Wall clock time and date at job start Tue Mar 31 2020 12:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47147 * 2 1 4 4 C 1.46504 * 119.99730 * 269.99992 * 3 2 1 5 5 C 1.50704 * 109.47055 * 269.99738 * 4 3 2 6 6 H 1.07993 * 119.99940 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99782 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00057 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 119.99830 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47361 * 89.99914 * 9 7 5 11 11 H 1.48498 * 109.47186 * 209.99746 * 9 7 5 12 12 H 1.48501 * 109.47095 * 329.99830 * 9 7 5 13 13 C 1.34774 * 120.00188 * 90.00308 * 3 2 1 14 14 O 1.21286 * 120.00083 * 180.02562 * 13 3 2 15 15 C 1.50700 * 119.99767 * 359.97438 * 13 3 2 16 16 O 1.42898 * 109.46948 * 180.02562 * 15 13 3 17 17 C 1.35976 * 116.99955 * 180.02562 * 16 15 13 18 18 C 1.38544 * 120.08430 * 359.94973 * 17 16 15 19 19 C 1.38246 * 120.01772 * 180.02562 * 18 17 16 20 20 C 1.38274 * 120.17775 * 0.02562 * 19 18 17 21 21 C 1.38200 * 120.16279 * 0.02562 * 20 19 18 22 22 C 1.38719 * 119.98453 * 359.97438 * 21 20 19 23 23 N 1.40124 * 120.08650 * 180.02562 * 22 21 20 24 24 C 1.34774 * 120.00520 * 24.79773 * 23 22 21 25 25 C 1.50703 * 120.00475 * 185.53500 * 24 23 22 26 26 O 1.21294 * 119.99577 * 5.53663 * 24 23 22 27 27 H 1.08999 * 109.47157 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46956 * 300.00048 * 1 2 3 29 29 H 1.08997 * 109.46879 * 60.00310 * 1 2 3 30 30 H 1.09002 * 109.47398 * 239.99800 * 2 1 3 31 31 H 1.09002 * 109.47322 * 119.99844 * 2 1 3 32 32 H 1.08995 * 109.47456 * 30.00026 * 4 3 2 33 33 H 1.08998 * 109.46887 * 149.99919 * 4 3 2 34 34 H 0.96992 * 120.00124 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.46998 * 60.00793 * 15 13 3 36 36 H 1.09001 * 109.47307 * 300.00444 * 15 13 3 37 37 H 1.08006 * 119.99153 * 0.02562 * 18 17 16 38 38 H 1.07994 * 119.91014 * 180.28139 * 19 18 17 39 39 H 1.07998 * 119.91667 * 180.02562 * 20 19 18 40 40 H 1.08004 * 120.00480 * 179.97438 * 21 20 19 41 41 H 0.97003 * 119.99708 * 204.80228 * 23 22 21 42 42 H 1.09002 * 109.46867 * 0.02562 * 25 24 23 43 43 H 1.08997 * 109.46930 * 120.00095 * 25 24 23 44 44 H 1.08994 * 109.47107 * 240.00267 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1494 2.3905 -2.8776 8 7 3.3494 3.1265 -3.6177 9 14 5.9134 2.0964 -3.4171 10 1 5.9761 0.8758 -4.2607 11 1 6.3929 3.2639 -4.1995 12 1 6.7735 1.9156 -2.2202 13 6 2.2430 2.0166 1.1672 14 8 2.6469 3.1602 1.1671 15 6 1.9914 1.3063 2.4723 16 8 2.3005 2.1820 3.5584 17 6 2.1273 1.6920 4.8149 18 6 1.6690 0.3975 4.9985 19 6 1.4929 -0.0991 6.2766 20 6 1.7726 0.6932 7.3748 21 6 2.2291 1.9859 7.2002 22 6 2.4082 2.4910 5.9208 23 7 2.8715 3.8012 5.7413 24 6 3.6007 4.3963 6.7060 25 6 3.9931 5.8449 6.5687 26 8 3.9413 3.7659 7.6847 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.5817 1.6877 -2.0284 33 1 2.0955 3.1410 -1.1385 34 1 3.6754 3.5169 -4.4436 35 1 2.6213 0.4187 2.5302 36 1 0.9433 1.0125 2.5298 37 1 1.4492 -0.2239 4.1428 38 1 1.1399 -1.1099 6.4177 39 1 1.6339 0.3008 8.3714 40 1 2.4464 2.6026 8.0598 41 1 2.6674 4.2800 4.9228 42 1 3.5997 6.2406 5.6324 43 1 3.5831 6.4130 7.4037 44 1 5.0798 5.9287 6.5709 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053327936.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:46 Heat of formation + Delta-G solvation = -99.466964 kcal Electronic energy + Delta-G solvation = -26745.118350 eV Core-core repulsion = 22855.314934 eV Total energy + Delta-G solvation = -3889.803415 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.90137 -40.98359 -40.02558 -38.17666 -36.98043 -35.82561 -34.93641 -31.96745 -31.72932 -31.23944 -30.33536 -29.25789 -28.15907 -25.04642 -24.36636 -23.79973 -23.12654 -21.48194 -20.15602 -19.65304 -18.63905 -18.36239 -17.99916 -17.78039 -17.38158 -17.17919 -16.64373 -16.28201 -15.86152 -15.78628 -15.48648 -15.32018 -14.78336 -14.62737 -14.53842 -14.37898 -13.83133 -13.71903 -13.57270 -13.43835 -13.27244 -13.09343 -13.06122 -12.69563 -12.60523 -12.56539 -12.37407 -12.25864 -12.11398 -11.82857 -11.72770 -11.58137 -10.85352 -10.66581 -10.64968 -9.59887 -9.51583 -8.82552 -8.23976 -6.38406 0.24193 0.40455 1.35925 1.38898 1.48240 1.53935 1.58788 1.68006 2.11313 2.36297 2.65462 2.83159 3.06192 3.46996 3.72853 3.82468 3.95854 4.04730 4.08970 4.19143 4.27746 4.37374 4.41596 4.50110 4.55585 4.60290 4.62950 4.74561 4.92747 4.98198 5.01377 5.05228 5.13764 5.20507 5.31111 5.40307 5.47734 5.54680 5.58320 5.76849 5.83780 6.04065 6.27876 6.39169 6.65640 6.72437 7.02720 7.24109 7.38797 8.83244 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013489 B = 0.003231 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.219435 B = 8664.155076 C =10030.158516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.093 3.907 3 N -0.596 5.596 4 C 0.264 3.736 5 C -0.545 4.545 6 H 0.054 0.946 7 C 0.010 3.990 8 N -0.927 5.927 9 Si 0.966 3.034 10 H -0.262 1.262 11 H -0.281 1.281 12 H -0.275 1.275 13 C 0.497 3.503 14 O -0.582 6.582 15 C 0.057 3.943 16 O -0.318 6.318 17 C 0.082 3.918 18 C -0.189 4.189 19 C -0.092 4.092 20 C -0.138 4.138 21 C -0.113 4.113 22 C 0.094 3.906 23 N -0.662 5.662 24 C 0.505 3.495 25 C -0.164 4.164 26 O -0.572 6.572 27 H 0.099 0.901 28 H 0.061 0.939 29 H 0.039 0.961 30 H 0.077 0.923 31 H 0.104 0.896 32 H 0.028 0.972 33 H -0.003 1.003 34 H 0.267 0.733 35 H 0.115 0.885 36 H 0.124 0.876 37 H 0.159 0.841 38 H 0.162 0.838 39 H 0.150 0.850 40 H 0.139 0.861 41 H 0.421 0.579 42 H 0.095 0.905 43 H 0.116 0.884 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.985 -7.248 19.411 21.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.028 4.028 3 N -0.328 5.328 4 C 0.143 3.857 5 C -0.584 4.584 6 H 0.072 0.928 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.790 3.210 10 H -0.187 1.187 11 H -0.207 1.207 12 H -0.200 1.200 13 C 0.284 3.716 14 O -0.462 6.462 15 C -0.020 4.020 16 O -0.232 6.232 17 C 0.035 3.965 18 C -0.208 4.208 19 C -0.110 4.110 20 C -0.157 4.157 21 C -0.133 4.133 22 C -0.001 4.001 23 N -0.307 5.307 24 C 0.296 3.704 25 C -0.223 4.223 26 O -0.452 6.452 27 H 0.118 0.882 28 H 0.080 0.920 29 H 0.058 0.942 30 H 0.096 0.904 31 H 0.122 0.878 32 H 0.046 0.954 33 H 0.016 0.984 34 H 0.076 0.924 35 H 0.133 0.867 36 H 0.141 0.859 37 H 0.176 0.824 38 H 0.179 0.821 39 H 0.168 0.832 40 H 0.156 0.844 41 H 0.258 0.742 42 H 0.114 0.886 43 H 0.134 0.866 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.475 -6.727 19.839 21.926 hybrid contribution 0.796 0.499 -1.312 1.613 sum -5.679 -6.228 18.527 20.354 Atomic orbital electron populations 1.22185 0.94256 1.03836 1.01873 1.21887 0.95562 0.80888 1.04510 1.48192 1.63673 1.15320 1.05602 1.18740 0.95383 0.91605 0.79992 1.21715 0.97930 1.32111 1.06597 0.92819 1.25823 1.02254 0.94439 0.96454 1.70040 1.37735 1.34097 1.14781 0.85443 0.79111 0.78249 0.78179 1.18700 1.20688 1.19966 1.20703 0.78147 0.86668 0.86042 1.90667 1.47236 1.20480 1.87842 1.22629 1.04384 0.92614 0.82392 1.86044 1.83394 1.41684 1.12042 1.18998 1.01096 0.93604 0.82809 1.21466 1.05178 0.93601 1.00567 1.21336 0.97847 1.01094 0.90742 1.21324 1.00502 0.93142 1.00709 1.21311 0.99357 0.97789 0.94837 1.17491 1.04165 0.86065 0.92399 1.43730 1.51966 1.13192 1.21807 1.21758 0.75806 0.91448 0.81414 1.21909 1.05120 0.88901 1.06354 1.90638 1.55173 1.67008 1.32371 0.88227 0.91990 0.94194 0.90433 0.87786 0.95408 0.98443 0.92369 0.86713 0.85857 0.82359 0.82085 0.83214 0.84380 0.74153 0.88606 0.86571 0.87584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.47 10.24 71.98 0.74 -2.73 16 2 C 0.09 2.51 5.93 86.38 0.51 3.03 16 3 N -0.60 -23.91 2.46 -826.14 -2.03 -25.94 16 4 C 0.26 13.87 5.16 85.63 0.44 14.31 16 5 C -0.54 -30.93 9.39 25.60 0.24 -30.69 16 6 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 7 C 0.01 0.54 5.46 84.66 0.46 1.00 16 8 N -0.93 -55.41 13.29 21.45 0.28 -55.12 16 9 Si 0.97 44.51 29.54 68.60 2.03 46.54 16 10 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 12 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 13 C 0.50 20.16 7.75 87.66 0.68 20.84 16 14 O -0.58 -30.36 16.08 15.99 0.26 -30.11 16 15 C 0.06 1.56 3.77 71.24 0.27 1.83 16 16 O -0.32 -9.94 9.09 -74.24 -0.67 -10.61 16 17 C 0.08 2.17 6.70 22.60 0.15 2.32 16 18 C -0.19 -3.67 9.04 22.34 0.20 -3.46 16 19 C -0.09 -1.50 10.04 22.28 0.22 -1.27 16 20 C -0.14 -2.63 10.04 22.27 0.22 -2.41 16 21 C -0.11 -2.84 8.72 22.38 0.20 -2.65 16 22 C 0.09 2.59 6.45 38.18 0.25 2.84 16 23 N -0.66 -17.27 5.29 -303.14 -1.60 -18.88 16 24 C 0.50 12.54 7.75 87.66 0.68 13.22 16 25 C -0.16 -2.51 10.39 71.24 0.74 -1.77 16 26 O -0.57 -17.84 14.27 -3.07 -0.04 -17.89 16 27 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.06 1.18 7.22 -2.39 -0.02 1.16 16 29 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.08 2.25 8.07 -2.39 -0.02 2.23 16 31 H 0.10 1.96 6.44 -2.39 -0.02 1.94 16 32 H 0.03 1.48 8.07 -2.39 -0.02 1.46 16 33 H 0.00 -0.16 7.42 -2.39 -0.02 -0.17 16 34 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 35 H 0.12 2.46 6.92 -2.39 -0.02 2.44 16 36 H 0.12 2.40 6.71 -2.39 -0.02 2.38 16 37 H 0.16 2.12 6.30 -2.91 -0.02 2.10 16 38 H 0.16 1.47 8.06 -2.91 -0.02 1.44 16 39 H 0.15 2.03 8.06 -2.91 -0.02 2.00 16 40 H 0.14 3.76 5.79 -2.91 -0.02 3.74 16 41 H 0.42 10.45 8.19 -92.71 -0.76 9.69 16 42 H 0.10 1.20 7.92 -2.39 -0.02 1.18 16 43 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -82.54 371.99 4.49 -78.05 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: 0.27 Total: 19.55 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: 6.00 Total: 14.40 kcal Atomic # 7 Polarization: -96.59 SS G_CDS: -3.35 Total: -99.94 kcal Atomic # 8 Polarization: -58.14 SS G_CDS: -0.46 Total: -58.60 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -82.54 4.49 -78.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053327936.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.415 kcal (2) G-P(sol) polarization free energy of solvation -82.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds