Wall clock time and date at job start Tue Mar 31 2020 13:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47009 * 2 1 4 4 C 1.53002 * 109.46774 * 240.00511 * 2 1 3 5 5 N 1.46503 * 109.46974 * 184.99920 * 4 2 1 6 6 C 1.34771 * 120.00248 * 179.97438 * 5 4 2 7 7 O 1.21590 * 120.00088 * 0.02562 * 6 5 4 8 8 C 1.47601 * 120.00399 * 180.02562 * 6 5 4 9 9 C 1.39703 * 120.04937 * 359.97438 * 8 6 5 10 10 C 1.37867 * 120.07476 * 179.97438 * 9 8 6 11 11 C 1.38771 * 119.91284 * 0.02562 * 10 9 8 12 12 C 1.39021 * 120.29957 * 0.02562 * 11 10 9 13 13 C 1.38055 * 120.21006 * 0.20093 * 12 11 10 14 14 O 1.36505 * 119.59260 * 179.97438 * 12 11 10 15 15 C 1.42901 * 115.93691 * 68.31327 * 14 12 11 16 16 C 1.52059 * 110.76749 * 275.60564 * 15 14 12 17 17 C 1.52064 * 112.36521 * 64.80039 * 16 15 14 18 18 O 1.36329 * 120.15321 * 179.97438 * 11 10 9 19 19 N 1.46499 * 109.47534 * 120.00097 * 2 1 3 20 20 C 1.36932 * 119.99964 * 275.00252 * 19 2 1 21 21 H 1.08004 * 120.00063 * 359.97438 * 20 19 2 22 22 C 1.38810 * 119.99772 * 179.97438 * 20 19 2 23 23 N 1.31622 * 120.00234 * 359.97438 * 22 20 19 24 24 Si 1.86809 * 120.00029 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46731 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46779 * 119.99799 * 24 22 20 27 27 H 1.48500 * 109.47269 * 240.00000 * 24 22 20 28 28 H 1.09000 * 109.46717 * 299.99845 * 1 2 3 29 29 H 1.08991 * 109.47336 * 59.99773 * 1 2 3 30 30 H 1.08999 * 109.47009 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47725 * 64.99732 * 4 2 1 32 32 H 1.09000 * 109.47020 * 304.99504 * 4 2 1 33 33 H 0.97003 * 119.99998 * 359.97438 * 5 4 2 34 34 H 1.08001 * 119.96086 * 359.97438 * 9 8 6 35 35 H 1.08001 * 120.04331 * 179.97438 * 10 9 8 36 36 H 1.08000 * 120.20068 * 179.79860 * 13 12 11 37 37 H 1.08997 * 109.21554 * 35.94039 * 15 14 12 38 38 H 1.08996 * 109.21486 * 155.27381 * 15 14 12 39 39 H 1.09000 * 108.90315 * 185.53762 * 16 15 14 40 40 H 1.09000 * 108.90596 * 304.15123 * 16 15 14 41 41 H 1.09002 * 109.21078 * 55.48388 * 17 16 15 42 42 H 1.09000 * 109.21451 * 174.80955 * 17 16 15 43 43 H 0.97000 * 119.99953 * 94.99826 * 19 2 1 44 44 H 0.97001 * 119.99715 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.1729 -1.4290 -2.1909 7 8 3.5683 -1.8851 -3.1421 8 6 5.6439 -1.5355 -2.1316 9 6 6.3398 -1.0113 -1.0394 10 6 7.7137 -1.1109 -0.9833 11 6 8.4052 -1.7323 -2.0136 12 6 7.7188 -2.2550 -3.1037 13 6 6.3435 -2.1559 -3.1711 14 8 8.4135 -2.8627 -4.1094 15 6 9.0395 -4.1032 -3.7757 16 6 10.3966 -3.8664 -3.1319 17 6 10.2854 -3.1538 -1.7932 18 8 9.7638 -1.8330 -1.9633 19 7 2.0184 -0.6906 1.1961 20 6 2.1492 -0.0075 2.3757 21 1 1.8927 1.0405 2.4241 22 6 2.6115 -0.6620 3.5091 23 7 2.9237 -1.9394 3.4502 24 14 2.7906 0.2700 5.1182 25 1 2.3766 1.6823 4.9208 26 1 1.9294 -0.3579 6.1523 27 1 4.2075 0.2261 5.5605 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.7516 -0.1583 -2.1370 32 1 1.6053 -1.7197 -1.2953 33 1 3.9824 -0.4621 -0.4321 34 1 5.8008 -0.5276 -0.2382 35 1 8.2512 -0.7052 -0.1389 36 1 5.8107 -2.5592 -4.0196 37 1 8.4031 -4.6506 -3.0804 38 1 9.1706 -4.6942 -4.6821 39 1 10.8882 -4.8274 -2.9805 40 1 11.0051 -3.2607 -3.8033 41 1 9.6226 -3.7204 -1.1391 42 1 11.2731 -3.0929 -1.3361 43 1 2.2491 -1.6318 1.1525 44 1 3.2471 -2.3966 4.2422 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752879806.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:19 Heat of formation + Delta-G solvation = -94.273553 kcal Electronic energy + Delta-G solvation = -26782.112677 eV Core-core repulsion = 22892.534465 eV Total energy + Delta-G solvation = -3889.578212 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.05301 -40.83935 -38.57987 -38.43401 -37.79606 -35.27268 -34.04275 -33.52277 -31.89152 -30.86538 -30.23500 -27.69701 -27.21035 -25.67861 -24.29955 -23.76908 -22.59976 -21.73945 -21.41354 -19.77611 -19.28418 -18.67221 -18.11099 -17.54661 -16.99679 -16.87796 -16.44333 -16.31038 -16.16595 -15.59891 -15.46000 -15.17943 -15.09641 -14.90794 -14.82008 -14.39055 -14.01170 -13.86155 -13.64541 -13.48901 -13.06946 -12.97120 -12.86762 -12.79700 -12.47870 -12.35801 -12.11270 -11.84446 -11.69536 -11.63521 -11.43927 -11.18500 -11.01402 -10.93466 -10.17252 -10.01383 -9.63736 -9.00466 -7.89184 -5.18249 -0.48376 0.04020 1.50976 1.53485 1.57154 1.61448 2.07501 2.38700 2.46287 2.59692 2.76495 3.45157 3.59875 3.65506 3.70376 3.84525 3.90166 3.93706 4.02426 4.14291 4.18607 4.20511 4.35419 4.36100 4.40963 4.62442 4.65301 4.74660 4.76478 4.83278 4.84606 4.97194 5.07213 5.08281 5.08876 5.10491 5.26579 5.29090 5.39701 5.59660 5.59885 6.02765 6.31369 6.41867 6.51214 7.12620 7.39199 8.10601 8.35691 9.33481 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013857 B = 0.003257 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.110344 B = 8595.665838 C =10153.071393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.159 3.841 3 H 0.062 0.938 4 C 0.122 3.878 5 N -0.702 5.702 6 C 0.556 3.444 7 O -0.580 6.580 8 C -0.135 4.135 9 C -0.067 4.067 10 C -0.120 4.120 11 C 0.089 3.911 12 C 0.050 3.950 13 C -0.065 4.065 14 O -0.335 6.335 15 C 0.046 3.954 16 C -0.181 4.181 17 C 0.048 3.952 18 O -0.334 6.334 19 N -0.732 5.732 20 C -0.232 4.232 21 H 0.078 0.922 22 C -0.068 4.068 23 N -0.965 5.965 24 Si 0.964 3.036 25 H -0.267 1.267 26 H -0.302 1.302 27 H -0.295 1.295 28 H 0.045 0.955 29 H 0.073 0.927 30 H 0.042 0.958 31 H 0.084 0.916 32 H 0.054 0.946 33 H 0.411 0.589 34 H 0.147 0.853 35 H 0.162 0.838 36 H 0.140 0.860 37 H 0.059 0.941 38 H 0.127 0.873 39 H 0.124 0.876 40 H 0.079 0.921 41 H 0.062 0.938 42 H 0.131 0.869 43 H 0.373 0.627 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.230 -1.960 -12.250 18.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.050 3.950 3 H 0.080 0.920 4 C -0.003 4.003 5 N -0.353 5.353 6 C 0.344 3.656 7 O -0.462 6.462 8 C -0.139 4.139 9 C -0.086 4.086 10 C -0.138 4.138 11 C 0.044 3.956 12 C 0.006 3.994 13 C -0.084 4.084 14 O -0.252 6.252 15 C -0.028 4.028 16 C -0.218 4.218 17 C -0.026 4.026 18 O -0.251 6.251 19 N -0.373 5.373 20 C -0.364 4.364 21 H 0.096 0.904 22 C -0.261 4.261 23 N -0.616 5.616 24 Si 0.794 3.206 25 H -0.191 1.191 26 H -0.230 1.230 27 H -0.222 1.222 28 H 0.064 0.936 29 H 0.092 0.908 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.072 0.928 33 H 0.249 0.751 34 H 0.165 0.835 35 H 0.180 0.820 36 H 0.158 0.842 37 H 0.078 0.922 38 H 0.145 0.855 39 H 0.142 0.858 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.148 0.852 43 H 0.205 0.795 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 13.940 -1.905 -12.981 19.143 hybrid contribution 0.066 -0.259 1.530 1.553 sum 14.007 -2.163 -11.451 18.220 Atomic orbital electron populations 1.22236 0.96700 1.01203 1.01433 1.20693 0.93662 0.95715 0.84903 0.91992 1.21662 0.79104 1.00781 0.98723 1.45890 1.08436 1.57996 1.22993 1.18331 0.87440 0.77657 0.82181 1.90724 1.70595 1.50097 1.34786 1.19780 0.92491 1.04427 0.97154 1.21444 0.94181 0.96393 0.96596 1.21245 0.93361 1.00982 0.98203 1.19517 0.84106 0.98681 0.93269 1.18998 0.90254 1.00086 0.90054 1.21101 0.91901 0.97213 0.98231 1.86355 1.67443 1.37639 1.33793 1.23005 0.93443 0.83316 1.03064 1.22456 0.98210 1.03769 0.97411 1.23036 1.01208 0.81036 0.97323 1.86322 1.15674 1.30756 1.92319 1.42625 1.78322 1.10348 1.06046 1.19593 1.34604 0.94158 0.88029 0.90382 1.25405 1.03135 0.96628 1.00887 1.69820 1.52609 1.10044 1.29123 0.85213 0.76608 0.78274 0.80458 1.19144 1.22976 1.22188 0.93565 0.90789 0.93889 0.89744 0.92753 0.75062 0.83507 0.82010 0.84191 0.92243 0.85526 0.85823 0.90225 0.91966 0.85171 0.79487 0.94252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.00 9.49 71.98 0.68 -4.31 16 2 C 0.16 5.60 3.05 44.99 0.14 5.74 16 3 H 0.06 2.12 8.08 -2.39 -0.02 2.11 16 4 C 0.12 3.99 5.23 86.38 0.45 4.44 16 5 N -0.70 -23.26 5.34 -466.21 -2.49 -25.75 16 6 C 0.56 19.24 7.76 86.72 0.67 19.91 16 7 O -0.58 -23.18 16.34 -4.00 -0.07 -23.25 16 8 C -0.14 -4.09 5.88 -20.07 -0.12 -4.21 16 9 C -0.07 -1.79 9.53 22.54 0.21 -1.58 16 10 C -0.12 -2.89 9.98 22.31 0.22 -2.67 16 11 C 0.09 2.26 5.74 22.59 0.13 2.39 16 12 C 0.05 1.36 5.72 22.41 0.13 1.48 16 13 C -0.06 -1.90 9.54 22.61 0.22 -1.69 16 14 O -0.34 -8.38 10.16 -84.62 -0.86 -9.24 16 15 C 0.05 0.74 6.51 71.67 0.47 1.21 16 16 C -0.18 -2.22 5.92 29.98 0.18 -2.04 16 17 C 0.05 0.72 6.51 71.67 0.47 1.18 16 18 O -0.33 -7.69 10.16 -82.56 -0.84 -8.53 16 19 N -0.73 -33.11 4.56 -322.94 -1.47 -34.59 16 20 C -0.23 -11.67 9.93 84.03 0.83 -10.84 16 21 H 0.08 3.78 7.83 -2.91 -0.02 3.76 16 22 C -0.07 -3.62 5.50 84.86 0.47 -3.15 16 23 N -0.97 -55.55 13.06 21.65 0.28 -55.27 16 24 Si 0.96 43.55 29.55 68.60 2.03 45.58 16 25 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 26 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 27 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 28 H 0.05 1.59 8.14 -2.39 -0.02 1.58 16 29 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.41 13.46 6.15 -92.71 -0.57 12.89 16 34 H 0.15 3.74 6.38 -2.91 -0.02 3.72 16 35 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 36 H 0.14 4.19 7.65 -2.91 -0.02 4.16 16 37 H 0.06 0.96 7.93 -2.39 -0.02 0.94 16 38 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.06 0.92 7.93 -2.39 -0.02 0.90 16 42 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.37 18.69 7.80 -92.71 -0.72 17.97 16 44 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -66.67 366.20 1.47 -65.19 By element: Atomic # 1 Polarization: 40.24 SS G_CDS: -0.26 Total: 39.98 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: 5.15 Total: 5.86 kcal Atomic # 7 Polarization: -111.93 SS G_CDS: -3.68 Total: -115.60 kcal Atomic # 8 Polarization: -39.25 SS G_CDS: -1.76 Total: -41.01 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -66.67 1.47 -65.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752879806.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.082 kcal (2) G-P(sol) polarization free energy of solvation -66.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds