Wall clock time and date at job start Tue Mar 31 2020 13:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47308 * 2 1 4 4 C 1.53001 * 109.47020 * 119.99848 * 2 1 3 5 5 N 1.46495 * 109.47617 * 175.00026 * 4 2 1 6 6 C 1.34781 * 120.00512 * 180.02562 * 5 4 2 7 7 O 1.21585 * 119.99700 * 359.97438 * 6 5 4 8 8 C 1.47598 * 119.99967 * 180.02562 * 6 5 4 9 9 C 1.39708 * 120.10363 * 359.72204 * 8 6 5 10 10 C 1.37720 * 119.96830 * 179.82218 * 9 8 6 11 11 C 1.39002 * 120.26951 * 0.51572 * 10 9 8 12 12 C 1.39262 * 120.04674 * 359.65388 * 11 10 9 13 13 C 1.38280 * 119.96120 * 0.11332 * 12 11 10 14 14 O 1.36145 * 120.76258 * 180.25818 * 12 11 10 15 15 C 1.43173 * 116.71283 * 342.86034 * 14 12 11 16 16 C 1.53469 * 108.23248 * 46.13791 * 15 14 12 17 17 O 1.35969 * 119.23994 * 179.55861 * 11 10 9 18 18 N 1.46494 * 109.47241 * 239.99356 * 2 1 3 19 19 C 1.46499 * 120.00393 * 300.00444 * 18 2 1 20 20 C 1.36946 * 119.99842 * 120.00409 * 18 2 1 21 21 H 1.07998 * 119.99814 * 23.09616 * 20 18 2 22 22 C 1.38810 * 119.99775 * 203.10194 * 20 18 2 23 23 N 1.31621 * 120.00602 * 12.99814 * 22 20 18 24 24 Si 1.86799 * 119.99729 * 193.00299 * 22 20 18 25 25 H 1.48498 * 109.47168 * 359.97438 * 24 22 20 26 26 H 1.48506 * 109.47485 * 119.99895 * 24 22 20 27 27 H 1.48498 * 109.47100 * 239.99640 * 24 22 20 28 28 H 1.08998 * 109.46815 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47082 * 300.00665 * 1 2 3 30 30 H 1.08998 * 109.46742 * 60.00441 * 1 2 3 31 31 H 1.09003 * 109.46854 * 295.00292 * 4 2 1 32 32 H 1.09000 * 109.47490 * 54.99428 * 4 2 1 33 33 H 0.96998 * 119.99552 * 359.97438 * 5 4 2 34 34 H 1.08002 * 120.01131 * 0.06827 * 9 8 6 35 35 H 1.07994 * 119.86361 * 180.26931 * 10 9 8 36 36 H 1.07997 * 120.02540 * 179.97438 * 13 12 11 37 37 H 1.08996 * 109.71143 * 165.82167 * 15 14 12 38 38 H 1.08998 * 109.70715 * 286.45604 * 15 14 12 39 39 H 1.09004 * 109.71040 * 59.87457 * 16 15 14 40 40 H 1.08997 * 109.70664 * 180.49615 * 16 15 14 41 41 H 1.09003 * 109.47215 * 95.12786 * 19 18 2 42 42 H 1.09004 * 109.47101 * 215.12466 * 19 18 2 43 43 H 1.09003 * 109.46802 * 335.12640 * 19 18 2 44 44 H 0.96998 * 120.00397 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1730 -1.4292 2.1909 7 8 3.5683 -1.8853 3.1420 8 6 5.6440 -1.5346 2.1321 9 6 6.3405 -1.0155 1.0379 10 6 7.7134 -1.1121 0.9877 11 6 8.4102 -1.7343 2.0170 12 6 7.7216 -2.2570 3.1088 13 6 6.3435 -2.1589 3.1675 14 8 8.3898 -2.8647 4.1275 15 6 9.7356 -3.2739 3.8608 16 6 10.4593 -2.1166 3.1592 17 8 9.7647 -1.8260 1.9416 18 7 2.0184 -0.6907 -1.1960 19 6 1.6645 -2.0933 -1.4278 20 6 2.8058 -0.0253 -2.0975 21 1 3.3702 0.8409 -1.7853 22 6 2.8783 -0.4641 -3.4124 23 7 2.0110 -1.3469 -3.8605 24 14 4.2070 0.1983 -4.5461 25 1 5.0491 1.1720 -3.8058 26 1 5.0528 -0.9239 -5.0262 27 1 3.5749 0.8739 -5.7077 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.7516 -0.1582 2.1370 32 1 1.6053 -1.7197 1.2953 33 1 3.9823 -0.4629 0.4318 34 1 5.8029 -0.5351 0.2338 35 1 8.2505 -0.7064 0.1431 36 1 5.8084 -2.5643 4.0135 37 1 10.2408 -3.5094 4.7975 38 1 9.7317 -4.1511 3.2139 39 1 10.4563 -1.2369 3.8030 40 1 11.4862 -2.4063 2.9366 41 1 0.7891 -2.1449 -2.0754 42 1 2.5003 -2.6048 -1.9053 43 1 1.4406 -2.5737 -0.4753 44 1 2.0619 -1.6538 -4.7792 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755326670.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:30 Heat of formation + Delta-G solvation = -56.344260 kcal Electronic energy + Delta-G solvation = -27156.623001 eV Core-core repulsion = 23268.689526 eV Total energy + Delta-G solvation = -3887.933475 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.44659 -39.55768 -37.47911 -37.39197 -36.57526 -33.82882 -32.18752 -31.33180 -30.79858 -29.42206 -28.74786 -26.03037 -25.92435 -25.02155 -23.23702 -22.74419 -21.90520 -19.96663 -19.46719 -18.79184 -17.74076 -17.40599 -16.93958 -16.36231 -15.69756 -15.53915 -15.32215 -15.18350 -14.66480 -14.53188 -13.99635 -13.97804 -13.94633 -13.89229 -13.38165 -12.82499 -12.77599 -12.57262 -12.32181 -12.02475 -11.90457 -11.43585 -11.35380 -11.23603 -11.07950 -10.85312 -10.76227 -10.69432 -10.42019 -10.27559 -9.91520 -9.78272 -9.62446 -8.79729 -8.62189 -8.54862 -8.19673 -6.81418 -5.77151 -3.25280 0.80151 1.21966 2.70089 2.93473 3.04685 3.33325 3.39942 3.42513 3.68022 3.89886 3.91995 4.40370 4.43117 4.48550 4.57612 4.88360 4.96305 5.10070 5.12350 5.23582 5.28305 5.35587 5.41046 5.60722 5.69787 5.92102 5.98420 6.03279 6.11905 6.19977 6.27712 6.32403 6.40638 6.44667 6.66660 6.76392 6.85047 6.88092 7.04387 7.19557 7.37282 7.70136 7.77203 8.01899 8.34063 8.61555 9.17989 9.81348 10.31282 11.26781 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013717 B = 0.003669 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.742213 B = 7630.379163 C = 9244.354893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.157 3.843 3 H 0.069 0.931 4 C 0.106 3.894 5 N -0.698 5.698 6 C 0.555 3.445 7 O -0.554 6.554 8 C -0.125 4.125 9 C -0.073 4.073 10 C -0.120 4.120 11 C 0.070 3.930 12 C 0.036 3.964 13 C -0.054 4.054 14 O -0.306 6.306 15 C 0.020 3.980 16 C 0.020 3.980 17 O -0.305 6.305 18 N -0.594 5.594 19 C 0.164 3.836 20 C -0.263 4.263 21 H 0.069 0.931 22 C 0.007 3.993 23 N -0.901 5.901 24 Si 0.900 3.100 25 H -0.277 1.277 26 H -0.289 1.289 27 H -0.291 1.291 28 H 0.049 0.951 29 H 0.041 0.959 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.410 0.590 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.147 0.853 37 H 0.122 0.878 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.122 0.878 41 H 0.030 0.970 42 H 0.039 0.961 43 H -0.001 1.001 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.002 -0.806 13.288 19.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.048 3.952 3 H 0.087 0.913 4 C -0.019 4.019 5 N -0.349 5.349 6 C 0.342 3.658 7 O -0.434 6.434 8 C -0.128 4.128 9 C -0.092 4.092 10 C -0.138 4.138 11 C 0.025 3.975 12 C -0.009 4.009 13 C -0.074 4.074 14 O -0.221 6.221 15 C -0.056 4.056 16 C -0.056 4.056 17 O -0.219 6.219 18 N -0.317 5.317 19 C 0.019 3.981 20 C -0.393 4.393 21 H 0.087 0.913 22 C -0.192 4.192 23 N -0.545 5.545 24 Si 0.730 3.270 25 H -0.202 1.202 26 H -0.216 1.216 27 H -0.218 1.218 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.247 0.753 34 H 0.162 0.838 35 H 0.160 0.840 36 H 0.165 0.835 37 H 0.139 0.861 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.140 0.860 41 H 0.048 0.952 42 H 0.058 0.942 43 H 0.018 0.982 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 13.590 -1.218 13.775 19.389 hybrid contribution 1.099 0.305 -1.153 1.622 sum 14.689 -0.913 12.622 19.388 Atomic orbital electron populations 1.22182 0.97423 1.01400 1.00586 1.20632 0.92647 0.95521 0.86389 0.91316 1.21990 0.79186 1.01450 0.99322 1.45813 1.08480 1.57828 1.22785 1.18003 0.86454 0.78504 0.82846 1.90735 1.69811 1.48972 1.33867 1.19746 0.93740 1.03367 0.95944 1.21264 0.93256 0.97497 0.97223 1.20383 0.93659 1.00977 0.98803 1.19143 0.82785 0.99323 0.96276 1.18675 0.91947 1.00129 0.90115 1.20427 0.89749 0.98018 0.99208 1.86338 1.26495 1.74150 1.35075 1.23627 0.81733 0.96936 1.03264 1.23653 0.97038 0.98713 0.86191 1.86290 1.15727 1.86856 1.33041 1.43996 1.58235 1.08016 1.21464 1.20729 0.99772 0.83336 0.94216 1.19228 1.19017 1.11723 0.89307 0.91303 1.25029 0.98225 0.99386 0.96579 1.70079 1.34976 1.34071 1.15390 0.86262 0.81482 0.78203 0.81022 1.20230 1.21625 1.21793 0.93145 0.93953 0.92198 0.92282 0.91925 0.75258 0.83779 0.84048 0.83544 0.86052 0.90408 0.90353 0.86032 0.95191 0.94240 0.98210 0.93768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.20 37.16 0.34 -2.39 16 2 C 0.16 2.97 2.87 -67.93 -0.19 2.78 16 3 H 0.07 1.28 7.87 -51.93 -0.41 0.87 16 4 C 0.11 1.88 4.93 -4.04 -0.02 1.86 16 5 N -0.70 -12.20 5.34 -61.33 -0.33 -12.53 16 6 C 0.56 9.90 7.76 -12.44 -0.10 9.80 16 7 O -0.55 -11.31 16.34 5.29 0.09 -11.22 16 8 C -0.12 -1.93 5.87 -104.99 -0.62 -2.55 16 9 C -0.07 -1.02 9.53 -39.22 -0.37 -1.40 16 10 C -0.12 -1.55 9.94 -39.49 -0.39 -1.94 16 11 C 0.07 0.92 6.50 -38.92 -0.25 0.66 16 12 C 0.04 0.49 6.48 -39.19 -0.25 0.23 16 13 C -0.05 -0.81 9.50 -39.03 -0.37 -1.18 16 14 O -0.31 -3.67 10.41 -32.95 -0.34 -4.01 16 15 C 0.02 0.15 7.26 37.40 0.27 0.42 16 16 C 0.02 0.14 7.26 37.40 0.27 0.42 16 17 O -0.30 -3.49 10.41 -32.39 -0.34 -3.82 16 18 N -0.59 -13.59 2.28 -173.48 -0.40 -13.99 16 19 C 0.16 3.89 8.00 59.85 0.48 4.37 16 20 C -0.26 -6.58 9.31 -15.06 -0.14 -6.72 16 21 H 0.07 1.64 7.82 -52.49 -0.41 1.23 16 22 C 0.01 0.19 5.10 -17.43 -0.09 0.10 16 23 N -0.90 -25.22 10.72 55.49 0.59 -24.63 16 24 Si 0.90 20.65 29.57 -169.99 -5.03 15.62 16 25 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 28 H 0.05 0.90 7.67 -51.93 -0.40 0.50 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.06 1.19 6.86 -51.93 -0.36 0.83 16 33 H 0.41 7.07 5.91 -40.82 -0.24 6.83 16 34 H 0.14 1.93 6.39 -52.49 -0.34 1.59 16 35 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.15 2.19 7.64 -52.49 -0.40 1.79 16 37 H 0.12 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.12 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.03 0.78 7.34 -51.93 -0.38 0.40 16 42 H 0.04 1.01 7.35 -51.93 -0.38 0.63 16 43 H 0.00 -0.01 6.53 -51.93 -0.34 -0.35 16 44 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 360.67 15.07 5.44 5.44 Total: -1.00 -31.28 360.67 -7.92 -39.20 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -6.17 Total: 5.47 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -1.44 Total: 4.47 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: -0.13 Total: -51.14 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.59 Total: -19.06 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.03 Total: 15.62 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.28 -7.92 -39.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755326670.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.142 kcal (2) G-P(sol) polarization free energy of solvation -31.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds