Wall clock time and date at job start Tue Mar 31 2020 13:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.51210 * 2 1 4 4 C 1.53720 * 109.48527 * 120.25294 * 2 1 3 5 5 N 1.47154 * 108.16139 * 172.40337 * 4 2 1 6 6 C 1.34776 * 120.98148 * 129.43377 * 5 4 2 7 7 O 1.21587 * 119.99780 * 4.89770 * 6 5 4 8 8 N 1.34772 * 120.00022 * 184.88908 * 6 5 4 9 9 C 1.46501 * 119.99972 * 185.14305 * 8 6 5 10 10 C 1.50706 * 109.47065 * 180.02562 * 9 8 6 11 11 C 1.38322 * 119.96505 * 270.27660 * 10 9 8 12 12 C 1.38281 * 120.13916 * 180.23218 * 11 10 9 13 13 C 1.38123 * 120.06540 * 359.49239 * 12 11 10 14 14 C 1.38854 * 119.92950 * 0.25157 * 13 12 11 15 15 O 1.35758 * 120.06952 * 179.97438 * 14 13 12 16 16 C 1.34836 * 116.99783 * 354.31759 * 15 14 13 17 17 H 1.08003 * 119.99623 * 354.58268 * 16 15 14 18 18 C 1.38653 * 120.00230 * 174.58926 * 16 15 14 19 19 N 1.31561 * 119.99607 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00276 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46968 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47174 * 119.99747 * 20 18 16 23 23 H 1.48497 * 109.47235 * 240.00156 * 20 18 16 24 24 C 1.38074 * 119.96515 * 89.99954 * 10 9 8 25 25 C 1.47154 * 118.03602 * 309.16031 * 5 4 2 26 26 C 1.53300 * 108.38409 * 50.78560 * 25 5 4 27 27 O 1.42956 * 109.51929 * 239.89432 * 2 1 3 28 28 H 1.09006 * 109.46665 * 180.10193 * 1 2 3 29 29 H 1.08989 * 109.47293 * 300.10629 * 1 2 3 30 30 H 1.09004 * 109.46759 * 60.10974 * 1 2 3 31 31 H 1.08993 * 109.83413 * 52.72358 * 4 2 1 32 32 H 1.08999 * 109.74489 * 292.03373 * 4 2 1 33 33 H 0.97002 * 119.99932 * 5.15385 * 8 6 5 34 34 H 1.08995 * 109.47139 * 60.00598 * 9 8 6 35 35 H 1.08997 * 109.47314 * 300.00033 * 9 8 6 36 36 H 1.08000 * 119.93099 * 359.97438 * 11 10 9 37 37 H 1.07991 * 119.96815 * 179.76828 * 12 11 10 38 38 H 1.08000 * 120.03634 * 180.23377 * 13 12 11 39 39 H 0.97003 * 119.99837 * 180.02562 * 19 18 16 40 40 H 1.08005 * 120.03383 * 359.97438 * 24 10 9 41 41 H 1.09000 * 109.68250 * 170.51038 * 25 5 4 42 42 H 1.08998 * 109.68206 * 291.02858 * 25 5 4 43 43 H 1.09002 * 109.50676 * 67.62446 * 26 25 5 44 44 H 1.09002 * 109.51216 * 187.72381 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0275 0.0000 4 6 2.0428 -0.7301 1.2518 5 7 3.5023 -0.8747 1.1328 6 6 4.3205 -0.5021 2.1369 7 8 3.8529 -0.1223 3.1930 8 7 5.6570 -0.5507 1.9704 9 6 6.5467 -0.2544 3.0959 10 6 7.9806 -0.3772 2.6487 11 6 8.6329 -1.5931 2.7459 12 6 9.9501 -1.7088 2.3411 13 6 10.6152 -0.6122 1.8284 14 6 9.9615 0.6084 1.7246 15 8 10.6128 1.6882 1.2216 16 6 11.9254 1.5401 0.9511 17 1 12.4314 0.6236 1.2167 18 6 12.6255 2.5643 0.3320 19 7 12.0090 3.6804 0.0081 20 14 14.4442 2.3593 -0.0422 21 1 14.8968 1.0224 0.4192 22 1 14.6650 2.4794 -1.5057 23 1 15.2165 3.4134 0.6632 24 6 8.6401 0.7226 2.1370 25 6 4.0418 -1.4438 -0.1124 26 6 3.4313 -0.6839 -1.2955 27 8 2.0077 -0.6759 -1.1656 28 1 -0.3633 -1.0277 0.0018 29 1 -0.3633 0.5154 0.8889 30 1 -0.3633 0.5122 -0.8910 31 1 1.5807 -1.7148 1.3208 32 1 1.8028 -0.1482 2.1417 33 1 6.0299 -0.7818 1.1052 34 1 6.3565 -0.9596 3.9049 35 1 6.3620 0.7606 3.4477 36 1 8.1136 -2.4530 3.1427 37 1 10.4578 -2.6585 2.4217 38 1 11.6428 -0.7040 1.5089 39 1 12.4987 4.3968 -0.4253 40 1 8.1287 1.6706 2.0568 41 1 5.1262 -1.3348 -0.1262 42 1 3.7781 -2.4994 -0.1780 43 1 3.8023 0.3411 -1.3003 44 1 3.7099 -1.1762 -2.2272 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771605477.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:36 Heat of formation + Delta-G solvation = -88.352465 kcal Electronic energy + Delta-G solvation = -26361.763366 eV Core-core repulsion = 22472.441911 eV Total energy + Delta-G solvation = -3889.321455 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.68108 -40.81752 -39.69491 -38.47194 -36.00132 -35.77416 -34.29718 -33.89542 -32.15740 -30.78324 -29.77870 -28.09610 -27.32656 -26.10163 -24.46099 -23.27581 -22.62096 -22.30972 -20.97325 -19.88370 -19.25612 -18.65406 -17.81030 -17.26460 -17.00602 -16.75417 -16.40930 -16.28675 -16.09968 -15.90655 -15.70460 -15.42398 -15.18315 -15.07791 -14.64922 -14.30020 -13.97539 -13.74122 -13.67054 -13.36133 -13.14853 -13.09959 -12.93963 -12.71722 -12.58786 -12.32420 -12.27606 -12.21252 -12.08554 -11.83160 -11.36854 -11.24131 -11.14629 -10.82319 -10.29045 -9.78762 -9.51835 -9.04502 -8.47823 -6.16140 0.34493 0.69509 1.35879 1.42857 1.53744 1.54420 1.99258 2.16900 2.69211 2.71566 2.92562 3.19108 3.36975 3.62987 3.79081 3.88381 3.98492 4.02355 4.08867 4.13718 4.30602 4.31775 4.41480 4.47246 4.52415 4.62724 4.66446 4.71254 4.73104 4.81827 4.88267 4.99580 5.00880 5.11074 5.22900 5.24547 5.31616 5.35484 5.61095 5.70005 5.70799 5.77452 6.01033 6.11337 6.15765 6.79918 6.97264 7.39719 7.77518 8.75527 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017916 B = 0.002530 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.445823 B =11062.484192 C =11829.130376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.073 3.927 3 H 0.052 0.948 4 C 0.102 3.898 5 N -0.635 5.635 6 C 0.705 3.295 7 O -0.629 6.629 8 N -0.730 5.730 9 C 0.192 3.808 10 C -0.059 4.059 11 C -0.166 4.166 12 C -0.069 4.069 13 C -0.232 4.232 14 C 0.112 3.888 15 O -0.232 6.232 16 C -0.410 4.410 17 H 0.103 0.897 18 C -0.023 4.023 19 N -0.921 5.921 20 Si 1.018 2.982 21 H -0.249 1.249 22 H -0.269 1.269 23 H -0.271 1.271 24 C -0.180 4.180 25 C 0.074 3.926 26 C 0.046 3.954 27 O -0.387 6.387 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.406 0.594 34 H 0.086 0.914 35 H 0.060 0.940 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.121 0.879 39 H 0.272 0.728 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.048 0.952 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.837 -13.770 -1.453 21.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.014 3.986 3 H 0.070 0.930 4 C -0.021 4.021 5 N -0.372 5.372 6 C 0.407 3.593 7 O -0.511 6.511 8 N -0.387 5.387 9 C 0.069 3.931 10 C -0.060 4.060 11 C -0.185 4.185 12 C -0.086 4.086 13 C -0.252 4.252 14 C 0.062 3.938 15 O -0.139 6.139 16 C -0.486 4.486 17 H 0.121 0.879 18 C -0.221 4.221 19 N -0.559 5.559 20 Si 0.838 3.162 21 H -0.173 1.173 22 H -0.194 1.194 23 H -0.196 1.196 24 C -0.200 4.200 25 C -0.048 4.048 26 C -0.031 4.031 27 O -0.306 6.306 28 H 0.091 0.909 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.244 0.756 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.166 0.834 37 H 0.167 0.833 38 H 0.139 0.861 39 H 0.081 0.919 40 H 0.124 0.876 41 H 0.115 0.885 42 H 0.113 0.887 43 H 0.067 0.933 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -17.324 -13.180 -0.946 21.789 hybrid contribution 1.420 0.637 -0.438 1.616 sum -15.905 -12.543 -1.384 20.303 Atomic orbital electron populations 1.21726 0.90340 1.03876 1.03654 1.22660 0.96973 0.94609 0.84363 0.92990 1.22373 0.78001 1.02271 0.99469 1.47386 1.06823 1.66546 1.16475 1.15939 0.81618 0.78273 0.83463 1.90877 1.76068 1.56123 1.28018 1.45245 1.03556 1.74820 1.15078 1.19899 0.83629 1.01512 0.88087 1.19417 0.94673 0.92982 0.98897 1.20991 0.95039 0.97045 1.05441 1.21166 0.94525 0.97757 0.95201 1.21384 1.01776 0.93321 1.08695 1.19854 0.92781 0.87787 0.93363 1.83963 1.24200 1.33063 1.72676 1.21845 0.81864 1.04393 1.40525 0.87925 1.26580 1.05682 0.94131 0.95698 1.70194 1.39086 1.06150 1.40495 0.84532 0.73811 0.79455 0.78452 1.17265 1.19383 1.19629 1.20202 0.92753 0.99790 1.07263 1.22553 0.99806 0.99360 0.83105 1.23103 0.80683 1.00257 0.99097 1.87949 1.21538 1.77458 1.43646 0.90877 0.89524 0.91130 0.89596 0.89332 0.75591 0.89568 0.92204 0.83390 0.83256 0.86142 0.91888 0.87647 0.88476 0.88660 0.93322 0.85006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.57 71.98 0.69 -0.98 16 2 C 0.07 1.24 3.41 30.84 0.11 1.35 16 3 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 4 C 0.10 1.95 5.94 86.50 0.51 2.47 16 5 N -0.63 -13.76 3.01 -834.51 -2.52 -16.27 16 6 C 0.71 19.78 8.31 179.06 1.49 21.27 16 7 O -0.63 -22.38 15.84 -3.99 -0.06 -22.44 16 8 N -0.73 -18.58 5.45 -482.30 -2.63 -21.20 16 9 C 0.19 5.36 5.80 85.63 0.50 5.86 16 10 C -0.06 -1.84 5.25 -19.88 -0.10 -1.95 16 11 C -0.17 -4.58 9.70 22.30 0.22 -4.36 16 12 C -0.07 -2.08 10.04 22.25 0.22 -1.86 16 13 C -0.23 -9.36 9.13 22.39 0.20 -9.16 16 14 C 0.11 5.32 6.65 22.58 0.15 5.47 16 15 O -0.23 -13.58 9.76 -22.89 -0.22 -13.80 16 16 C -0.41 -23.18 9.44 67.92 0.64 -22.54 16 17 H 0.10 5.28 5.29 -2.91 -0.02 5.27 16 18 C -0.02 -1.31 5.49 84.83 0.47 -0.84 16 19 N -0.92 -55.79 13.67 21.61 0.30 -55.49 16 20 Si 1.02 41.85 29.55 68.60 2.03 43.88 16 21 H -0.25 -9.37 7.11 99.48 0.71 -8.66 16 22 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 23 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 24 C -0.18 -7.30 9.64 22.39 0.22 -7.09 16 25 C 0.07 1.14 6.64 86.36 0.57 1.72 16 26 C 0.05 0.69 6.99 72.08 0.50 1.20 16 27 O -0.39 -7.06 10.38 -148.98 -1.55 -8.60 16 28 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.09 1.95 7.12 -2.39 -0.02 1.93 16 33 H 0.41 8.97 6.00 -92.71 -0.56 8.41 16 34 H 0.09 2.20 8.09 -2.39 -0.02 2.18 16 35 H 0.06 1.85 8.08 -2.39 -0.02 1.84 16 36 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 37 H 0.15 3.42 8.06 -2.91 -0.02 3.39 16 38 H 0.12 4.97 5.71 -2.91 -0.02 4.95 16 39 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 40 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16 41 H 0.10 1.34 5.65 -2.39 -0.01 1.33 16 42 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -75.09 364.56 2.20 -72.89 By element: Atomic # 1 Polarization: 30.04 SS G_CDS: 0.47 Total: 30.50 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: 6.38 Total: -9.45 kcal Atomic # 7 Polarization: -88.12 SS G_CDS: -4.85 Total: -92.97 kcal Atomic # 8 Polarization: -43.02 SS G_CDS: -1.83 Total: -44.85 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -75.09 2.20 -72.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771605477.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.463 kcal (2) G-P(sol) polarization free energy of solvation -75.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds