Wall clock time and date at job start Tue Mar 31 2020 13:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47308 * 2 1 4 4 C 1.53001 * 109.47020 * 119.99848 * 2 1 3 5 5 N 1.46495 * 109.47617 * 175.00026 * 4 2 1 6 6 C 1.34781 * 120.00512 * 180.02562 * 5 4 2 7 7 O 1.21585 * 119.99700 * 359.97438 * 6 5 4 8 8 C 1.47598 * 119.99967 * 180.02562 * 6 5 4 9 9 C 1.39708 * 120.10363 * 359.72204 * 8 6 5 10 10 C 1.37720 * 119.96830 * 179.82218 * 9 8 6 11 11 C 1.39002 * 120.26951 * 0.51572 * 10 9 8 12 12 C 1.39262 * 120.04674 * 359.65388 * 11 10 9 13 13 C 1.38280 * 119.96120 * 0.11332 * 12 11 10 14 14 O 1.36145 * 120.76258 * 180.25818 * 12 11 10 15 15 C 1.43173 * 116.71283 * 342.86034 * 14 12 11 16 16 C 1.53469 * 108.23248 * 46.13791 * 15 14 12 17 17 O 1.35969 * 119.23994 * 179.55861 * 11 10 9 18 18 N 1.46494 * 109.47241 * 239.99356 * 2 1 3 19 19 C 1.46499 * 120.00393 * 300.00444 * 18 2 1 20 20 C 1.36946 * 119.99842 * 120.00409 * 18 2 1 21 21 H 1.07998 * 119.99814 * 23.09616 * 20 18 2 22 22 C 1.38810 * 119.99775 * 203.10194 * 20 18 2 23 23 N 1.31621 * 120.00602 * 12.99814 * 22 20 18 24 24 Si 1.86799 * 119.99729 * 193.00299 * 22 20 18 25 25 H 1.48498 * 109.47168 * 359.97438 * 24 22 20 26 26 H 1.48506 * 109.47485 * 119.99895 * 24 22 20 27 27 H 1.48498 * 109.47100 * 239.99640 * 24 22 20 28 28 H 1.08998 * 109.46815 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47082 * 300.00665 * 1 2 3 30 30 H 1.08998 * 109.46742 * 60.00441 * 1 2 3 31 31 H 1.09003 * 109.46854 * 295.00292 * 4 2 1 32 32 H 1.09000 * 109.47490 * 54.99428 * 4 2 1 33 33 H 0.96998 * 119.99552 * 359.97438 * 5 4 2 34 34 H 1.08002 * 120.01131 * 0.06827 * 9 8 6 35 35 H 1.07994 * 119.86361 * 180.26931 * 10 9 8 36 36 H 1.07997 * 120.02540 * 179.97438 * 13 12 11 37 37 H 1.08996 * 109.71143 * 165.82167 * 15 14 12 38 38 H 1.08998 * 109.70715 * 286.45604 * 15 14 12 39 39 H 1.09004 * 109.71040 * 59.87457 * 16 15 14 40 40 H 1.08997 * 109.70664 * 180.49615 * 16 15 14 41 41 H 1.09003 * 109.47215 * 95.12786 * 19 18 2 42 42 H 1.09004 * 109.47101 * 215.12466 * 19 18 2 43 43 H 1.09003 * 109.46802 * 335.12640 * 19 18 2 44 44 H 0.96998 * 120.00397 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1730 -1.4292 2.1909 7 8 3.5683 -1.8853 3.1420 8 6 5.6440 -1.5346 2.1321 9 6 6.3405 -1.0155 1.0379 10 6 7.7134 -1.1121 0.9877 11 6 8.4102 -1.7343 2.0170 12 6 7.7216 -2.2570 3.1088 13 6 6.3435 -2.1589 3.1675 14 8 8.3898 -2.8647 4.1275 15 6 9.7356 -3.2739 3.8608 16 6 10.4593 -2.1166 3.1592 17 8 9.7647 -1.8260 1.9416 18 7 2.0184 -0.6907 -1.1960 19 6 1.6645 -2.0933 -1.4278 20 6 2.8058 -0.0253 -2.0975 21 1 3.3702 0.8409 -1.7853 22 6 2.8783 -0.4641 -3.4124 23 7 2.0110 -1.3469 -3.8605 24 14 4.2070 0.1983 -4.5461 25 1 5.0491 1.1720 -3.8058 26 1 5.0528 -0.9239 -5.0262 27 1 3.5749 0.8739 -5.7077 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.7516 -0.1582 2.1370 32 1 1.6053 -1.7197 1.2953 33 1 3.9823 -0.4629 0.4318 34 1 5.8029 -0.5351 0.2338 35 1 8.2505 -0.7064 0.1431 36 1 5.8084 -2.5643 4.0135 37 1 10.2408 -3.5094 4.7975 38 1 9.7317 -4.1511 3.2139 39 1 10.4563 -1.2369 3.8030 40 1 11.4862 -2.4063 2.9366 41 1 0.7891 -2.1449 -2.0754 42 1 2.5003 -2.6048 -1.9053 43 1 1.4406 -2.5737 -0.4753 44 1 2.0619 -1.6538 -4.7792 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755326670.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:29 Heat of formation + Delta-G solvation = -76.059066 kcal Electronic energy + Delta-G solvation = -27157.477899 eV Core-core repulsion = 23268.689526 eV Total energy + Delta-G solvation = -3888.788373 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.34892 -40.88387 -38.65980 -38.34387 -38.06008 -35.45582 -33.81339 -32.29467 -31.83846 -31.12010 -29.72849 -27.98911 -27.22754 -25.93997 -24.94861 -23.95720 -22.91644 -21.17998 -20.93869 -19.83496 -18.89863 -18.70335 -18.30614 -17.49223 -17.12587 -16.89291 -16.51534 -16.15081 -16.00214 -15.63179 -15.43026 -15.33581 -14.94777 -14.90156 -14.59401 -14.46795 -14.33342 -13.90093 -13.62238 -13.45935 -13.04615 -12.86414 -12.83454 -12.65697 -12.51621 -12.24277 -12.22843 -12.03042 -12.02277 -11.75415 -11.54563 -11.47237 -11.05540 -10.59846 -10.03667 -9.78323 -9.22119 -8.74576 -7.75435 -5.24473 -0.31055 0.17652 1.51720 1.54503 1.62918 1.70772 1.94059 2.10953 2.42274 2.56278 2.72015 3.18266 3.40022 3.58426 3.65440 3.75668 3.92458 3.99496 4.04202 4.07676 4.16190 4.28516 4.38829 4.53065 4.58169 4.62953 4.69917 4.74798 4.78723 4.93153 4.96962 5.01334 5.06849 5.19399 5.25723 5.34960 5.39270 5.44550 5.59423 5.72787 5.77131 5.80510 6.28839 6.38570 6.61859 7.19276 7.23435 7.91920 8.38385 9.28022 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013717 B = 0.003669 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.742213 B = 7630.379163 C = 9244.354893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.157 3.843 3 H 0.077 0.923 4 C 0.115 3.885 5 N -0.697 5.697 6 C 0.556 3.444 7 O -0.585 6.585 8 C -0.142 4.142 9 C -0.073 4.073 10 C -0.121 4.121 11 C 0.076 3.924 12 C 0.035 3.965 13 C -0.066 4.066 14 O -0.321 6.321 15 C 0.012 3.988 16 C 0.013 3.987 17 O -0.314 6.314 18 N -0.603 5.603 19 C 0.184 3.816 20 C -0.256 4.256 21 H 0.084 0.916 22 C -0.050 4.050 23 N -0.939 5.939 24 Si 0.960 3.040 25 H -0.256 1.256 26 H -0.298 1.298 27 H -0.302 1.302 28 H 0.042 0.958 29 H 0.077 0.923 30 H 0.042 0.958 31 H 0.077 0.923 32 H 0.048 0.952 33 H 0.411 0.589 34 H 0.148 0.852 35 H 0.161 0.839 36 H 0.137 0.863 37 H 0.158 0.842 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.159 0.841 41 H 0.002 0.998 42 H 0.012 0.988 43 H 0.018 0.982 44 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.422 0.164 14.391 21.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.049 3.951 3 H 0.096 0.904 4 C -0.011 4.011 5 N -0.348 5.348 6 C 0.344 3.656 7 O -0.468 6.468 8 C -0.145 4.145 9 C -0.092 4.092 10 C -0.140 4.140 11 C 0.030 3.970 12 C -0.010 4.010 13 C -0.085 4.085 14 O -0.236 6.236 15 C -0.063 4.063 16 C -0.061 4.061 17 O -0.228 6.228 18 N -0.326 5.326 19 C 0.039 3.961 20 C -0.386 4.386 21 H 0.102 0.898 22 C -0.245 4.245 23 N -0.585 5.585 24 Si 0.790 3.210 25 H -0.179 1.179 26 H -0.225 1.225 27 H -0.229 1.229 28 H 0.062 0.938 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.249 0.751 34 H 0.166 0.834 35 H 0.179 0.821 36 H 0.155 0.845 37 H 0.175 0.825 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.177 0.823 41 H 0.021 0.979 42 H 0.030 0.970 43 H 0.037 0.963 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 16.035 -0.218 14.914 21.900 hybrid contribution 0.472 -0.021 -1.361 1.440 sum 16.506 -0.238 13.554 21.359 Atomic orbital electron populations 1.22072 0.96073 1.01247 1.01425 1.20796 0.93620 0.95612 0.85041 0.90444 1.21854 0.79361 1.00681 0.99177 1.45805 1.08376 1.57778 1.22794 1.18328 0.87436 0.77646 0.82189 1.90707 1.70697 1.50385 1.35026 1.19574 0.92394 1.05305 0.97228 1.21284 0.93823 0.97354 0.96695 1.20603 0.93280 1.00678 0.99390 1.19233 0.83804 0.98317 0.95692 1.18658 0.91624 1.00055 0.90636 1.20396 0.90624 0.98546 0.98962 1.86319 1.28636 1.73908 1.34781 1.24037 0.79816 0.96992 1.05435 1.24055 0.98188 0.98910 0.84967 1.86282 1.14648 1.86566 1.35314 1.44142 1.58409 1.07832 1.22218 1.20370 0.97394 0.84164 0.94162 1.19644 1.18383 1.11235 0.89341 0.89845 1.25742 1.00269 1.00281 0.98247 1.70250 1.36994 1.36111 1.15193 0.85296 0.79246 0.77542 0.78939 1.17930 1.22529 1.22935 0.93838 0.90455 0.93930 0.90519 0.93316 0.75074 0.83437 0.82115 0.84517 0.82490 0.90165 0.89656 0.82338 0.97946 0.96957 0.96350 0.94671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.00 9.20 71.98 0.66 -4.34 16 2 C 0.16 5.72 2.87 44.99 0.13 5.85 16 3 H 0.08 2.72 7.87 -2.39 -0.02 2.70 16 4 C 0.11 3.94 4.93 86.38 0.43 4.36 16 5 N -0.70 -23.94 5.34 -466.21 -2.49 -26.43 16 6 C 0.56 19.85 7.76 86.71 0.67 20.52 16 7 O -0.59 -24.18 16.34 -3.98 -0.07 -24.25 16 8 C -0.14 -4.39 5.87 -20.10 -0.12 -4.51 16 9 C -0.07 -1.96 9.53 22.50 0.21 -1.75 16 10 C -0.12 -2.93 9.94 22.33 0.22 -2.70 16 11 C 0.08 1.85 6.50 22.70 0.15 1.99 16 12 C 0.04 0.93 6.48 22.53 0.15 1.07 16 13 C -0.07 -1.96 9.50 22.63 0.22 -1.74 16 14 O -0.32 -7.23 10.41 -83.01 -0.86 -8.09 16 15 C 0.01 0.14 7.26 72.14 0.52 0.67 16 16 C 0.01 0.15 7.26 72.14 0.52 0.67 16 17 O -0.31 -6.33 10.41 -81.00 -0.84 -7.17 16 18 N -0.60 -27.40 2.28 -702.77 -1.61 -29.00 16 19 C 0.18 8.91 8.00 127.77 1.02 9.94 16 20 C -0.26 -12.60 9.31 84.03 0.78 -11.82 16 21 H 0.08 3.81 7.82 -2.91 -0.02 3.79 16 22 C -0.05 -2.64 5.10 84.86 0.43 -2.20 16 23 N -0.94 -53.80 10.72 21.65 0.23 -53.57 16 24 Si 0.96 42.41 29.57 68.60 2.03 44.44 16 25 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 26 H -0.30 -13.46 7.11 99.48 0.71 -12.75 16 27 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 28 H 0.04 1.51 7.67 -2.39 -0.02 1.49 16 29 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.05 1.82 6.86 -2.39 -0.02 1.80 16 33 H 0.41 13.84 5.91 -92.71 -0.55 13.29 16 34 H 0.15 3.79 6.39 -2.91 -0.02 3.78 16 35 H 0.16 3.19 8.06 -2.91 -0.02 3.17 16 36 H 0.14 4.24 7.64 -2.91 -0.02 4.22 16 37 H 0.16 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.16 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.00 0.12 7.34 -2.39 -0.02 0.10 16 42 H 0.01 0.63 7.35 -2.38 -0.02 0.61 16 43 H 0.02 0.79 6.53 -2.39 -0.02 0.78 16 44 H 0.24 13.79 8.31 -92.71 -0.77 13.02 16 Total: -1.00 -68.38 360.67 2.87 -65.50 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: 0.47 Total: 22.55 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: 6.00 Total: 16.02 kcal Atomic # 7 Polarization: -105.13 SS G_CDS: -3.86 Total: -109.00 kcal Atomic # 8 Polarization: -37.74 SS G_CDS: -1.77 Total: -39.51 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -68.38 2.87 -65.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755326670.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.554 kcal (2) G-P(sol) polarization free energy of solvation -68.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds