Wall clock time and date at job start Tue Mar 31 2020 13:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.47078 * 2 1 4 4 C 1.50708 * 109.46933 * 119.99377 * 2 1 3 5 5 H 1.07998 * 119.99576 * 119.99782 * 4 2 1 6 6 C 1.37870 * 120.00077 * 300.00105 * 4 2 1 7 7 N 1.31512 * 120.00369 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00171 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46725 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47461 * 120.00122 * 8 6 4 11 11 H 1.48501 * 109.47337 * 240.00523 * 8 6 4 12 12 N 1.46894 * 109.47552 * 239.99693 * 2 1 3 13 13 C 1.46897 * 111.00425 * 183.95662 * 12 2 1 14 14 C 1.38578 * 111.00191 * 59.99975 * 12 2 1 15 15 N 1.31218 * 126.47068 * 0.02901 * 14 12 2 16 16 N 1.28529 * 109.86317 * 180.02562 * 15 14 12 17 17 C 1.30297 * 110.05083 * 0.02562 * 16 15 14 18 18 C 1.50697 * 126.34717 * 179.97438 * 17 16 15 19 19 H 1.09002 * 109.47120 * 180.02562 * 18 17 16 20 20 C 1.52997 * 109.47466 * 300.02521 * 18 17 16 21 21 C 1.50708 * 109.47025 * 60.02695 * 18 17 16 22 22 C 1.38427 * 122.53929 * 119.73382 * 21 18 17 23 23 C 1.33389 * 114.91743 * 179.75864 * 22 21 18 24 24 S 1.75884 * 109.59274 * 0.48022 * 23 22 21 25 25 C 1.33387 * 122.53587 * 300.02276 * 21 18 17 26 26 N 1.36457 * 126.47637 * 180.31678 * 14 12 2 27 27 C 1.46496 * 127.13543 * 0.02562 * 26 14 12 28 28 H 1.08990 * 109.47000 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47048 * 300.00703 * 1 2 3 30 30 H 1.09003 * 109.46791 * 60.00328 * 1 2 3 31 31 H 0.96999 * 120.00605 * 180.02562 * 7 6 4 32 32 H 1.09002 * 109.47199 * 296.04565 * 13 12 2 33 33 H 1.09005 * 109.47256 * 56.04155 * 13 12 2 34 34 H 1.08998 * 109.47150 * 176.04340 * 13 12 2 35 35 H 1.09002 * 109.47153 * 59.99773 * 20 18 17 36 36 H 1.09001 * 109.46832 * 299.99964 * 20 18 17 37 37 H 1.09004 * 109.47261 * 179.97438 * 20 18 17 38 38 H 1.07994 * 122.53742 * 359.97438 * 22 21 18 39 39 H 1.07993 * 125.20548 * 180.20503 * 23 22 21 40 40 H 1.07998 * 125.20272 * 359.97438 * 25 21 18 41 41 H 1.09000 * 109.47139 * 270.16182 * 27 26 14 42 42 H 1.09001 * 109.47339 * 30.16163 * 27 26 14 43 43 H 1.08998 * 109.47388 * 150.16027 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3212 -1.1200 4.0081 9 1 3.1453 -2.2874 3.6040 10 1 3.1464 -0.1870 4.8167 11 1 1.1659 -1.5864 4.8162 12 7 2.0198 -0.6925 -1.1993 13 6 3.4851 -0.7946 -1.1869 14 6 1.5755 -0.0642 -2.3518 15 7 0.8192 1.0062 -2.4146 16 7 0.6001 1.3147 -3.6429 17 6 1.1983 0.4661 -4.4302 18 6 1.1843 0.4828 -5.9370 19 1 1.7734 -0.3528 -6.3151 20 6 -0.2568 0.3575 -6.4351 21 6 1.7756 1.7783 -6.4305 22 6 2.9016 1.8243 -7.2344 23 6 3.2909 3.0505 -7.5866 24 16 2.2096 4.2403 -6.8733 25 6 1.2568 2.9675 -6.1212 26 7 1.8374 -0.4450 -3.6358 27 6 2.6380 -1.5915 -4.0724 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 0.7087 1.1615 3.4843 32 1 3.9193 0.2043 -1.2299 33 1 3.8070 -1.2915 -0.2716 34 1 3.8164 -1.3723 -2.0498 35 1 -0.8459 1.1931 -6.0570 36 1 -0.6844 -0.5794 -6.0782 37 1 -0.2670 0.3700 -7.5251 38 1 3.4231 0.9346 -7.5551 39 1 4.1426 3.2782 -8.2104 40 1 0.3848 3.1248 -5.5037 41 1 3.6791 -1.2874 -4.1809 42 1 2.5674 -2.3875 -3.3311 43 1 2.2633 -1.9528 -5.0301 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772146124.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:37 Heat of formation + Delta-G solvation = 135.326587 kcal Electronic energy + Delta-G solvation = -25146.461228 eV Core-core repulsion = 21741.884847 eV Total energy + Delta-G solvation = -3404.576381 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.49164 -38.67280 -37.08458 -34.75488 -33.69865 -32.64823 -29.23566 -28.99245 -28.64997 -27.43894 -25.51699 -25.13660 -24.27192 -22.84692 -21.72088 -20.27120 -19.58151 -18.50314 -17.67805 -16.75712 -16.34041 -15.90047 -15.51882 -15.10226 -14.73255 -14.36864 -13.96202 -13.83783 -13.46649 -13.32135 -12.99062 -12.88415 -12.78379 -12.44432 -12.35061 -12.16113 -11.83374 -11.70447 -11.42662 -11.17188 -11.01845 -10.87410 -10.77425 -10.49500 -10.35766 -10.18019 -10.04620 -9.81094 -9.53836 -9.31648 -8.82651 -8.60785 -8.47835 -8.43043 -7.31589 -6.04097 -4.12210 0.98226 1.61525 1.93495 2.26769 2.56449 2.78693 3.27258 3.35047 3.37687 3.45921 4.32325 4.50232 4.55433 4.64485 4.77858 4.97304 5.02114 5.12509 5.22229 5.26940 5.27540 5.39842 5.57673 5.63963 5.67543 5.70843 5.81993 5.96435 6.00494 6.07048 6.23827 6.31566 6.37354 6.46464 6.49323 6.93402 7.02920 7.22122 7.40632 7.47448 7.73034 7.74485 7.99472 8.29880 8.46180 8.89600 9.42023 9.52583 11.01949 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.021867 B = 0.003174 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.136473 B = 8818.297352 C = 9074.367523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.231 3.769 3 H 0.020 0.980 4 C -0.518 4.518 5 H 0.065 0.935 6 C 0.064 3.936 7 N -0.882 5.882 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.454 5.454 13 C 0.033 3.967 14 C 0.386 3.614 15 N -0.315 5.315 16 N -0.279 5.279 17 C 0.151 3.849 18 C 0.071 3.929 19 H 0.087 0.913 20 C -0.136 4.136 21 C -0.107 4.107 22 C -0.125 4.125 23 C -0.222 4.222 24 S 0.089 5.911 25 C -0.169 4.169 26 N -0.492 5.492 27 C 0.079 3.921 28 H 0.022 0.978 29 H 0.086 0.914 30 H 0.046 0.954 31 H 0.262 0.738 32 H 0.028 0.972 33 H 0.098 0.902 34 H 0.049 0.951 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.137 0.863 39 H 0.161 0.839 40 H 0.175 0.825 41 H 0.072 0.928 42 H 0.094 0.906 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.566 -1.066 -21.685 22.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.127 3.873 3 H 0.038 0.962 4 C -0.557 4.557 5 H 0.083 0.917 6 C -0.139 4.139 7 N -0.520 5.520 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.178 5.178 13 C -0.114 4.114 14 C 0.031 3.969 15 N -0.159 5.159 16 N -0.118 5.118 17 C -0.117 4.117 18 C 0.047 3.953 19 H 0.106 0.894 20 C -0.194 4.194 21 C -0.120 4.120 22 C -0.155 4.155 23 C -0.357 4.357 24 S 0.352 5.648 25 C -0.305 4.305 26 N -0.189 5.189 27 C -0.065 4.065 28 H 0.041 0.959 29 H 0.105 0.895 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.047 0.953 33 H 0.116 0.884 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.155 0.845 39 H 0.179 0.821 40 H 0.192 0.808 41 H 0.091 0.909 42 H 0.112 0.888 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.413 1.344 -21.046 21.364 hybrid contribution 1.580 -2.556 0.629 3.071 sum 4.994 -1.212 -20.417 21.054 Atomic orbital electron populations 1.21967 0.96511 0.99215 1.02419 1.19362 0.93596 0.92321 0.82026 0.96203 1.21105 1.32195 1.12774 0.89605 0.91722 1.24898 0.94993 0.95014 0.98954 1.69937 1.35930 1.22566 1.23541 0.86429 0.78601 0.79495 0.82780 1.19759 1.21016 1.20914 1.59070 1.10490 1.48508 0.99714 1.22428 0.85449 1.00465 1.03067 1.23277 0.98293 0.91335 0.84037 1.74835 1.19951 1.10640 1.10520 1.73823 1.19571 1.21731 0.96700 1.24141 1.00614 0.91783 0.95145 1.17978 0.98179 0.94703 0.84391 0.89437 1.21810 0.93740 1.03090 1.00808 1.18602 0.97283 0.94685 1.01416 1.20017 0.97291 0.97942 1.00297 1.25491 1.05646 0.96022 1.08543 1.84306 1.22889 1.10958 1.46605 1.25678 1.05240 0.94526 1.05057 1.46021 1.42097 1.24685 1.06113 1.22001 0.94984 0.87537 1.01931 0.95885 0.89550 0.93556 0.92788 0.95331 0.88360 0.93200 0.91116 0.92180 0.91657 0.84513 0.82107 0.80796 0.90897 0.88762 0.89865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 8.77 37.16 0.33 -3.46 16 2 C 0.23 6.02 1.73 -68.86 -0.12 5.90 16 3 H 0.02 0.59 8.11 -51.93 -0.42 0.17 16 4 C -0.52 -13.96 7.88 -34.44 -0.27 -14.23 16 5 H 0.06 1.68 6.41 -52.49 -0.34 1.34 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -25.36 11.32 55.43 0.63 -24.74 16 8 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 9 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 12 N -0.45 -9.98 4.69 -176.08 -0.83 -10.81 16 13 C 0.03 0.62 9.09 60.06 0.55 1.16 16 14 C 0.39 8.12 6.75 -318.87 -2.15 5.97 16 15 N -0.31 -7.28 9.00 30.31 0.27 -7.01 16 16 N -0.28 -5.59 11.21 32.99 0.37 -5.22 16 17 C 0.15 2.44 6.47 -154.02 -1.00 1.45 16 18 C 0.07 0.82 3.00 -92.92 -0.28 0.54 16 19 H 0.09 0.79 6.84 -51.93 -0.35 0.44 16 20 C -0.14 -1.41 9.01 37.16 0.33 -1.08 16 21 C -0.11 -1.27 4.66 -106.24 -0.49 -1.76 16 22 C -0.12 -1.25 9.92 -41.21 -0.41 -1.66 16 23 C -0.22 -2.14 11.23 29.04 0.33 -1.81 16 24 S 0.09 0.96 23.34 -107.50 -2.51 -1.55 16 25 C -0.17 -2.15 9.76 29.04 0.28 -1.86 16 26 N -0.49 -8.09 3.21 -121.46 -0.39 -8.48 16 27 C 0.08 0.87 9.20 59.84 0.55 1.42 16 28 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 30 H 0.05 1.21 5.43 -51.93 -0.28 0.93 16 31 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.10 1.87 6.10 -51.93 -0.32 1.55 16 34 H 0.05 0.73 5.44 -51.93 -0.28 0.44 16 35 H 0.07 0.82 7.75 -51.93 -0.40 0.42 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 40 H 0.17 2.39 7.50 -52.49 -0.39 2.00 16 41 H 0.07 0.69 7.84 -51.93 -0.41 0.28 16 42 H 0.09 1.06 7.60 -51.93 -0.39 0.67 16 43 H 0.08 0.66 7.23 -51.93 -0.38 0.29 16 LS Contribution 355.71 15.07 5.36 5.36 Total: -1.00 -32.49 355.71 -10.52 -43.01 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -5.95 Total: 1.28 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -2.45 Total: -7.76 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: 0.06 Total: -56.26 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.51 Total: -1.55 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.49 -10.52 -43.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772146124.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.332 kcal (2) G-P(sol) polarization free energy of solvation -32.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds