Wall clock time and date at job start Tue Mar 31 2020 13:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 109.47417 * 2 1 4 4 C 1.53002 * 109.46745 * 120.00182 * 2 1 3 5 5 N 1.46503 * 109.46974 * 175.00051 * 4 2 1 6 6 C 1.34771 * 120.00248 * 179.97438 * 5 4 2 7 7 O 1.21590 * 120.00088 * 0.02562 * 6 5 4 8 8 C 1.47601 * 120.00399 * 180.02562 * 6 5 4 9 9 C 1.39703 * 120.04937 * 359.97438 * 8 6 5 10 10 C 1.37867 * 120.07476 * 179.97438 * 9 8 6 11 11 C 1.38771 * 119.91284 * 0.02562 * 10 9 8 12 12 C 1.39021 * 120.29957 * 0.02562 * 11 10 9 13 13 C 1.38055 * 120.21006 * 0.20093 * 12 11 10 14 14 O 1.36505 * 119.59260 * 179.97438 * 12 11 10 15 15 C 1.42901 * 115.93691 * 68.31327 * 14 12 11 16 16 C 1.52059 * 110.76749 * 275.60564 * 15 14 12 17 17 C 1.52064 * 112.36521 * 64.80039 * 16 15 14 18 18 O 1.36329 * 120.15321 * 179.97438 * 11 10 9 19 19 N 1.46498 * 109.47046 * 239.99779 * 2 1 3 20 20 C 1.36942 * 120.00085 * 85.00424 * 19 2 1 21 21 H 1.07995 * 119.99450 * 359.97438 * 20 19 2 22 22 C 1.38814 * 119.99937 * 179.97438 * 20 19 2 23 23 N 1.31617 * 120.00125 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99691 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47288 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.46771 * 120.00402 * 24 22 20 27 27 H 1.48503 * 109.46878 * 239.99946 * 24 22 20 28 28 H 1.09008 * 109.47357 * 60.00130 * 1 2 3 29 29 H 1.09002 * 109.47299 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47532 * 300.00327 * 1 2 3 31 31 H 1.08992 * 109.47725 * 54.99863 * 4 2 1 32 32 H 1.09000 * 109.47020 * 294.99635 * 4 2 1 33 33 H 0.97003 * 119.99998 * 359.97438 * 5 4 2 34 34 H 1.08001 * 119.96051 * 0.02562 * 9 8 6 35 35 H 1.08001 * 120.04331 * 179.97438 * 10 9 8 36 36 H 1.08000 * 120.20068 * 179.79860 * 13 12 11 37 37 H 1.08997 * 109.21554 * 35.94039 * 15 14 12 38 38 H 1.08996 * 109.21486 * 155.27381 * 15 14 12 39 39 H 1.09000 * 108.90315 * 185.53762 * 16 15 14 40 40 H 1.09000 * 108.90596 * 304.15123 * 16 15 14 41 41 H 1.09002 * 109.21078 * 55.48388 * 17 16 15 42 42 H 1.09000 * 109.21451 * 174.80955 * 17 16 15 43 43 H 0.97006 * 119.99735 * 264.99984 * 19 2 1 44 44 H 0.96997 * 119.99902 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.4999 -0.8265 1.1906 6 6 4.1730 -1.4284 2.1912 7 8 3.5683 -1.8846 3.1424 8 6 5.6440 -1.5338 2.1324 9 6 6.3398 -1.0105 1.0398 10 6 7.7139 -1.1083 0.9847 11 6 8.4056 -1.7278 2.0159 12 6 7.7191 -2.2516 3.1055 13 6 6.3428 -2.1627 3.1675 14 8 8.4139 -2.8585 4.1116 15 6 9.2362 -2.0030 4.9079 16 6 10.5908 -1.7921 4.2500 17 6 10.4825 -1.0495 2.9275 18 8 9.7643 -1.8277 1.9662 19 7 2.0183 -0.6906 -1.1961 20 6 2.1491 -0.0075 -2.3758 21 1 1.8919 1.0402 -2.4243 22 6 2.6123 -0.6619 -3.5090 23 7 2.9253 -1.9389 -3.4499 24 14 2.7901 0.2698 -5.1183 25 1 2.3754 1.6820 -4.9211 26 1 4.2072 0.2277 -5.5606 27 1 1.9299 -0.3596 -6.1523 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6053 -1.7198 1.2952 32 1 1.7515 -0.1584 2.1370 33 1 3.9823 -0.4629 0.4317 34 1 5.8007 -0.5281 0.2379 35 1 8.2512 -0.7039 0.1396 36 1 5.8094 -2.5725 4.0124 37 1 8.7413 -1.0392 5.0272 38 1 9.3802 -2.4554 5.8890 39 1 11.2261 -1.2192 4.9256 40 1 11.0517 -2.7636 4.0713 41 1 9.9611 -0.1058 3.0877 42 1 11.4836 -0.8455 2.5476 43 1 2.2490 -1.6319 -1.1525 44 1 3.2493 -2.3960 -4.2417 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752879808.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:23 Heat of formation + Delta-G solvation = -73.616340 kcal Electronic energy + Delta-G solvation = -26748.988546 eV Core-core repulsion = 22860.306097 eV Total energy + Delta-G solvation = -3888.682448 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.09397 -39.57333 -37.69111 -37.33473 -36.27700 -33.69480 -33.15212 -31.90156 -30.84755 -29.59627 -28.66809 -26.90827 -25.93120 -23.82545 -23.12501 -22.75581 -21.87655 -20.28703 -20.13570 -18.75445 -17.75116 -17.29691 -17.14238 -16.38023 -15.88985 -15.64745 -15.29125 -15.20254 -14.61748 -14.38549 -14.25040 -14.09908 -14.07163 -13.77034 -13.53641 -13.07625 -13.04219 -12.37315 -12.14863 -12.13724 -11.99999 -11.80442 -11.57391 -11.40058 -11.13080 -10.92011 -10.78768 -10.71930 -10.37198 -10.18562 -10.03359 -9.75648 -9.72864 -9.02865 -9.02292 -8.79085 -8.54262 -7.08006 -5.84554 -3.15425 0.59675 1.07431 2.71309 3.16311 3.37029 3.38028 3.43859 3.46144 3.55640 3.83864 4.28834 4.36613 4.51466 4.68142 4.75895 4.86485 4.92753 4.96664 5.04302 5.09719 5.16628 5.34531 5.37529 5.43565 5.45500 5.55045 5.60373 5.71895 5.91123 5.97284 6.06772 6.11819 6.15269 6.17035 6.29719 6.33049 6.53314 6.71271 6.78998 6.87372 7.00986 7.34274 7.63333 7.86433 8.32487 8.47726 9.44582 9.99104 10.34818 11.37131 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014838 B = 0.003153 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.639380 B = 8878.279756 C =10374.170723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.159 3.841 3 H 0.054 0.946 4 C 0.114 3.886 5 N -0.704 5.704 6 C 0.555 3.445 7 O -0.549 6.549 8 C -0.121 4.121 9 C -0.069 4.069 10 C -0.121 4.121 11 C 0.086 3.914 12 C 0.052 3.948 13 C -0.058 4.058 14 O -0.316 6.316 15 C 0.058 3.942 16 C -0.187 4.187 17 C 0.059 3.941 18 O -0.318 6.318 19 N -0.725 5.725 20 C -0.244 4.244 21 H 0.071 0.929 22 C -0.010 4.010 23 N -0.928 5.928 24 Si 0.905 3.095 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.292 1.292 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.039 0.961 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.410 0.590 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.147 0.853 37 H 0.058 0.942 38 H 0.104 0.896 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.059 0.941 42 H 0.104 0.896 43 H 0.386 0.614 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.659 4.134 15.688 21.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.049 3.951 3 H 0.072 0.928 4 C -0.010 4.010 5 N -0.356 5.356 6 C 0.342 3.658 7 O -0.429 6.429 8 C -0.124 4.124 9 C -0.088 4.088 10 C -0.140 4.140 11 C 0.042 3.958 12 C 0.008 3.992 13 C -0.077 4.077 14 O -0.233 6.233 15 C -0.017 4.017 16 C -0.225 4.225 17 C -0.015 4.015 18 O -0.235 6.235 19 N -0.367 5.367 20 C -0.375 4.375 21 H 0.089 0.911 22 C -0.206 4.206 23 N -0.576 5.576 24 Si 0.736 3.264 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.248 0.752 34 H 0.162 0.838 35 H 0.160 0.840 36 H 0.165 0.835 37 H 0.076 0.924 38 H 0.122 0.878 39 H 0.108 0.892 40 H 0.102 0.898 41 H 0.077 0.923 42 H 0.122 0.878 43 H 0.220 0.780 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 13.334 3.654 16.131 21.245 hybrid contribution 0.426 0.480 -1.295 1.445 sum 13.760 4.134 14.836 20.653 Atomic orbital electron populations 1.22361 0.98217 1.01339 1.00399 1.20518 0.92772 0.95731 0.86114 0.92815 1.21744 0.79036 1.01384 0.98822 1.45909 1.08467 1.58187 1.23042 1.18037 0.86563 0.78400 0.82793 1.90751 1.69782 1.48595 1.33756 1.19932 0.93720 1.02618 0.96156 1.21421 0.93686 0.96867 0.96816 1.21057 0.94112 0.99375 0.99439 1.19403 0.83665 0.97928 0.94822 1.18956 0.90773 0.99716 0.89735 1.21131 0.91809 0.95833 0.98943 1.86410 1.59789 1.33640 1.43413 1.22642 0.90033 0.95018 0.93999 1.22477 0.98928 1.03333 0.97758 1.22667 0.97256 0.92976 0.88625 1.86373 1.14108 1.66954 1.56051 1.42504 1.78092 1.10874 1.05264 1.19254 1.37024 0.93913 0.87326 0.91056 1.24750 1.01977 0.95896 0.97994 1.69672 1.50379 1.08588 1.28912 0.86161 0.77314 0.78793 0.84131 1.20575 1.21854 1.21894 0.92292 0.93155 0.94162 0.91562 0.91593 0.75205 0.83848 0.83963 0.83503 0.92356 0.87814 0.89178 0.89754 0.92274 0.87766 0.78038 0.93442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.49 37.16 0.35 -2.40 16 2 C 0.16 2.90 3.05 -67.93 -0.21 2.69 16 3 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 4 C 0.11 1.92 5.23 -4.04 -0.02 1.90 16 5 N -0.70 -11.71 5.34 -61.33 -0.33 -12.03 16 6 C 0.56 9.49 7.76 -12.44 -0.10 9.40 16 7 O -0.55 -10.79 16.34 5.29 0.09 -10.70 16 8 C -0.12 -1.81 5.88 -104.94 -0.62 -2.42 16 9 C -0.07 -0.93 9.53 -39.17 -0.37 -1.30 16 10 C -0.12 -1.52 9.98 -39.52 -0.39 -1.92 16 11 C 0.09 1.14 5.74 -39.09 -0.22 0.91 16 12 C 0.05 0.71 5.72 -39.36 -0.23 0.49 16 13 C -0.06 -0.83 9.54 -39.06 -0.37 -1.20 16 14 O -0.32 -4.04 10.16 -36.80 -0.37 -4.42 16 15 C 0.06 0.49 6.51 36.68 0.24 0.73 16 16 C -0.19 -1.31 5.92 -27.69 -0.16 -1.48 16 17 C 0.06 0.48 6.51 36.68 0.24 0.72 16 18 O -0.32 -3.92 10.16 -36.22 -0.37 -4.28 16 19 N -0.72 -16.60 4.56 -53.43 -0.24 -16.85 16 20 C -0.24 -6.26 9.93 -15.06 -0.15 -6.41 16 21 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 22 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 23 N -0.93 -26.69 13.06 55.49 0.72 -25.97 16 24 Si 0.90 21.36 29.55 -169.99 -5.02 16.34 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 H 0.06 1.07 8.14 -51.92 -0.42 0.64 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.41 6.74 6.15 -40.82 -0.25 6.49 16 34 H 0.14 1.85 6.38 -52.49 -0.34 1.51 16 35 H 0.14 1.53 8.06 -52.49 -0.42 1.10 16 36 H 0.15 2.10 7.65 -52.49 -0.40 1.70 16 37 H 0.06 0.46 7.93 -51.93 -0.41 0.05 16 38 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.44 7.93 -51.93 -0.41 0.03 16 42 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.39 9.66 7.80 -40.82 -0.32 9.34 16 44 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 366.20 15.07 5.52 5.52 Total: -1.00 -31.58 366.20 -8.44 -40.02 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -6.32 Total: 13.02 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -2.11 Total: -0.65 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 0.15 Total: -54.85 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.66 Total: -19.40 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.58 -8.44 -40.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752879808.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.594 kcal (2) G-P(sol) polarization free energy of solvation -31.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds