Wall clock time and date at job start Tue Mar 31 2020 13:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.47518 * 2 1 4 4 C 1.53006 * 109.47021 * 239.99913 * 2 1 3 5 5 C 1.50699 * 109.46866 * 65.00201 * 4 2 1 6 6 O 1.21282 * 120.00040 * 359.97438 * 5 4 2 7 7 N 1.34779 * 120.00033 * 180.02562 * 5 4 2 8 8 C 1.46666 * 125.33627 * 179.97438 * 7 5 4 9 9 C 1.53731 * 107.94061 * 180.51774 * 8 7 5 10 10 H 1.09000 * 112.56056 * 139.71874 * 9 8 7 11 11 C 1.53687 * 109.34322 * 266.25356 * 9 8 7 12 12 N 1.47175 * 107.73112 * 128.69246 * 11 9 8 13 13 C 1.36937 * 125.25309 * 180.35999 * 12 11 9 14 14 H 1.07998 * 119.99838 * 179.17896 * 13 12 11 15 15 C 1.38809 * 120.00290 * 359.18417 * 13 12 11 16 16 N 1.31622 * 119.99829 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00307 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46806 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46941 * 119.99720 * 17 15 13 20 20 H 1.48497 * 109.47095 * 239.99979 * 17 15 13 21 21 C 1.46741 * 109.41432 * 359.65648 * 12 11 9 22 22 C 1.53935 * 106.71894 * 342.40423 * 21 12 11 23 23 H 1.09002 * 113.01205 * 150.83489 * 22 21 12 24 24 C 1.46770 * 125.33653 * 359.69229 * 7 5 4 25 25 C 1.52999 * 109.47148 * 120.00339 * 2 1 3 26 26 F 1.39901 * 109.47222 * 179.97438 * 25 2 1 27 27 F 1.39895 * 109.46889 * 299.99622 * 25 2 1 28 28 F 1.39902 * 109.47372 * 59.99804 * 25 2 1 29 29 H 1.09004 * 109.47446 * 59.99546 * 1 2 3 30 30 H 1.08992 * 109.47518 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46905 * 300.00035 * 1 2 3 32 32 H 1.08993 * 109.46955 * 185.00420 * 4 2 1 33 33 H 1.09000 * 109.47050 * 305.00249 * 4 2 1 34 34 H 1.08997 * 109.77860 * 300.14000 * 8 7 5 35 35 H 1.09006 * 109.77135 * 60.90465 * 8 7 5 36 36 H 1.09001 * 109.76018 * 247.19436 * 11 9 8 37 37 H 1.08996 * 109.76080 * 7.92028 * 11 9 8 38 38 H 0.96996 * 120.00000 * 179.97438 * 16 15 13 39 39 H 1.09001 * 110.00934 * 223.08900 * 21 12 11 40 40 H 1.09003 * 110.01448 * 101.71756 * 21 12 11 41 41 H 1.09004 * 110.02498 * 280.79798 * 24 7 5 42 42 H 1.08997 * 110.03081 * 42.21087 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0570 -2.4766 6 8 1.0109 1.0870 -2.3633 7 7 1.9844 -0.3919 -3.7002 8 6 1.6585 0.2689 -4.9684 9 6 2.2287 -0.5889 -6.1096 10 1 1.5535 -0.6520 -6.9629 11 6 3.6266 -0.0723 -6.4852 12 7 4.5465 -1.2211 -6.4759 13 6 5.8862 -1.1632 -6.7532 14 1 6.4861 -2.0601 -6.7085 15 6 6.4732 0.0482 -7.0918 16 7 5.7419 1.1412 -7.1467 17 14 8.3009 0.1274 -7.4695 18 1 8.8923 -1.2285 -7.3393 19 1 8.4989 0.6222 -8.8555 20 1 8.9642 1.0511 -6.5145 21 6 3.8080 -2.4343 -6.1069 22 6 2.4949 -1.9710 -5.4506 23 1 1.6769 -2.6782 -5.5884 24 6 2.7477 -1.6156 -3.9723 25 6 2.0400 -0.7213 1.2492 26 9 3.4390 -0.7218 1.2489 27 9 1.5737 -0.0618 2.3914 28 9 1.5736 -2.0403 1.2492 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.1262 -0.7996 -1.2056 33 1 1.6053 -1.7198 -1.2952 34 1 0.5768 0.3513 -5.0741 35 1 2.1083 1.2616 -4.9931 36 1 3.6044 0.3553 -7.4875 37 1 3.9446 0.6847 -5.7684 38 1 6.1522 1.9879 -7.3829 39 1 4.3904 -3.0248 -5.3996 40 1 3.5918 -3.0248 -6.9972 41 1 3.8100 -1.4379 -3.8050 42 1 2.3984 -2.4240 -3.3299 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754845591.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:28 Heat of formation + Delta-G solvation = -167.854057 kcal Electronic energy + Delta-G solvation = -28209.011652 eV Core-core repulsion = 23774.386009 eV Total energy + Delta-G solvation = -4434.625643 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.145 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.28969 -47.76844 -47.74855 -40.34979 -38.56818 -35.34072 -34.84569 -32.36493 -30.66525 -29.50217 -28.22073 -26.49351 -25.56626 -25.34769 -23.08555 -21.54639 -20.17282 -19.40647 -19.33745 -18.66052 -18.38391 -17.81278 -16.94184 -16.42770 -16.08270 -15.71611 -14.86943 -14.77945 -14.61513 -14.41413 -14.18642 -13.99768 -13.90305 -13.87256 -13.77505 -13.41875 -13.15759 -13.09626 -12.80245 -12.29412 -12.11554 -12.01648 -11.63212 -11.55695 -11.51551 -11.48702 -11.43024 -10.93005 -10.87172 -10.48186 -10.16631 -10.10480 -9.91078 -9.75327 -9.66995 -8.66380 -8.41851 -6.89804 -5.77863 -3.11867 2.50707 2.65486 3.08308 3.36343 3.42073 3.44540 3.62503 3.83372 3.87316 4.43215 4.44802 4.57578 4.64220 4.77857 4.94383 5.06499 5.17252 5.27896 5.33559 5.45476 5.50326 5.54642 5.59761 5.64411 5.69152 5.80507 5.90909 6.03804 6.11717 6.21658 6.30523 6.45614 6.50992 6.56016 6.74724 7.49651 7.51554 7.66154 7.75884 8.19390 8.20677 9.15561 9.76526 10.39589 11.33719 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.016852 B = 0.003331 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.155579 B = 8404.567853 C = 9054.323982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.117 4.117 3 H 0.123 0.877 4 C -0.140 4.140 5 C 0.533 3.467 6 O -0.545 6.545 7 N -0.604 5.604 8 C 0.121 3.879 9 C -0.124 4.124 10 H 0.091 0.909 11 C 0.185 3.815 12 N -0.604 5.604 13 C -0.231 4.231 14 H 0.079 0.921 15 C -0.006 4.006 16 N -0.921 5.921 17 Si 0.911 3.089 18 H -0.280 1.280 19 H -0.290 1.290 20 H -0.291 1.291 21 C 0.146 3.854 22 C -0.111 4.111 23 H 0.089 0.911 24 C 0.109 3.891 25 C 0.453 3.547 26 F -0.183 7.183 27 F -0.183 7.183 28 F -0.183 7.183 29 H 0.098 0.902 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.047 0.953 37 H 0.050 0.950 38 H 0.252 0.748 39 H 0.037 0.963 40 H 0.022 0.978 41 H 0.081 0.919 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.068 -5.712 12.876 17.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.137 4.137 3 H 0.141 0.859 4 C -0.180 4.180 5 C 0.322 3.678 6 O -0.424 6.424 7 N -0.336 5.336 8 C -0.002 4.002 9 C -0.143 4.143 10 H 0.109 0.891 11 C 0.060 3.940 12 N -0.331 5.331 13 C -0.359 4.359 14 H 0.097 0.903 15 C -0.202 4.202 16 N -0.568 5.568 17 Si 0.742 3.258 18 H -0.205 1.205 19 H -0.217 1.217 20 H -0.218 1.218 21 C 0.019 3.981 22 C -0.130 4.130 23 H 0.108 0.892 24 C -0.014 4.014 25 C 0.399 3.601 26 F -0.164 7.164 27 F -0.164 7.164 28 F -0.165 7.165 29 H 0.117 0.883 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.039 0.961 41 H 0.099 0.901 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.240 -5.000 12.966 17.874 hybrid contribution 1.225 -0.077 -0.010 1.227 sum -10.016 -5.077 12.957 17.146 Atomic orbital electron populations 1.21998 0.90973 1.03298 1.05198 1.22171 1.00277 1.01796 0.89488 0.85880 1.21680 1.04161 1.00538 0.91612 1.19735 0.79580 0.85357 0.83175 1.90666 1.41074 1.24649 1.86003 1.48239 1.54311 1.25447 1.05624 1.21844 0.99279 0.97081 0.81964 1.23171 1.00802 0.94022 0.96347 0.89051 1.21213 0.82577 0.89460 1.00726 1.44362 1.05326 1.02072 1.81292 1.19081 0.82505 0.94382 1.39957 0.90307 1.24798 0.98196 0.95557 1.01692 1.69958 1.33876 0.98581 1.54377 0.86053 0.84665 0.77434 0.77651 1.20480 1.21715 1.21755 1.21147 0.90015 0.90833 0.96057 1.22929 0.99258 0.97477 0.93381 0.89239 1.22173 0.97036 0.85610 0.96601 1.20652 0.75495 0.77674 0.86260 1.93198 1.29998 1.96406 1.96790 1.93171 1.88488 1.80760 1.53993 1.93165 1.88461 1.38018 1.96832 0.88289 0.91867 0.91477 0.87512 0.87686 0.92201 0.90768 0.93497 0.93181 0.93720 0.94469 0.96075 0.90103 0.91500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 8.69 37.16 0.32 -1.21 16 2 C -0.12 -1.22 2.01 -90.62 -0.18 -1.40 16 3 H 0.12 1.33 7.95 -51.93 -0.41 0.92 16 4 C -0.14 -1.53 3.96 -27.88 -0.11 -1.64 16 5 C 0.53 7.70 7.55 -10.99 -0.08 7.62 16 6 O -0.55 -9.20 14.27 5.56 0.08 -9.12 16 7 N -0.60 -9.11 3.31 -172.19 -0.57 -9.68 16 8 C 0.12 1.94 6.23 -3.57 -0.02 1.92 16 9 C -0.12 -2.08 4.01 -88.60 -0.36 -2.44 16 10 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 11 C 0.18 4.18 4.77 -3.32 -0.02 4.16 16 12 N -0.60 -14.35 3.39 -171.51 -0.58 -14.93 16 13 C -0.23 -6.14 10.25 -15.06 -0.15 -6.30 16 14 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 15 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 16 N -0.92 -26.25 10.25 55.49 0.57 -25.69 16 17 Si 0.91 21.58 29.55 -169.99 -5.02 16.56 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 21 C 0.15 2.70 6.41 -3.42 -0.02 2.68 16 22 C -0.11 -1.66 4.14 -88.26 -0.37 -2.02 16 23 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 24 C 0.11 1.53 5.88 -3.30 -0.02 1.51 16 25 C 0.45 4.73 2.69 37.16 0.10 4.83 16 26 F -0.18 -2.09 16.71 2.25 0.04 -2.05 16 27 F -0.18 -1.98 16.80 2.25 0.04 -1.94 16 28 F -0.18 -1.92 16.37 2.25 0.04 -1.88 16 29 H 0.10 1.14 5.95 -51.93 -0.31 0.83 16 30 H 0.06 0.55 7.80 -51.93 -0.41 0.14 16 31 H 0.07 0.59 7.80 -51.93 -0.41 0.18 16 32 H 0.11 1.13 7.66 -51.93 -0.40 0.73 16 33 H 0.10 0.95 7.68 -51.93 -0.40 0.55 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 1.35 7.44 -51.93 -0.39 0.96 16 36 H 0.05 1.20 7.40 -51.93 -0.38 0.82 16 37 H 0.05 1.28 6.58 -51.93 -0.34 0.94 16 38 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.04 0.66 7.97 -51.93 -0.41 0.25 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.08 1.34 7.76 -51.93 -0.40 0.93 16 42 H 0.07 0.73 7.61 -51.93 -0.40 0.34 16 LS Contribution 342.37 15.07 5.16 5.16 Total: -1.00 -30.07 342.37 -7.15 -37.22 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -5.89 Total: -1.10 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: -1.00 Total: 7.46 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: -0.58 Total: -50.30 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.08 Total: -9.12 kcal Atomic # 9 Polarization: -5.98 SS G_CDS: 0.11 Total: -5.87 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.07 -7.15 -37.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754845591.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.633 kcal (2) G-P(sol) polarization free energy of solvation -30.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds