Wall clock time and date at job start Tue Mar 31 2020 13:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46802 * 2 1 4 4 N 1.46493 * 109.47099 * 120.00372 * 2 1 3 5 5 C 1.36945 * 119.99892 * 274.99565 * 4 2 1 6 6 H 1.08000 * 119.99422 * 359.72792 * 5 4 2 7 7 C 1.38811 * 120.00031 * 179.72716 * 5 4 2 8 8 N 1.31616 * 119.99707 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99814 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47112 * 89.99774 * 9 7 5 11 11 H 1.48498 * 109.47011 * 210.00042 * 9 7 5 12 12 H 1.48499 * 109.47134 * 329.99663 * 9 7 5 13 13 C 1.52996 * 109.46775 * 240.00268 * 2 1 3 14 14 H 1.09000 * 109.47178 * 174.99941 * 13 2 1 15 15 C 1.53001 * 109.47260 * 294.99936 * 13 2 1 16 16 N 1.46503 * 109.47576 * 54.99839 * 13 2 1 17 17 C 1.34783 * 119.99957 * 154.99787 * 16 13 2 18 18 O 1.21578 * 119.99918 * 0.02562 * 17 16 13 19 19 C 1.47608 * 119.99422 * 180.02562 * 17 16 13 20 20 C 1.39696 * 120.10122 * 359.72557 * 19 17 16 21 21 C 1.37731 * 119.96607 * 179.77162 * 20 19 17 22 22 C 1.39004 * 120.26823 * 0.56949 * 21 20 19 23 23 C 1.39263 * 120.04672 * 359.62379 * 22 21 20 24 24 C 1.38293 * 119.95798 * 0.11397 * 23 22 21 25 25 O 1.36148 * 120.76333 * 180.26727 * 23 22 21 26 26 C 1.43167 * 116.70700 * 342.85628 * 25 23 22 27 27 C 1.53464 * 108.23825 * 46.14378 * 26 25 23 28 28 O 1.35970 * 119.24146 * 179.53443 * 22 21 20 29 29 H 1.09005 * 109.47224 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46783 * 300.00069 * 1 2 3 31 31 H 1.09003 * 109.47308 * 59.99705 * 1 2 3 32 32 H 0.97000 * 120.00738 * 94.73029 * 4 2 1 33 33 H 0.97004 * 119.99151 * 179.97438 * 8 7 5 34 34 H 1.08999 * 109.47094 * 180.02562 * 15 13 2 35 35 H 1.09002 * 109.46895 * 299.99893 * 15 13 2 36 36 H 1.08988 * 109.47377 * 59.99776 * 15 13 2 37 37 H 0.96997 * 119.99683 * 335.00272 * 16 13 2 38 38 H 1.07997 * 120.01740 * 0.02562 * 20 19 17 39 39 H 1.08003 * 119.86343 * 180.29836 * 21 20 19 40 40 H 1.07994 * 120.02083 * 179.97438 * 24 23 22 41 41 H 1.08998 * 109.70820 * 165.82934 * 26 25 23 42 42 H 1.08998 * 109.70960 * 286.45623 * 26 25 23 43 43 H 1.08998 * 109.70886 * 59.87285 * 27 26 25 44 44 H 1.08997 * 109.71193 * 180.49729 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1492 -0.0075 2.3757 6 1 1.8965 1.0414 2.4231 7 6 2.6065 -0.6633 3.5105 8 7 2.9148 -1.9415 3.4525 9 14 2.7843 0.2684 5.1197 10 1 1.5143 0.1823 5.8845 11 1 3.8846 -0.3287 5.9185 12 1 3.0954 1.6924 4.8355 13 6 2.0399 -0.7212 -1.2493 14 1 3.1262 -0.6443 -1.2952 15 6 1.6351 -2.1954 -1.1881 16 7 1.4557 -0.1036 -2.4424 17 6 2.0912 -0.1937 -3.6276 18 8 3.1489 -0.7879 -3.7066 19 6 1.5027 0.4290 -4.8296 20 6 0.2847 1.1074 -4.7423 21 6 -0.2595 1.6915 -5.8646 22 6 0.3926 1.5992 -7.0887 23 6 1.6052 0.9209 -7.1833 24 6 2.1595 0.3369 -6.0589 25 8 2.2591 0.8262 -8.3737 26 6 1.4944 1.1038 -9.5518 27 6 0.6904 2.3885 -9.3108 28 8 -0.1681 2.1754 -8.1851 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 2.2453 -1.6328 1.1535 33 1 3.2347 -2.3996 4.2454 34 1 1.9988 -2.7093 -2.0779 35 1 2.0698 -2.6550 -0.3004 36 1 0.5489 -2.2724 -1.1421 37 1 0.6117 0.3702 -2.3794 38 1 -0.2280 1.1773 -3.7943 39 1 -1.1990 2.2196 -5.7942 40 1 3.0995 -0.1897 -6.1312 41 1 2.1641 1.2430 -10.4004 42 1 0.8138 0.2762 -9.7517 43 1 1.3707 3.2144 -9.1031 44 1 0.0911 2.6179 -10.1918 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755271822.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:03 Heat of formation + Delta-G solvation = -65.795415 kcal Electronic energy + Delta-G solvation = -26495.598526 eV Core-core repulsion = 22607.255219 eV Total energy + Delta-G solvation = -3888.343307 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.64666 -39.93426 -37.74027 -37.66487 -36.70885 -33.95869 -32.17216 -31.37859 -31.03191 -29.63143 -28.52141 -28.19964 -25.47840 -24.47169 -23.83292 -22.77471 -22.08563 -20.29752 -19.43264 -18.94164 -18.10727 -17.62028 -17.42778 -16.49423 -15.83631 -15.72346 -15.35403 -14.96009 -14.79217 -14.56932 -14.33867 -14.20421 -14.12502 -14.03205 -13.57698 -13.45453 -12.93989 -12.71085 -12.43020 -12.19582 -11.98091 -11.62038 -11.52135 -11.46711 -11.28531 -10.92874 -10.89370 -10.83355 -10.45863 -10.25130 -9.98044 -9.85761 -9.62772 -9.02201 -8.93864 -8.81254 -8.43488 -7.00108 -5.77946 -3.07441 0.56775 0.97875 2.49965 2.74909 2.83304 3.34959 3.43695 3.49140 3.50560 3.66269 3.74725 4.20236 4.33441 4.42737 4.58111 4.65883 4.70159 4.82332 4.97030 4.98353 5.05618 5.36146 5.46691 5.49509 5.63677 5.65506 5.74630 5.78689 5.84624 6.00431 6.07921 6.14567 6.16934 6.30762 6.40881 6.45209 6.49869 6.64512 6.72535 6.92913 6.99478 7.08135 7.68194 7.69317 8.35825 8.40943 9.51875 10.07266 10.42081 11.44625 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.032760 B = 0.002278 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.507253 B =12287.613032 C =12638.075983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.168 3.832 3 H 0.052 0.948 4 N -0.719 5.719 5 C -0.240 4.240 6 H 0.071 0.929 7 C -0.012 4.012 8 N -0.931 5.931 9 Si 0.908 3.092 10 H -0.290 1.290 11 H -0.291 1.291 12 H -0.282 1.282 13 C 0.136 3.864 14 H 0.090 0.910 15 C -0.160 4.160 16 N -0.713 5.713 17 C 0.558 3.442 18 O -0.536 6.536 19 C -0.125 4.125 20 C -0.080 4.080 21 C -0.120 4.120 22 C 0.071 3.929 23 C 0.040 3.960 24 C -0.053 4.053 25 O -0.304 6.304 26 C 0.020 3.980 27 C 0.019 3.981 28 O -0.305 6.305 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.031 0.969 32 H 0.387 0.613 33 H 0.256 0.744 34 H 0.051 0.949 35 H 0.077 0.923 36 H 0.056 0.944 37 H 0.397 0.603 38 H 0.138 0.862 39 H 0.142 0.858 40 H 0.149 0.851 41 H 0.123 0.877 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.066 7.876 -27.263 29.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.057 3.943 3 H 0.070 0.930 4 N -0.363 5.363 5 C -0.371 4.371 6 H 0.089 0.911 7 C -0.209 4.209 8 N -0.579 5.579 9 Si 0.739 3.261 10 H -0.217 1.217 11 H -0.218 1.218 12 H -0.208 1.208 13 C 0.031 3.969 14 H 0.108 0.892 15 C -0.218 4.218 16 N -0.365 5.365 17 C 0.344 3.656 18 O -0.414 6.414 19 C -0.128 4.128 20 C -0.099 4.099 21 C -0.139 4.139 22 C 0.025 3.975 23 C -0.005 4.005 24 C -0.073 4.073 25 O -0.219 6.219 26 C -0.056 4.056 27 C -0.056 4.056 28 O -0.219 6.219 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.050 0.950 32 H 0.223 0.777 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.075 0.925 37 H 0.234 0.766 38 H 0.156 0.844 39 H 0.159 0.841 40 H 0.167 0.833 41 H 0.141 0.859 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.265 7.571 -27.198 29.151 hybrid contribution -0.343 0.468 0.679 0.893 sum -7.608 8.038 -26.518 28.735 Atomic orbital electron populations 1.22550 0.99365 1.01315 0.99696 1.20362 0.92144 0.95643 0.86163 0.92969 1.42453 1.78271 1.10720 1.04823 1.19220 1.37014 0.93836 0.87070 0.91121 1.24748 1.02009 0.95995 0.98102 1.69660 1.50823 1.08559 1.28888 0.86180 0.77276 0.78799 0.83855 1.21748 1.21776 1.20766 1.21371 0.99153 0.92906 0.83432 0.89212 1.22144 1.01526 0.95746 1.02365 1.46163 1.25688 1.56447 1.08243 1.18019 0.84500 0.80033 0.83027 1.90789 1.22210 1.42920 1.85499 1.19748 0.96408 1.02856 0.93829 1.21103 0.94348 0.95993 0.98443 1.20346 1.01742 1.02928 0.88857 1.19144 0.93754 0.96319 0.88248 1.18716 0.93755 1.00875 0.87106 1.20483 1.00824 0.97161 0.88787 1.86363 1.37124 1.86362 1.12050 1.23649 0.96915 0.97576 0.87441 1.23679 0.95030 0.97763 0.89150 1.86283 1.37249 1.76558 1.21832 0.92728 0.92323 0.94979 0.77747 0.93441 0.93019 0.90438 0.92505 0.76615 0.84415 0.84066 0.83310 0.85881 0.90339 0.90207 0.85879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.77 9.01 37.16 0.33 -2.44 16 2 C 0.17 3.20 2.93 -67.94 -0.20 3.00 16 3 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 4 N -0.72 -17.52 5.03 -53.43 -0.27 -17.79 16 5 C -0.24 -6.54 9.93 -15.06 -0.15 -6.68 16 6 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -27.85 13.06 55.49 0.72 -27.13 16 9 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 10 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 13 C 0.14 2.35 2.62 -67.93 -0.18 2.18 16 14 H 0.09 1.79 7.58 -51.93 -0.39 1.39 16 15 C -0.16 -2.72 9.00 37.16 0.33 -2.39 16 16 N -0.71 -10.09 4.94 -54.82 -0.27 -10.37 16 17 C 0.56 8.52 7.73 -12.43 -0.10 8.42 16 18 O -0.54 -10.17 16.00 5.30 0.08 -10.09 16 19 C -0.12 -1.56 5.87 -104.99 -0.62 -2.18 16 20 C -0.08 -0.78 9.53 -39.22 -0.37 -1.16 16 21 C -0.12 -1.12 9.94 -39.48 -0.39 -1.51 16 22 C 0.07 0.73 6.50 -38.92 -0.25 0.48 16 23 C 0.04 0.46 6.49 -39.18 -0.25 0.20 16 24 C -0.05 -0.67 9.50 -39.03 -0.37 -1.04 16 25 O -0.30 -3.11 10.42 -32.96 -0.34 -3.46 16 26 C 0.02 0.12 7.26 37.40 0.27 0.39 16 27 C 0.02 0.10 7.26 37.40 0.27 0.38 16 28 O -0.31 -2.74 10.41 -32.39 -0.34 -3.08 16 29 H 0.05 0.91 6.57 -51.93 -0.34 0.57 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.03 0.40 6.29 -51.93 -0.33 0.07 16 32 H 0.39 9.97 5.77 -40.82 -0.24 9.73 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.08 1.47 6.29 -51.93 -0.33 1.14 16 36 H 0.06 0.89 6.56 -51.94 -0.34 0.55 16 37 H 0.40 4.53 4.60 -40.82 -0.19 4.35 16 38 H 0.14 1.03 6.39 -52.49 -0.34 0.69 16 39 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 40 H 0.15 1.96 7.64 -52.49 -0.40 1.56 16 41 H 0.12 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.12 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 358.61 15.07 5.40 5.40 Total: -1.00 -33.67 358.61 -7.61 -41.28 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -5.81 Total: 10.81 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -1.77 Total: -2.79 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: 0.18 Total: -55.28 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.60 Total: -16.63 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.67 -7.61 -41.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755271822.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.511 kcal (2) G-P(sol) polarization free energy of solvation -33.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds