998 * 119.78187 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0200 0.0000 4 6 2.0779 -0.7922 -1.2106 5 6 3.3096 -1.4523 -0.6210 6 6 4.3974 -2.0556 -1.2024 7 6 5.4113 -2.5859 -0.3990 8 6 6.5822 -3.2410 -1.0144 9 8 6.6653 -3.3255 -2.2245 10 7 7.5592 -3.7454 -0.2350 11 6 8.7209 -4.3960 -0.8457 12 6 9.6727 -4.8756 0.2521 13 1 9.9337 -4.0375 0.8983 14 8 9.0332 -5.8926 1.0259 15 6 10.9426 -5.4426 -0.3856 16 7 11.8535 -5.9023 0.6656 17 6 13.0628 -6.4513 0.3317 18 1 13.3452 -6.5450 -0.7065 19 6 13.9262 -6.8863 1.3278 20 7 13.5828 -6.7707 2.5931 21 14 15.5761 -7.6345 0.8723 22 1 15.7220 -7.6493 -0.6054 23 1 16.6686 -6.8247 1.4691 24 1 15.6497 -9.0239 1.3915 25 6 5.3101 -2.4857 0.9913 26 6 4.2178 -1.8775 1.5631 27 6 3.2004 -1.3546 0.7632 28 8 2.0429 -0.7376 1.1222 29 1 -0.3633 -1.0261 0.0574 30 1 -0.3633 0.5626 0.8600 31 1 -0.3633 0.4633 -0.9172 32 1 2.3482 -0.1207 -2.0256 33 1 1.3581 -1.5390 -1.5456 34 1 4.4678 -2.1238 -2.2779 35 1 7.4926 -3.6784 0.7304 36 1 9.2386 -3.6851 -1.4898 37 1 8.3900 -5.2490 -1.4382 38 1 8.7726 -6.6707 0.5143 39 1 10.6816 -6.2807 -1.0318 40 1 11.4303 -4.6669 -0.9759 41 1 11.6005 -5.8171 1.5981 42 1 14.1863 -7.0744 3.2891 43 1 6.0921 -2.8878 1.6183 44 1 4.1464 -1.8042 2.6382 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699063456.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:13 Heat of formation + Delta-G solvation = -110.523051 kcal Electronic energy + Delta-G solvation = -25520.627557 eV Core-core repulsion = 21630.344714 eV Total energy + Delta-G solvation = -3890.282843 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.29733 -40.94003 -39.04602 -38.11116 -36.08550 -35.39860 -34.21795 -33.21039 -32.31896 -31.50769 -30.40330 -27.82949 -26.93912 -25.04013 -23.86195 -23.02937 -22.75415 -22.68750 -21.32902 -19.30800 -18.88856 -18.60284 -18.00200 -17.36657 -17.21474 -16.69742 -16.47623 -16.36327 -15.89834 -15.51007 -15.28000 -15.20308 -14.83054 -14.73764 -14.30182 -14.23746 -14.11243 -13.95031 -13.83601 -13.41295 -13.39305 -13.21697 -12.96218 -12.93606 -12.78280 -12.23953 -12.11774 -11.95708 -11.86877 -11.80463 -11.70730 -11.29048 -10.99779 -10.86472 -10.22599 -10.04608 -9.26322 -9.00336 -7.94706 -5.23973 -0.26473 0.22148 1.48357 1.48884 1.59098 1.70523 2.01934 2.15284 2.56403 2.71486 3.34444 3.37042 3.45296 3.51576 3.58972 3.68758 3.78948 3.99356 4.03803 4.08719 4.13066 4.20051 4.22422 4.40559 4.48857 4.62222 4.63738 4.69901 4.73274 4.83588 4.88016 4.94526 5.04362 5.07998 5.19933 5.21117 5.22400 5.24647 5.30955 5.45308 5.49197 6.05999 6.26687 6.45790 6.80040 7.12435 7.34064 8.09518 8.32817 9.28634 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.041568 B = 0.001844 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.439285 B =15183.356628 C =15696.949714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.069 3.931 3 H 0.100 0.900 4 C -0.103 4.103 5 C -0.193 4.193 6 C -0.019 4.019 7 C -0.180 4.180 8 C 0.562 3.438 9 O -0.583 6.583 10 N -0.707 5.707 11 C 0.102 3.898 12 C 0.108 3.892 13 H 0.103 0.897 14 O -0.562 6.562 15 C 0.121 3.879 16 N -0.739 5.739 17 C -0.248 4.248 18 H 0.076 0.924 19 C -0.075 4.075 20 N -0.967 5.967 21 Si 0.974 3.026 22 H -0.266 1.266 23 H -0.293 1.293 24 H -0.293 1.293 25 C -0.041 4.041 26 C -0.150 4.150 27 C 0.124 3.876 28 O -0.313 6.313 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.102 0.898 34 H 0.133 0.867 35 H 0.414 0.586 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.385 0.615 39 H 0.031 0.969 40 H 0.034 0.966 41 H 0.377 0.623 42 H 0.251 0.749 43 H 0.158 0.842 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.727 15.161 -5.633 32.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.014 3.986 3 H 0.118 0.882 4 C -0.140 4.140 5 C -0.194 4.194 6 C -0.038 4.038 7 C -0.183 4.183 8 C 0.351 3.649 9 O -0.464 6.464 10 N -0.359 5.359 11 C -0.023 4.023 12 C 0.048 3.952 13 H 0.121 0.879 14 O -0.369 6.369 15 C -0.006 4.006 16 N -0.382 5.382 17 C -0.380 4.380 18 H 0.094 0.906 19 C -0.267 4.267 20 N -0.618 5.618 21 Si 0.803 3.197 22 H -0.190 1.190 23 H -0.220 1.220 24 H -0.220 1.220 25 C -0.060 4.060 26 C -0.168 4.168 27 C 0.077 3.923 28 O -0.227 6.227 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.121 0.879 32 H 0.129 0.871 33 H 0.120 0.880 34 H 0.151 0.849 35 H 0.252 0.748 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.234 0.766 39 H 0.049 0.951 40 H 0.052 0.948 41 H 0.210 0.790 42 H 0.060 0.940 43 H 0.175 0.825 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -28.556 15.474 -5.929 33.015 hybrid contribution 1.052 -0.871 0.095 1.369 sum -27.504 14.603 -5.834 31.682 Atomic orbital electron populations 1.21918 0.90214 1.03634 1.04570 1.23740 0.97209 0.95589 0.82042 0.88227 1.21995 0.93249 0.99790 0.98950 1.20956 0.98461 1.05772 0.94167 1.20372 0.90400 0.92592 1.00477 1.19691 0.96907 1.07216 0.94527 1.18368 0.82680 0.77747 0.86115 1.90752 1.79804 1.60337 1.15541 1.45706 1.20739 1.58394 1.11034 1.21904 0.86366 0.98277 0.95722 1.22102 0.89762 0.90966 0.92357 0.87872 1.86551 1.79541 1.30997 1.39795 1.21401 0.90474 0.97106 0.91616 1.42401 1.17071 1.73797 1.04945 1.19691 0.94187 1.31307 0.92804 0.90563 1.25583 1.02569 1.03341 0.95244 1.69840 1.38161 1.54455 0.99318 0.85066 0.79557 0.77269 0.77792 1.19032 1.22028 1.22039 1.21252 0.97218 0.94520 0.92979 1.20449 0.91972 1.03225 1.01200 1.20106 0.86647 0.92345 0.93163 1.86818 1.33773 1.62478 1.39663 0.91831 0.90988 0.87906 0.87079 0.87960 0.84899 0.74842 0.90363 0.90699 0.76597 0.95117 0.94810 0.79025 0.94009 0.82486 0.82827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.59 71.98 0.69 -0.19 16 2 C 0.07 0.72 4.25 31.17 0.13 0.85 16 3 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 4 C -0.10 -1.12 6.65 30.74 0.20 -0.92 16 5 C -0.19 -3.40 6.26 -19.54 -0.12 -3.52 16 6 C -0.02 -0.40 9.58 22.43 0.21 -0.19 16 7 C -0.18 -3.91 5.88 -20.06 -0.12 -4.03 16 8 C 0.56 14.68 7.77 86.72 0.67 15.35 16 9 O -0.58 -19.39 16.36 -3.98 -0.07 -19.45 16 10 N -0.71 -16.05 5.45 -466.20 -2.54 -18.59 16 11 C 0.10 2.55 5.31 86.38 0.46 3.00 16 12 C 0.11 3.14 3.09 30.60 0.09 3.23 16 13 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 14 O -0.56 -16.87 13.03 -148.98 -1.94 -18.81 16 15 C 0.12 4.54 5.92 86.38 0.51 5.05 16 16 N -0.74 -36.99 5.49 -343.46 -1.89 -38.88 16 17 C -0.25 -13.81 9.99 84.03 0.84 -12.97 16 18 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 19 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 20 N -0.97 -59.45 13.06 21.65 0.28 -59.17 16 21 Si 0.97 46.13 29.55 68.60 2.03 48.15 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 23 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 24 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 25 C -0.04 -0.70 9.52 22.46 0.21 -0.49 16 26 C -0.15 -2.50 10.05 22.41 0.23 -2.27 16 27 C 0.12 2.27 7.04 22.82 0.16 2.43 16 28 O -0.31 -5.39 10.81 -93.49 -1.01 -6.40 16 29 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 32 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.10 0.94 7.93 -2.39 -0.02 0.92 16 34 H 0.13 2.82 7.66 -2.91 -0.02 2.80 16 35 H 0.41 7.75 6.51 -92.71 -0.60 7.14 16 36 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 37 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.39 9.61 9.05 -74.06 -0.67 8.94 16 39 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.38 20.44 7.54 -92.71 -0.70 19.74 16 42 H 0.25 14.92 8.31 -92.71 -0.77 14.14 16 43 H 0.16 1.96 6.40 -2.91 -0.02 1.94 16 44 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -74.23 372.17 -1.41 -75.65 By element: Atomic # 1 Polarization: 36.92 SS G_CDS: -0.92 Total: 36.00 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: 4.65 Total: 1.50 kcal Atomic # 7 Polarization: -112.49 SS G_CDS: -4.15 Total: -116.64 kcal Atomic # 8 Polarization: -41.65 SS G_CDS: -3.02 Total: -44.66 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.15 kcal Total: -74.23 -1.41 -75.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699063456.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.876 kcal (2) G-P(sol) polarization free energy of solvation -74.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds