Wall clock time and date at job start Tue Mar 31 2020 13:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46901 * 2 1 4 4 N 1.46493 * 109.46887 * 119.99683 * 2 1 3 5 5 C 1.36936 * 120.00314 * 274.99849 * 4 2 1 6 6 H 1.08001 * 120.00159 * 0.02562 * 5 4 2 7 7 C 1.38811 * 119.99842 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99540 * 179.72505 * 7 5 4 9 9 Si 1.86800 * 120.00451 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72270 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72118 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72153 * 9 7 5 13 13 C 1.52993 * 109.47133 * 240.00061 * 2 1 3 14 14 H 1.09004 * 109.47177 * 299.99770 * 13 2 1 15 15 C 1.52997 * 109.47100 * 180.02562 * 13 2 1 16 16 N 1.46502 * 109.47550 * 59.99564 * 13 2 1 17 17 C 1.34770 * 120.00583 * 204.99855 * 16 13 2 18 18 O 1.21593 * 119.99786 * 0.02562 * 17 16 13 19 19 C 1.47603 * 120.00479 * 180.02562 * 17 16 13 20 20 C 1.39703 * 120.09838 * 359.72573 * 19 17 16 21 21 C 1.37715 * 119.97070 * 179.76908 * 20 19 17 22 22 C 1.39006 * 120.26906 * 0.57463 * 21 20 19 23 23 C 1.39261 * 120.04835 * 359.61669 * 22 21 20 24 24 C 1.38290 * 119.95404 * 0.12557 * 23 22 21 25 25 O 1.36142 * 120.76655 * 180.26342 * 23 22 21 26 26 C 1.43165 * 116.71254 * 342.86755 * 25 23 22 27 27 C 1.53465 * 108.23557 * 46.13254 * 26 25 23 28 28 O 1.35971 * 119.24518 * 179.53269 * 22 21 20 29 29 H 1.08995 * 109.47185 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47326 * 300.00178 * 1 2 3 31 31 H 1.09003 * 109.47067 * 60.00275 * 1 2 3 32 32 H 0.97000 * 120.00040 * 94.99981 * 4 2 1 33 33 H 0.96999 * 119.99889 * 180.27497 * 8 7 5 34 34 H 1.08994 * 109.46974 * 299.99292 * 15 13 2 35 35 H 1.08994 * 109.47214 * 59.99881 * 15 13 2 36 36 H 1.09004 * 109.47023 * 180.02562 * 15 13 2 37 37 H 0.97000 * 119.99259 * 25.00521 * 16 13 2 38 38 H 1.08002 * 120.01409 * 0.02668 * 20 19 17 39 39 H 1.08001 * 119.86766 * 180.30222 * 21 20 19 40 40 H 1.07999 * 120.02340 * 179.97438 * 24 23 22 41 41 H 1.08995 * 109.71172 * 165.82740 * 26 25 23 42 42 H 1.09008 * 109.70892 * 286.45373 * 26 25 23 43 43 H 1.09005 * 109.70669 * 59.87811 * 27 26 25 44 44 H 1.09004 * 109.70746 * 180.50050 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0074 2.3757 6 1 1.8919 1.0404 2.4243 7 6 2.6123 -0.6617 3.5090 8 7 2.7431 -0.0037 4.6414 9 14 3.0578 -2.4738 3.4249 10 1 1.8628 -3.2929 3.7507 11 1 3.5267 -2.8052 2.0554 12 1 4.1381 -2.7639 4.4016 13 6 2.0400 -0.7212 -1.2492 14 1 1.6767 -1.7489 -1.2492 15 6 3.5700 -0.7218 -1.2489 16 7 1.5517 -0.0307 -2.4454 17 6 1.4230 -0.7030 -3.6064 18 8 1.7118 -1.8829 -3.6608 19 6 0.9315 -0.0071 -4.8117 20 6 0.5936 1.3470 -4.7501 21 6 0.1398 1.9948 -5.8775 22 6 0.0046 1.3038 -7.0760 23 6 0.3359 -0.0471 -7.1433 24 6 0.7972 -0.7019 -6.0160 25 8 0.2143 -0.7367 -8.3108 26 6 -0.6006 -0.1428 -9.3271 27 6 -0.2207 1.3396 -9.4419 28 8 -0.4544 1.9617 -8.1739 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 2.2490 -1.6317 1.1527 33 1 3.0706 -0.4598 5.4323 34 1 3.9337 0.3057 -1.2487 35 1 3.9330 -1.2358 -0.3589 36 1 3.9333 -1.2352 -2.1391 37 1 1.3210 0.9105 -2.4018 38 1 0.6922 1.8866 -3.8198 39 1 -0.1163 3.0429 -5.8291 40 1 1.0541 -1.7497 -6.0668 41 1 -0.4233 -0.6427 -10.2793 42 1 -1.6522 -0.2327 -9.0544 43 1 0.8327 1.4297 -9.7070 44 1 -0.8346 1.8184 -10.2049 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755271823.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:07 Heat of formation + Delta-G solvation = -66.228293 kcal Electronic energy + Delta-G solvation = -26556.198108 eV Core-core repulsion = 22667.836029 eV Total energy + Delta-G solvation = -3888.362078 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.68301 -39.99585 -37.76731 -37.69866 -36.72424 -34.10353 -32.17411 -31.47886 -31.07466 -29.94592 -28.89458 -28.61301 -25.50079 -24.01375 -23.71708 -22.58103 -21.87112 -20.29792 -20.17041 -19.14705 -18.17399 -17.76953 -17.63537 -16.50366 -16.00687 -15.82873 -15.41220 -14.96322 -14.80237 -14.64935 -14.29384 -14.20808 -14.08850 -13.86020 -13.71782 -13.42201 -12.93589 -12.85297 -12.50210 -12.25867 -12.14311 -11.84884 -11.55166 -11.52732 -11.34655 -11.08854 -10.92965 -10.91189 -10.77211 -10.30126 -9.95796 -9.89075 -9.59756 -9.10624 -9.03032 -8.84809 -8.47656 -7.30821 -5.78649 -3.15008 0.52107 0.94139 2.46036 2.71092 2.77591 3.25698 3.38697 3.42585 3.47062 3.60439 3.71570 4.16756 4.30563 4.39879 4.58441 4.59541 4.65813 4.78216 4.93871 4.94091 5.01781 5.17611 5.37585 5.42294 5.44745 5.63512 5.69391 5.73378 5.75124 5.95808 6.01340 6.07473 6.12227 6.26559 6.29669 6.38916 6.43952 6.52700 6.68494 6.80836 6.93793 6.95866 7.58997 7.95568 8.26958 8.39776 9.17323 9.89971 10.08894 11.39302 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.034275 B = 0.002398 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.735100 B =11671.730556 C =12131.336133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.174 3.826 3 H 0.060 0.940 4 N -0.742 5.742 5 C -0.242 4.242 6 H 0.091 0.909 7 C 0.006 3.994 8 N -0.933 5.933 9 Si 0.882 3.118 10 H -0.284 1.284 11 H -0.275 1.275 12 H -0.291 1.291 13 C 0.133 3.867 14 H 0.086 0.914 15 C -0.155 4.155 16 N -0.710 5.710 17 C 0.560 3.440 18 O -0.538 6.538 19 C -0.126 4.126 20 C -0.079 4.079 21 C -0.120 4.120 22 C 0.072 3.928 23 C 0.040 3.960 24 C -0.053 4.053 25 O -0.305 6.305 26 C 0.020 3.980 27 C 0.019 3.981 28 O -0.305 6.305 29 H 0.046 0.954 30 H 0.060 0.940 31 H 0.039 0.961 32 H 0.362 0.638 33 H 0.260 0.740 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.050 0.950 37 H 0.398 0.602 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.149 0.851 41 H 0.123 0.877 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.877 4.417 -30.279 31.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.063 3.937 3 H 0.078 0.922 4 N -0.386 5.386 5 C -0.372 4.372 6 H 0.109 0.891 7 C -0.190 4.190 8 N -0.580 5.580 9 Si 0.712 3.288 10 H -0.211 1.211 11 H -0.201 1.201 12 H -0.217 1.217 13 C 0.028 3.972 14 H 0.104 0.896 15 C -0.213 4.213 16 N -0.361 5.361 17 C 0.347 3.653 18 O -0.416 6.416 19 C -0.130 4.130 20 C -0.098 4.098 21 C -0.139 4.139 22 C 0.026 3.974 23 C -0.005 4.005 24 C -0.073 4.073 25 O -0.219 6.219 26 C -0.056 4.056 27 C -0.056 4.056 28 O -0.219 6.219 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.196 0.804 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.069 0.931 37 H 0.234 0.766 38 H 0.157 0.843 39 H 0.160 0.840 40 H 0.166 0.834 41 H 0.141 0.859 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.660 3.746 -30.152 31.105 hybrid contribution 0.093 -0.792 -0.147 0.810 sum -6.567 2.954 -30.299 31.143 Atomic orbital electron populations 1.22424 0.98473 1.01234 1.00414 1.20361 0.92331 0.95876 0.85093 0.92230 1.42651 1.79774 1.09491 1.06661 1.19007 1.37273 0.95578 0.85319 0.89131 1.24654 1.01284 0.97496 0.95551 1.69698 1.52343 1.35563 1.00413 0.86589 0.78193 0.86799 0.77190 1.21076 1.20139 1.21747 1.21386 0.94531 0.97642 0.83643 0.89630 1.22074 0.94846 1.02219 1.02177 1.45933 1.66653 1.13990 1.09542 1.17988 0.77907 0.86497 0.82900 1.90788 1.50392 1.15470 1.84934 1.19710 1.05027 0.94241 0.93975 1.21111 0.97093 0.93251 0.98331 1.20354 1.02869 1.00675 0.89963 1.19156 0.99964 0.89628 0.88619 1.18711 1.04715 0.89451 0.87605 1.20472 0.97592 1.00978 0.88213 1.86358 1.67162 1.46331 1.22073 1.23655 0.95505 0.94079 0.92351 1.23683 1.03400 0.93896 0.84640 1.86287 1.75384 1.47038 1.13175 0.93451 0.92098 0.94208 0.80432 0.93032 0.92543 0.90639 0.93129 0.76633 0.84296 0.84016 0.83368 0.85868 0.90309 0.90209 0.85848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.76 9.33 37.16 0.35 -2.42 16 2 C 0.17 3.12 2.52 -67.93 -0.17 2.95 16 3 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 4 N -0.74 -16.83 4.23 -53.43 -0.23 -17.06 16 5 C -0.24 -6.57 10.41 -15.06 -0.16 -6.73 16 6 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 7 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 8 N -0.93 -28.84 13.97 55.49 0.78 -28.06 16 9 Si 0.88 21.97 27.74 -169.99 -4.72 17.25 16 10 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.28 -6.45 6.51 56.52 0.37 -6.09 16 12 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 13 C 0.13 2.14 2.20 -67.93 -0.15 1.99 16 14 H 0.09 1.53 7.58 -51.93 -0.39 1.14 16 15 C -0.15 -2.53 9.33 37.16 0.35 -2.18 16 16 N -0.71 -9.33 4.33 -54.83 -0.24 -9.57 16 17 C 0.56 8.04 7.73 -12.44 -0.10 7.95 16 18 O -0.54 -9.67 16.00 5.28 0.08 -9.58 16 19 C -0.13 -1.49 5.87 -104.99 -0.62 -2.11 16 20 C -0.08 -0.73 9.53 -39.23 -0.37 -1.10 16 21 C -0.12 -1.07 9.94 -39.49 -0.39 -1.46 16 22 C 0.07 0.72 6.51 -38.92 -0.25 0.47 16 23 C 0.04 0.44 6.49 -39.18 -0.25 0.18 16 24 C -0.05 -0.64 9.50 -39.03 -0.37 -1.01 16 25 O -0.30 -3.01 10.41 -32.95 -0.34 -3.35 16 26 C 0.02 0.11 7.26 37.40 0.27 0.38 16 27 C 0.02 0.10 7.26 37.40 0.27 0.37 16 28 O -0.30 -2.66 10.41 -32.40 -0.34 -3.00 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.04 0.54 7.45 -51.93 -0.39 0.15 16 32 H 0.36 8.27 5.44 -40.82 -0.22 8.05 16 33 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 1.37 7.44 -51.93 -0.39 0.98 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.40 4.12 6.41 -40.82 -0.26 3.85 16 38 H 0.14 0.94 6.39 -52.49 -0.34 0.61 16 39 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.15 1.87 7.64 -52.49 -0.40 1.47 16 41 H 0.12 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 43 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.12 0.26 8.14 -51.93 -0.42 -0.17 16 LS Contribution 363.19 15.07 5.47 5.47 Total: -1.00 -34.29 363.19 -7.42 -41.71 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -6.20 Total: 8.82 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -1.69 Total: -2.64 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: 0.31 Total: -54.69 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.60 Total: -15.94 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.72 Total: 17.25 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.29 -7.42 -41.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755271823.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.515 kcal (2) G-P(sol) polarization free energy of solvation -34.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds