Wall clock time and date at job start Tue Mar 31 2020 13:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 109.47417 * 2 1 4 4 C 1.53002 * 109.46745 * 120.00182 * 2 1 3 5 5 N 1.46503 * 109.46974 * 175.00051 * 4 2 1 6 6 C 1.34771 * 120.00248 * 179.97438 * 5 4 2 7 7 O 1.21590 * 120.00088 * 0.02562 * 6 5 4 8 8 C 1.47601 * 120.00399 * 180.02562 * 6 5 4 9 9 C 1.39703 * 120.04937 * 359.97438 * 8 6 5 10 10 C 1.37867 * 120.07476 * 179.97438 * 9 8 6 11 11 C 1.38771 * 119.91284 * 0.02562 * 10 9 8 12 12 C 1.39021 * 120.29957 * 0.02562 * 11 10 9 13 13 C 1.38055 * 120.21006 * 0.20093 * 12 11 10 14 14 O 1.36505 * 119.59260 * 179.97438 * 12 11 10 15 15 C 1.42901 * 115.93691 * 68.31327 * 14 12 11 16 16 C 1.52059 * 110.76749 * 275.60564 * 15 14 12 17 17 C 1.52064 * 112.36521 * 64.80039 * 16 15 14 18 18 O 1.36329 * 120.15321 * 179.97438 * 11 10 9 19 19 N 1.46498 * 109.47046 * 239.99779 * 2 1 3 20 20 C 1.36942 * 120.00085 * 85.00424 * 19 2 1 21 21 H 1.07995 * 119.99450 * 359.97438 * 20 19 2 22 22 C 1.38814 * 119.99937 * 179.97438 * 20 19 2 23 23 N 1.31617 * 120.00125 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99691 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47288 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.46771 * 120.00402 * 24 22 20 27 27 H 1.48503 * 109.46878 * 239.99946 * 24 22 20 28 28 H 1.09008 * 109.47357 * 60.00130 * 1 2 3 29 29 H 1.09002 * 109.47299 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47532 * 300.00327 * 1 2 3 31 31 H 1.08992 * 109.47725 * 54.99863 * 4 2 1 32 32 H 1.09000 * 109.47020 * 294.99635 * 4 2 1 33 33 H 0.97003 * 119.99998 * 359.97438 * 5 4 2 34 34 H 1.08001 * 119.96051 * 0.02562 * 9 8 6 35 35 H 1.08001 * 120.04331 * 179.97438 * 10 9 8 36 36 H 1.08000 * 120.20068 * 179.79860 * 13 12 11 37 37 H 1.08997 * 109.21554 * 35.94039 * 15 14 12 38 38 H 1.08996 * 109.21486 * 155.27381 * 15 14 12 39 39 H 1.09000 * 108.90315 * 185.53762 * 16 15 14 40 40 H 1.09000 * 108.90596 * 304.15123 * 16 15 14 41 41 H 1.09002 * 109.21078 * 55.48388 * 17 16 15 42 42 H 1.09000 * 109.21451 * 174.80955 * 17 16 15 43 43 H 0.97006 * 119.99735 * 264.99984 * 19 2 1 44 44 H 0.96997 * 119.99902 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.4999 -0.8265 1.1906 6 6 4.1730 -1.4284 2.1912 7 8 3.5683 -1.8846 3.1424 8 6 5.6440 -1.5338 2.1324 9 6 6.3398 -1.0105 1.0398 10 6 7.7139 -1.1083 0.9847 11 6 8.4056 -1.7278 2.0159 12 6 7.7191 -2.2516 3.1055 13 6 6.3428 -2.1627 3.1675 14 8 8.4139 -2.8585 4.1116 15 6 9.2362 -2.0030 4.9079 16 6 10.5908 -1.7921 4.2500 17 6 10.4825 -1.0495 2.9275 18 8 9.7643 -1.8277 1.9662 19 7 2.0183 -0.6906 -1.1961 20 6 2.1491 -0.0075 -2.3758 21 1 1.8919 1.0402 -2.4243 22 6 2.6123 -0.6619 -3.5090 23 7 2.9253 -1.9389 -3.4499 24 14 2.7901 0.2698 -5.1183 25 1 2.3754 1.6820 -4.9211 26 1 4.2072 0.2277 -5.5606 27 1 1.9299 -0.3596 -6.1523 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6053 -1.7198 1.2952 32 1 1.7515 -0.1584 2.1370 33 1 3.9823 -0.4629 0.4317 34 1 5.8007 -0.5281 0.2379 35 1 8.2512 -0.7039 0.1396 36 1 5.8094 -2.5725 4.0124 37 1 8.7413 -1.0392 5.0272 38 1 9.3802 -2.4554 5.8890 39 1 11.2261 -1.2192 4.9256 40 1 11.0517 -2.7636 4.0713 41 1 9.9611 -0.1058 3.0877 42 1 11.4836 -0.8455 2.5476 43 1 2.2490 -1.6319 -1.1525 44 1 3.2493 -2.3960 -4.2417 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752879808.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:22 Heat of formation + Delta-G solvation = -94.321683 kcal Electronic energy + Delta-G solvation = -26749.886397 eV Core-core repulsion = 22860.306097 eV Total energy + Delta-G solvation = -3889.580299 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.05167 -40.83738 -38.57970 -38.43006 -37.79317 -35.27029 -34.03695 -33.52042 -31.88765 -30.86407 -30.23317 -27.68726 -27.20630 -25.67757 -24.29671 -23.76639 -22.59123 -21.73607 -21.41168 -19.77223 -19.28201 -18.67018 -18.10681 -17.54371 -17.00106 -16.85539 -16.44024 -16.36956 -16.09465 -15.60505 -15.45904 -15.17291 -15.09276 -14.87945 -14.85660 -14.36418 -13.99055 -13.88024 -13.65106 -13.48015 -13.06021 -12.98058 -12.85552 -12.79842 -12.47645 -12.34689 -12.10979 -11.83295 -11.69276 -11.63351 -11.43111 -11.18075 -11.01153 -10.93404 -10.17079 -10.01173 -9.63115 -9.00502 -7.88898 -5.18237 -0.47950 0.04467 1.51104 1.53176 1.57266 1.61566 2.10193 2.40133 2.44036 2.59934 2.74676 3.45415 3.61177 3.65841 3.71415 3.85292 3.90318 3.94123 4.02708 4.15398 4.19096 4.21166 4.36041 4.36422 4.41276 4.63027 4.65393 4.74763 4.77432 4.83796 4.85076 4.97611 5.07978 5.08738 5.09075 5.10845 5.26861 5.29522 5.40056 5.59898 5.59946 6.04353 6.31339 6.42948 6.51423 7.12817 7.39015 8.10887 8.35496 9.33752 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014838 B = 0.003153 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.639380 B = 8878.279756 C =10374.170723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.159 3.841 3 H 0.063 0.937 4 C 0.121 3.879 5 N -0.702 5.702 6 C 0.556 3.444 7 O -0.580 6.580 8 C -0.136 4.136 9 C -0.067 4.067 10 C -0.120 4.120 11 C 0.090 3.910 12 C 0.051 3.949 13 C -0.065 4.065 14 O -0.337 6.337 15 C 0.046 3.954 16 C -0.182 4.182 17 C 0.048 3.952 18 O -0.336 6.336 19 N -0.733 5.733 20 C -0.231 4.231 21 H 0.079 0.921 22 C -0.070 4.070 23 N -0.966 5.966 24 Si 0.965 3.035 25 H -0.265 1.265 26 H -0.295 1.295 27 H -0.303 1.303 28 H 0.045 0.955 29 H 0.041 0.959 30 H 0.074 0.926 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.411 0.589 34 H 0.147 0.853 35 H 0.162 0.838 36 H 0.140 0.860 37 H 0.064 0.936 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.129 0.871 43 H 0.372 0.628 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.929 5.890 16.435 22.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.051 3.949 3 H 0.081 0.919 4 C -0.003 4.003 5 N -0.353 5.353 6 C 0.344 3.656 7 O -0.462 6.462 8 C -0.139 4.139 9 C -0.086 4.086 10 C -0.138 4.138 11 C 0.045 3.955 12 C 0.006 3.994 13 C -0.085 4.085 14 O -0.254 6.254 15 C -0.028 4.028 16 C -0.220 4.220 17 C -0.025 4.025 18 O -0.253 6.253 19 N -0.374 5.374 20 C -0.363 4.363 21 H 0.097 0.903 22 C -0.262 4.262 23 N -0.617 5.617 24 Si 0.795 3.205 25 H -0.190 1.190 26 H -0.223 1.223 27 H -0.230 1.230 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.104 0.896 33 H 0.249 0.751 34 H 0.165 0.835 35 H 0.180 0.820 36 H 0.158 0.842 37 H 0.082 0.918 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.147 0.853 43 H 0.204 0.796 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 14.595 5.467 16.909 22.996 hybrid contribution 0.108 -0.034 -1.384 1.389 sum 14.703 5.433 15.524 22.061 Atomic orbital electron populations 1.22242 0.96722 1.01168 1.01456 1.20695 0.93647 0.95739 0.84865 0.91865 1.21665 0.79104 1.00738 0.98774 1.45890 1.08435 1.58023 1.22963 1.18334 0.87452 0.77617 0.82208 1.90723 1.70613 1.49987 1.34891 1.19779 0.92484 1.04303 0.97306 1.21443 0.94162 0.96700 0.96319 1.21245 0.93699 0.99044 0.99844 1.19515 0.84414 0.97145 0.94438 1.18997 0.90544 0.99419 0.90397 1.21101 0.92351 0.96283 0.98746 1.86367 1.60380 1.35111 1.43579 1.23011 0.90241 0.95053 0.94484 1.22467 0.98356 1.03356 0.97785 1.23044 0.97974 0.92933 0.88596 1.86338 1.13470 1.67889 1.57591 1.42644 1.78323 1.10338 1.06093 1.19597 1.34541 0.94186 0.87999 0.90264 1.25434 1.03172 0.96634 1.00996 1.69822 1.52558 1.10129 1.29151 0.85197 0.76574 0.78299 0.80390 1.18972 1.22252 1.23047 0.93555 0.93980 0.90726 0.92908 0.89608 0.75063 0.83515 0.82021 0.84211 0.91796 0.85662 0.85657 0.90604 0.91446 0.85276 0.79555 0.94283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.00 9.49 71.98 0.68 -4.32 16 2 C 0.16 5.60 3.05 44.99 0.14 5.74 16 3 H 0.06 2.15 8.08 -2.39 -0.02 2.13 16 4 C 0.12 3.98 5.23 86.38 0.45 4.43 16 5 N -0.70 -23.26 5.34 -466.21 -2.49 -25.75 16 6 C 0.56 19.24 7.76 86.72 0.67 19.92 16 7 O -0.58 -23.20 16.34 -4.00 -0.07 -23.26 16 8 C -0.14 -4.10 5.88 -20.07 -0.12 -4.22 16 9 C -0.07 -1.79 9.53 22.54 0.21 -1.58 16 10 C -0.12 -2.90 9.98 22.31 0.22 -2.68 16 11 C 0.09 2.28 5.74 22.59 0.13 2.41 16 12 C 0.05 1.36 5.72 22.41 0.13 1.49 16 13 C -0.07 -1.91 9.54 22.61 0.22 -1.70 16 14 O -0.34 -8.44 10.16 -84.62 -0.86 -9.30 16 15 C 0.05 0.70 6.51 71.67 0.47 1.17 16 16 C -0.18 -2.08 5.92 29.98 0.18 -1.90 16 17 C 0.05 0.66 6.51 71.67 0.47 1.13 16 18 O -0.34 -7.74 10.16 -82.56 -0.84 -8.58 16 19 N -0.73 -33.36 4.56 -322.95 -1.47 -34.84 16 20 C -0.23 -11.69 9.93 84.03 0.83 -10.86 16 21 H 0.08 3.83 7.83 -2.91 -0.02 3.81 16 22 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 23 N -0.97 -56.42 13.06 21.65 0.28 -56.14 16 24 Si 0.96 43.90 29.55 68.60 2.03 45.92 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 26 H -0.30 -13.48 7.11 99.48 0.71 -12.77 16 27 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 28 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 29 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 31 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.41 13.47 6.15 -92.71 -0.57 12.90 16 34 H 0.15 3.74 6.38 -2.91 -0.02 3.72 16 35 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 36 H 0.14 4.18 7.65 -2.91 -0.02 4.16 16 37 H 0.06 0.90 7.93 -2.39 -0.02 0.88 16 38 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.07 0.83 7.93 -2.39 -0.02 0.81 16 42 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.37 18.90 7.80 -92.70 -0.72 18.18 16 44 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -68.06 366.20 1.47 -66.59 By element: Atomic # 1 Polarization: 39.86 SS G_CDS: -0.26 Total: 39.60 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: 5.15 Total: 5.75 kcal Atomic # 7 Polarization: -113.05 SS G_CDS: -3.68 Total: -116.72 kcal Atomic # 8 Polarization: -39.37 SS G_CDS: -1.76 Total: -41.14 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -68.06 1.47 -66.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752879808.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.733 kcal (2) G-P(sol) polarization free energy of solvation -68.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds