Wall clock time and date at job start Tue Mar 31 2020 13:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.47078 * 2 1 4 4 C 1.50708 * 109.46933 * 119.99377 * 2 1 3 5 5 H 1.07998 * 119.99576 * 119.99782 * 4 2 1 6 6 C 1.37870 * 120.00077 * 300.00105 * 4 2 1 7 7 N 1.31512 * 120.00369 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00171 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46725 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47461 * 120.00122 * 8 6 4 11 11 H 1.48501 * 109.47337 * 240.00523 * 8 6 4 12 12 N 1.46894 * 109.47552 * 239.99693 * 2 1 3 13 13 C 1.46897 * 111.00425 * 183.95662 * 12 2 1 14 14 C 1.38578 * 111.00191 * 59.99975 * 12 2 1 15 15 N 1.31218 * 126.47068 * 0.02901 * 14 12 2 16 16 N 1.28529 * 109.86317 * 180.02562 * 15 14 12 17 17 C 1.30297 * 110.05083 * 0.02562 * 16 15 14 18 18 C 1.50697 * 126.34717 * 179.97438 * 17 16 15 19 19 H 1.09002 * 109.47120 * 180.02562 * 18 17 16 20 20 C 1.52997 * 109.47466 * 300.02521 * 18 17 16 21 21 C 1.50708 * 109.47025 * 60.02695 * 18 17 16 22 22 C 1.38427 * 122.53929 * 119.73382 * 21 18 17 23 23 C 1.33389 * 114.91743 * 179.75864 * 22 21 18 24 24 S 1.75884 * 109.59274 * 0.48022 * 23 22 21 25 25 C 1.33387 * 122.53587 * 300.02276 * 21 18 17 26 26 N 1.36457 * 126.47637 * 180.31678 * 14 12 2 27 27 C 1.46496 * 127.13543 * 0.02562 * 26 14 12 28 28 H 1.08990 * 109.47000 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47048 * 300.00703 * 1 2 3 30 30 H 1.09003 * 109.46791 * 60.00328 * 1 2 3 31 31 H 0.96999 * 120.00605 * 180.02562 * 7 6 4 32 32 H 1.09002 * 109.47199 * 296.04565 * 13 12 2 33 33 H 1.09005 * 109.47256 * 56.04155 * 13 12 2 34 34 H 1.08998 * 109.47150 * 176.04340 * 13 12 2 35 35 H 1.09002 * 109.47153 * 59.99773 * 20 18 17 36 36 H 1.09001 * 109.46832 * 299.99964 * 20 18 17 37 37 H 1.09004 * 109.47261 * 179.97438 * 20 18 17 38 38 H 1.07994 * 122.53742 * 359.97438 * 22 21 18 39 39 H 1.07993 * 125.20548 * 180.20503 * 23 22 21 40 40 H 1.07998 * 125.20272 * 359.97438 * 25 21 18 41 41 H 1.09000 * 109.47139 * 270.16182 * 27 26 14 42 42 H 1.09001 * 109.47339 * 30.16163 * 27 26 14 43 43 H 1.08998 * 109.47388 * 150.16027 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3212 -1.1200 4.0081 9 1 3.1453 -2.2874 3.6040 10 1 3.1464 -0.1870 4.8167 11 1 1.1659 -1.5864 4.8162 12 7 2.0198 -0.6925 -1.1993 13 6 3.4851 -0.7946 -1.1869 14 6 1.5755 -0.0642 -2.3518 15 7 0.8192 1.0062 -2.4146 16 7 0.6001 1.3147 -3.6429 17 6 1.1983 0.4661 -4.4302 18 6 1.1843 0.4828 -5.9370 19 1 1.7734 -0.3528 -6.3151 20 6 -0.2568 0.3575 -6.4351 21 6 1.7756 1.7783 -6.4305 22 6 2.9016 1.8243 -7.2344 23 6 3.2909 3.0505 -7.5866 24 16 2.2096 4.2403 -6.8733 25 6 1.2568 2.9675 -6.1212 26 7 1.8374 -0.4450 -3.6358 27 6 2.6380 -1.5915 -4.0724 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 0.7087 1.1615 3.4843 32 1 3.9193 0.2043 -1.2299 33 1 3.8070 -1.2915 -0.2716 34 1 3.8164 -1.3723 -2.0498 35 1 -0.8459 1.1931 -6.0570 36 1 -0.6844 -0.5794 -6.0782 37 1 -0.2670 0.3700 -7.5251 38 1 3.4231 0.9346 -7.5551 39 1 4.1426 3.2782 -8.2104 40 1 0.3848 3.1248 -5.5037 41 1 3.6791 -1.2874 -4.1809 42 1 2.5674 -2.3875 -3.3311 43 1 2.2633 -1.9528 -5.0301 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772146124.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:37 Heat of formation + Delta-G solvation = 117.399271 kcal Electronic energy + Delta-G solvation = -25147.238615 eV Core-core repulsion = 21741.884847 eV Total energy + Delta-G solvation = -3405.353768 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.137 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.91766 -39.61483 -38.75255 -36.06172 -35.04608 -34.26247 -31.20744 -30.31229 -29.64185 -28.53188 -27.33247 -26.19017 -25.94367 -23.96250 -23.42024 -21.44502 -21.16826 -19.43603 -18.61711 -18.48669 -17.75584 -17.41697 -16.99102 -16.45817 -16.26898 -15.59134 -15.55077 -14.90367 -14.73889 -14.49363 -14.25777 -14.05564 -13.76653 -13.66611 -13.60503 -13.26654 -13.05439 -12.95352 -12.81214 -12.74690 -12.52911 -12.37797 -12.22598 -12.11547 -12.03985 -11.99202 -11.61550 -11.39225 -11.01640 -10.91921 -10.56232 -10.44563 -9.65950 -9.33666 -8.98314 -8.13329 -6.29488 0.13814 0.75094 0.92446 1.14311 1.37360 1.44338 1.45719 1.57481 1.78702 2.01627 2.41208 3.01463 3.18224 3.46162 3.65946 3.86822 4.10400 4.12856 4.19076 4.29640 4.38762 4.43317 4.46669 4.55942 4.60982 4.71419 4.80373 4.83290 4.86167 4.93202 4.97594 5.03016 5.17137 5.18496 5.27570 5.35511 5.41802 5.51913 5.59270 5.62058 5.65394 5.96336 6.04501 6.16793 6.60314 6.80921 7.39638 7.95166 8.93570 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.021867 B = 0.003174 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.136473 B = 8818.297352 C = 9074.367523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.244 3.756 3 H -0.028 1.028 4 C -0.528 4.528 5 H 0.075 0.925 6 C 0.011 3.989 7 N -0.919 5.919 8 Si 0.971 3.029 9 H -0.257 1.257 10 H -0.282 1.282 11 H -0.283 1.283 12 N -0.455 5.455 13 C 0.035 3.965 14 C 0.363 3.637 15 N -0.367 5.367 16 N -0.320 5.320 17 C 0.178 3.822 18 C 0.072 3.928 19 H 0.129 0.871 20 C -0.133 4.133 21 C -0.106 4.106 22 C -0.130 4.130 23 C -0.211 4.211 24 S 0.076 5.924 25 C -0.200 4.200 26 N -0.483 5.483 27 C 0.063 3.937 28 H 0.020 0.980 29 H 0.059 0.941 30 H 0.044 0.956 31 H 0.263 0.737 32 H 0.012 0.988 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.046 0.954 36 H 0.061 0.939 37 H 0.094 0.906 38 H 0.171 0.829 39 H 0.190 0.810 40 H 0.151 0.849 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.943 -3.716 -24.303 25.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.138 3.862 3 H -0.011 1.011 4 C -0.566 4.566 5 H 0.094 0.906 6 C -0.189 4.189 7 N -0.558 5.558 8 Si 0.796 3.204 9 H -0.181 1.181 10 H -0.208 1.208 11 H -0.209 1.209 12 N -0.178 5.178 13 C -0.112 4.112 14 C 0.005 3.995 15 N -0.212 5.212 16 N -0.158 5.158 17 C -0.092 4.092 18 C 0.049 3.951 19 H 0.147 0.853 20 C -0.191 4.191 21 C -0.120 4.120 22 C -0.159 4.159 23 C -0.347 4.347 24 S 0.340 5.660 25 C -0.336 4.336 26 N -0.179 5.179 27 C -0.078 4.078 28 H 0.039 0.961 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.031 0.969 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.112 0.888 38 H 0.189 0.811 39 H 0.208 0.792 40 H 0.168 0.832 41 H 0.115 0.885 42 H 0.112 0.888 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.810 -1.326 -23.709 24.446 hybrid contribution 0.852 -1.672 1.251 2.256 sum 6.662 -2.998 -22.457 23.616 Atomic orbital electron populations 1.21759 0.97415 0.98364 1.00989 1.18925 0.92832 0.90213 0.84214 1.01068 1.21417 1.32173 1.12957 0.90084 0.90649 1.25834 0.95057 0.95645 1.02328 1.70102 1.37231 1.24223 1.24250 0.85307 0.78037 0.78621 0.78444 1.18079 1.20756 1.20855 1.58979 1.12230 1.47824 0.98808 1.22515 0.83540 1.00211 1.04893 1.23124 0.99159 0.91810 0.85364 1.74671 1.21376 1.12477 1.12659 1.73752 1.22001 1.23835 0.96208 1.25104 0.97498 0.89696 0.96861 1.18337 0.99668 0.96244 0.80884 0.85276 1.21794 0.92612 1.02185 1.02529 1.18792 0.97741 0.94070 1.01375 1.20286 0.96581 0.99311 0.99755 1.25888 1.05608 0.95249 1.07906 1.84341 1.23422 1.11453 1.46819 1.25629 1.05665 0.96022 1.06311 1.46262 1.41868 1.25650 1.04151 1.22518 0.95806 0.85658 1.03801 0.96128 0.92220 0.93740 0.92817 0.96916 0.88947 0.88596 0.93445 0.91973 0.88762 0.81131 0.79237 0.83153 0.88464 0.88808 0.85769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.10 8.77 71.98 0.63 -6.47 16 2 C 0.24 13.28 1.73 44.17 0.08 13.36 16 3 H -0.03 -1.78 8.11 -2.38 -0.02 -1.80 16 4 C -0.53 -28.96 7.88 25.60 0.20 -28.76 16 5 H 0.08 3.89 6.41 -2.91 -0.02 3.87 16 6 C 0.01 0.60 5.30 84.65 0.45 1.05 16 7 N -0.92 -54.93 11.32 21.44 0.24 -54.69 16 8 Si 0.97 43.23 29.54 68.60 2.03 45.25 16 9 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 12 N -0.45 -20.22 4.69 -710.99 -3.33 -23.55 16 13 C 0.04 1.28 9.09 127.69 1.16 2.44 16 14 C 0.36 15.44 6.75 260.11 1.76 17.20 16 15 N -0.37 -17.82 9.00 -58.00 -0.52 -18.35 16 16 N -0.32 -13.26 11.21 -49.54 -0.56 -13.82 16 17 C 0.18 5.54 6.47 137.64 0.89 6.43 16 18 C 0.07 1.45 3.00 -12.29 -0.04 1.41 16 19 H 0.13 1.56 6.84 -2.39 -0.02 1.54 16 20 C -0.13 -2.47 9.01 71.98 0.65 -1.82 16 21 C -0.11 -2.27 4.66 -20.91 -0.10 -2.37 16 22 C -0.13 -2.08 9.92 21.22 0.21 -1.87 16 23 C -0.21 -3.39 11.23 66.72 0.75 -2.64 16 24 S 0.08 1.60 23.34 -56.49 -1.32 0.28 16 25 C -0.20 -5.11 9.76 66.72 0.65 -4.46 16 26 N -0.48 -14.97 3.21 -538.19 -1.73 -16.69 16 27 C 0.06 1.11 9.20 127.77 1.18 2.29 16 28 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.06 3.62 6.07 -2.39 -0.01 3.61 16 30 H 0.04 2.48 5.43 -2.39 -0.01 2.46 16 31 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 32 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.09 3.44 6.10 -2.38 -0.01 3.43 16 34 H 0.10 2.53 5.44 -2.39 -0.01 2.52 16 35 H 0.05 1.11 7.75 -2.39 -0.02 1.09 16 36 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.09 1.22 8.14 -2.38 -0.02 1.21 16 38 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 39 H 0.19 1.89 8.06 -2.91 -0.02 1.87 16 40 H 0.15 4.50 7.50 -2.91 -0.02 4.47 16 41 H 0.10 1.31 7.84 -2.39 -0.02 1.29 16 42 H 0.09 1.74 7.60 -2.39 -0.02 1.72 16 43 H 0.12 1.21 7.23 -2.39 -0.02 1.19 16 Total: -1.00 -76.79 355.71 4.30 -72.49 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 1.02 Total: 13.29 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: 8.47 Total: -4.22 kcal Atomic # 7 Polarization: -121.21 SS G_CDS: -5.89 Total: -127.10 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -1.32 Total: 0.28 kcal Total: -76.79 4.30 -72.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772146124.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.887 kcal (2) G-P(sol) polarization free energy of solvation -76.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds