Wall clock time and date at job start Tue Mar 31 2020 13:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46802 * 2 1 4 4 N 1.46493 * 109.47099 * 120.00372 * 2 1 3 5 5 C 1.36945 * 119.99892 * 274.99565 * 4 2 1 6 6 H 1.08000 * 119.99422 * 359.72792 * 5 4 2 7 7 C 1.38811 * 120.00031 * 179.72716 * 5 4 2 8 8 N 1.31616 * 119.99707 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99814 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47112 * 89.99774 * 9 7 5 11 11 H 1.48498 * 109.47011 * 210.00042 * 9 7 5 12 12 H 1.48499 * 109.47134 * 329.99663 * 9 7 5 13 13 C 1.52996 * 109.46775 * 240.00268 * 2 1 3 14 14 H 1.09000 * 109.47178 * 174.99941 * 13 2 1 15 15 C 1.53001 * 109.47260 * 294.99936 * 13 2 1 16 16 N 1.46503 * 109.47576 * 54.99839 * 13 2 1 17 17 C 1.34783 * 119.99957 * 154.99787 * 16 13 2 18 18 O 1.21578 * 119.99918 * 0.02562 * 17 16 13 19 19 C 1.47608 * 119.99422 * 180.02562 * 17 16 13 20 20 C 1.39696 * 120.10122 * 359.72557 * 19 17 16 21 21 C 1.37731 * 119.96607 * 179.77162 * 20 19 17 22 22 C 1.39004 * 120.26823 * 0.56949 * 21 20 19 23 23 C 1.39263 * 120.04672 * 359.62379 * 22 21 20 24 24 C 1.38293 * 119.95798 * 0.11397 * 23 22 21 25 25 O 1.36148 * 120.76333 * 180.26727 * 23 22 21 26 26 C 1.43167 * 116.70700 * 342.85628 * 25 23 22 27 27 C 1.53464 * 108.23825 * 46.14378 * 26 25 23 28 28 O 1.35970 * 119.24146 * 179.53443 * 22 21 20 29 29 H 1.09005 * 109.47224 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46783 * 300.00069 * 1 2 3 31 31 H 1.09003 * 109.47308 * 59.99705 * 1 2 3 32 32 H 0.97000 * 120.00738 * 94.73029 * 4 2 1 33 33 H 0.97004 * 119.99151 * 179.97438 * 8 7 5 34 34 H 1.08999 * 109.47094 * 180.02562 * 15 13 2 35 35 H 1.09002 * 109.46895 * 299.99893 * 15 13 2 36 36 H 1.08988 * 109.47377 * 59.99776 * 15 13 2 37 37 H 0.96997 * 119.99683 * 335.00272 * 16 13 2 38 38 H 1.07997 * 120.01740 * 0.02562 * 20 19 17 39 39 H 1.08003 * 119.86343 * 180.29836 * 21 20 19 40 40 H 1.07994 * 120.02083 * 179.97438 * 24 23 22 41 41 H 1.08998 * 109.70820 * 165.82934 * 26 25 23 42 42 H 1.08998 * 109.70960 * 286.45623 * 26 25 23 43 43 H 1.08998 * 109.70886 * 59.87285 * 27 26 25 44 44 H 1.08997 * 109.71193 * 180.49729 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1492 -0.0075 2.3757 6 1 1.8965 1.0414 2.4231 7 6 2.6065 -0.6633 3.5105 8 7 2.9148 -1.9415 3.4525 9 14 2.7843 0.2684 5.1197 10 1 1.5143 0.1823 5.8845 11 1 3.8846 -0.3287 5.9185 12 1 3.0954 1.6924 4.8355 13 6 2.0399 -0.7212 -1.2493 14 1 3.1262 -0.6443 -1.2952 15 6 1.6351 -2.1954 -1.1881 16 7 1.4557 -0.1036 -2.4424 17 6 2.0912 -0.1937 -3.6276 18 8 3.1489 -0.7879 -3.7066 19 6 1.5027 0.4290 -4.8296 20 6 0.2847 1.1074 -4.7423 21 6 -0.2595 1.6915 -5.8646 22 6 0.3926 1.5992 -7.0887 23 6 1.6052 0.9209 -7.1833 24 6 2.1595 0.3369 -6.0589 25 8 2.2591 0.8262 -8.3737 26 6 1.4944 1.1038 -9.5518 27 6 0.6904 2.3885 -9.3108 28 8 -0.1681 2.1754 -8.1851 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 2.2453 -1.6328 1.1535 33 1 3.2347 -2.3996 4.2454 34 1 1.9988 -2.7093 -2.0779 35 1 2.0698 -2.6550 -0.3004 36 1 0.5489 -2.2724 -1.1421 37 1 0.6117 0.3702 -2.3794 38 1 -0.2280 1.1773 -3.7943 39 1 -1.1990 2.2196 -5.7942 40 1 3.0995 -0.1897 -6.1312 41 1 2.1641 1.2430 -10.4004 42 1 0.8138 0.2762 -9.7517 43 1 1.3707 3.2144 -9.1031 44 1 0.0911 2.6179 -10.1918 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755271822.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:02 Heat of formation + Delta-G solvation = -89.315871 kcal Electronic energy + Delta-G solvation = -26496.618450 eV Core-core repulsion = 22607.255219 eV Total energy + Delta-G solvation = -3889.363231 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.35279 -41.12012 -38.81390 -38.34198 -38.01637 -35.64015 -33.70431 -32.37093 -31.83205 -30.97123 -29.80965 -29.40635 -26.24615 -26.11736 -25.19929 -23.91907 -22.98106 -21.28355 -20.74576 -19.92124 -19.40979 -18.90224 -18.30511 -17.44461 -16.98276 -16.61557 -16.51904 -16.12901 -15.98637 -15.83953 -15.47325 -15.32669 -15.19846 -14.93784 -14.85033 -14.55924 -14.30987 -13.93945 -13.58036 -13.44926 -13.07995 -12.97369 -12.88861 -12.78733 -12.62413 -12.23843 -12.11719 -12.02459 -11.99300 -11.65212 -11.58977 -11.54004 -11.07275 -10.93291 -10.17108 -9.78726 -9.22630 -9.01265 -7.91818 -5.20485 -0.31595 0.19070 1.49381 1.50984 1.59102 1.68137 1.89947 2.07834 2.31339 2.60067 2.71523 3.18646 3.42056 3.58020 3.65485 3.87105 3.94030 3.99577 4.01902 4.06730 4.09524 4.14566 4.29101 4.34836 4.53823 4.58575 4.62549 4.69552 4.73812 4.89341 4.94520 4.98705 5.00036 5.06670 5.18311 5.22741 5.27852 5.38353 5.50121 5.56912 5.66875 5.81499 6.29362 6.30336 6.53076 7.18939 7.36913 8.11489 8.34341 9.31771 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.032760 B = 0.002278 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.507253 B =12287.613032 C =12638.075983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.165 3.835 3 H 0.049 0.951 4 N -0.734 5.734 5 C -0.236 4.236 6 H 0.079 0.921 7 C -0.078 4.078 8 N -0.970 5.970 9 Si 0.972 3.028 10 H -0.286 1.286 11 H -0.300 1.300 12 H -0.270 1.270 13 C 0.149 3.851 14 H 0.057 0.943 15 C -0.150 4.150 16 N -0.697 5.697 17 C 0.558 3.442 18 O -0.583 6.583 19 C -0.141 4.141 20 C -0.068 4.068 21 C -0.116 4.116 22 C 0.074 3.926 23 C 0.033 3.967 24 C -0.072 4.072 25 O -0.326 6.326 26 C 0.011 3.989 27 C 0.014 3.986 28 O -0.312 6.312 29 H 0.052 0.948 30 H 0.045 0.955 31 H 0.079 0.921 32 H 0.376 0.624 33 H 0.250 0.750 34 H 0.049 0.951 35 H 0.053 0.947 36 H 0.075 0.925 37 H 0.413 0.587 38 H 0.166 0.834 39 H 0.171 0.829 40 H 0.129 0.871 41 H 0.153 0.847 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.671 10.158 -29.051 32.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.056 3.944 3 H 0.067 0.933 4 N -0.377 5.377 5 C -0.368 4.368 6 H 0.096 0.904 7 C -0.270 4.270 8 N -0.621 5.621 9 Si 0.802 3.198 10 H -0.213 1.213 11 H -0.227 1.227 12 H -0.195 1.195 13 C 0.043 3.957 14 H 0.076 0.924 15 C -0.209 4.209 16 N -0.351 5.351 17 C 0.347 3.653 18 O -0.464 6.464 19 C -0.145 4.145 20 C -0.087 4.087 21 C -0.135 4.135 22 C 0.028 3.972 23 C -0.012 4.012 24 C -0.091 4.091 25 O -0.242 6.242 26 C -0.063 4.063 27 C -0.060 4.060 28 O -0.226 6.226 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.097 0.903 32 H 0.210 0.790 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.254 0.746 38 H 0.184 0.816 39 H 0.188 0.812 40 H 0.147 0.853 41 H 0.171 0.829 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -9.928 9.916 -29.039 32.251 hybrid contribution 0.447 -0.164 0.982 1.092 sum -9.481 9.752 -28.056 31.179 Atomic orbital electron populations 1.22381 0.96363 1.01786 1.01395 1.20539 0.94066 0.94894 0.84871 0.93309 1.42662 1.78732 1.10459 1.05821 1.19615 1.34982 0.94203 0.87960 0.90351 1.25548 1.03056 0.96894 1.01477 1.69822 1.52807 1.10133 1.29300 0.85154 0.76805 0.77999 0.79883 1.21338 1.22658 1.19476 1.20938 0.97460 0.93197 0.84065 0.92438 1.22038 1.02486 0.95268 1.01089 1.45866 1.26084 1.56197 1.06960 1.18461 0.83807 0.79216 0.83804 1.90767 1.24364 1.45052 1.86189 1.19497 0.97942 1.04716 0.92297 1.21347 0.92907 0.94440 0.99957 1.20696 1.02432 1.02264 0.88075 1.19354 0.93072 0.95544 0.89278 1.18720 0.94262 1.01046 0.87220 1.20417 1.00643 0.98195 0.89875 1.86330 1.38470 1.86557 1.12794 1.24028 0.97651 0.98004 0.86625 1.24023 0.95433 0.97429 0.89134 1.86277 1.38113 1.76030 1.22181 0.92882 0.93622 0.90273 0.78969 0.94139 0.93161 0.92809 0.90587 0.74625 0.81628 0.81174 0.85334 0.82901 0.89942 0.89908 0.82289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.83 9.01 71.98 0.65 -4.18 16 2 C 0.17 6.19 2.93 44.99 0.13 6.32 16 3 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 4 N -0.73 -36.17 5.03 -322.95 -1.63 -37.80 16 5 C -0.24 -12.84 9.93 84.03 0.83 -12.00 16 6 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 7 C -0.08 -4.43 5.50 84.86 0.47 -3.97 16 8 N -0.97 -59.46 13.06 21.65 0.28 -59.18 16 9 Si 0.97 46.07 29.55 68.60 2.03 48.09 16 10 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 11 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 13 C 0.15 5.18 2.62 44.99 0.12 5.30 16 14 H 0.06 2.39 7.58 -2.39 -0.02 2.37 16 15 C -0.15 -5.18 9.00 71.98 0.65 -4.53 16 16 N -0.70 -18.88 4.94 -445.63 -2.20 -21.08 16 17 C 0.56 17.10 7.73 86.72 0.67 17.77 16 18 O -0.58 -23.15 16.00 -3.96 -0.06 -23.22 16 19 C -0.14 -3.43 5.87 -20.11 -0.12 -3.55 16 20 C -0.07 -1.13 9.53 22.50 0.21 -0.92 16 21 C -0.12 -1.77 9.94 22.33 0.22 -1.55 16 22 C 0.07 1.36 6.50 22.70 0.15 1.51 16 23 C 0.03 0.72 6.49 22.53 0.15 0.86 16 24 C -0.07 -1.84 9.50 22.63 0.22 -1.63 16 25 O -0.33 -6.49 10.42 -83.05 -0.86 -7.36 16 26 C 0.01 0.11 7.26 72.14 0.52 0.63 16 27 C 0.01 0.11 7.26 72.14 0.52 0.64 16 28 O -0.31 -4.69 10.41 -81.02 -0.84 -5.53 16 29 H 0.05 1.64 6.57 -2.38 -0.02 1.62 16 30 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.08 1.63 6.29 -2.39 -0.02 1.62 16 32 H 0.38 20.00 5.77 -92.71 -0.54 19.46 16 33 H 0.25 14.93 8.31 -92.71 -0.77 14.15 16 34 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.05 2.11 6.29 -2.39 -0.02 2.10 16 36 H 0.08 2.29 6.56 -2.39 -0.02 2.27 16 37 H 0.41 8.12 4.60 -92.71 -0.43 7.69 16 38 H 0.17 1.71 6.39 -2.91 -0.02 1.69 16 39 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 40 H 0.13 3.71 7.64 -2.91 -0.02 3.69 16 41 H 0.15 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.08 0.72 8.14 -2.39 -0.02 0.71 16 43 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.16 0.08 8.14 -2.39 -0.02 0.06 16 Total: -1.00 -76.08 358.61 2.19 -73.89 By element: Atomic # 1 Polarization: 31.39 SS G_CDS: 0.09 Total: 31.48 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: 5.39 Total: 0.70 kcal Atomic # 7 Polarization: -114.51 SS G_CDS: -3.54 Total: -118.05 kcal Atomic # 8 Polarization: -34.34 SS G_CDS: -1.77 Total: -36.11 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Total: -76.08 2.19 -73.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755271822.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.428 kcal (2) G-P(sol) polarization free energy of solvation -76.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds