Wall clock time and date at job start Tue Mar 31 2020 12:39:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 N 1.46501 * 109.47223 * 2 1
4 4 C 1.46497 * 119.99691 * 270.00125 * 3 2 1
5 5 C 1.50701 * 109.47030 * 269.99547 * 4 3 2
6 6 H 1.08002 * 119.99643 * 0.02562 * 5 4 3
7 7 C 1.37881 * 120.00174 * 180.02562 * 5 4 3
8 8 N 1.31516 * 119.99679 * 0.02562 * 7 5 4
9 9 Si 1.86799 * 120.00084 * 180.02562 * 7 5 4
10 10 H 1.48497 * 109.47176 * 89.99953 * 9 7 5
11 11 H 1.48498 * 109.47090 * 209.99968 * 9 7 5
12 12 H 1.48505 * 109.46881 * 330.00105 * 9 7 5
13 13 C 1.34774 * 119.99858 * 89.99435 * 3 2 1
14 14 O 1.21287 * 119.99527 * 179.97438 * 13 3 2
15 15 C 1.50696 * 120.00340 * 0.02562 * 13 3 2
16 16 O 1.45197 * 109.47317 * 179.97438 * 15 13 3
17 17 C 1.34767 * 117.00365 * 179.97438 * 16 15 13
18 18 O 1.21525 * 119.99862 * 359.97438 * 17 16 15
19 19 C 1.47284 * 120.00323 * 179.97438 * 17 16 15
20 20 C 1.39800 * 120.21379 * 354.14569 * 19 17 16
21 21 C 1.37722 * 119.92165 * 180.02562 * 20 19 17
22 22 C 1.38625 * 120.36324 * 0.02562 * 21 20 19
23 23 C 1.37957 * 120.43570 * 359.97438 * 22 21 20
24 24 C 1.38956 * 120.06660 * 0.02562 * 23 22 21
25 25 N 1.38834 * 120.17883 * 180.02562 * 24 23 22
26 26 C 1.46498 * 120.00080 * 5.56346 * 25 24 23
27 27 H 1.09000 * 109.47196 * 300.00001 * 1 2 3
28 28 H 1.08997 * 109.47439 * 60.00259 * 1 2 3
29 29 H 1.08995 * 109.47468 * 180.02562 * 1 2 3
30 30 H 1.08993 * 109.47235 * 239.99616 * 2 1 3
31 31 H 1.09001 * 109.46564 * 119.99924 * 2 1 3
32 32 H 1.09000 * 109.47343 * 30.00014 * 4 3 2
33 33 H 1.09005 * 109.46964 * 150.00197 * 4 3 2
34 34 H 0.96997 * 119.99795 * 179.97438 * 8 7 5
35 35 H 1.08992 * 109.47542 * 59.99269 * 15 13 3
36 36 H 1.09002 * 109.46715 * 299.99172 * 15 13 3
37 37 H 1.07997 * 120.04073 * 0.02562 * 20 19 17
38 38 H 1.08002 * 119.82170 * 180.02562 * 21 20 19
39 39 H 1.07996 * 119.78641 * 179.72356 * 22 21 20
40 40 H 1.08000 * 119.96644 * 179.97438 * 23 22 21
41 41 H 0.97001 * 119.99603 * 185.57110 * 25 24 23
42 42 H 1.09004 * 109.46656 * 60.00453 * 26 25 24
43 43 H 1.08999 * 109.47304 * 180.02562 * 26 25 24
44 44 H 1.08996 * 109.47253 * 300.00567 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.2625 2.0718 -1.2687
5 6 3.6858 1.8350 -1.7037
6 1 4.3426 1.2302 -1.0961
7 6 4.1494 2.3904 -2.8775
8 7 3.3497 3.1272 -3.6171
9 14 5.9135 2.0963 -3.4170
10 1 5.9762 0.8758 -4.2605
11 1 6.3930 3.2639 -4.1993
12 1 6.7736 1.9155 -2.2200
13 6 2.2429 2.0166 1.1672
14 8 2.6476 3.1599 1.1671
15 6 1.9921 1.3061 2.4723
16 8 2.3070 2.1955 3.5759
17 6 2.1353 1.7100 4.8213
18 8 1.7328 0.5744 4.9806
19 6 2.4352 2.5555 5.9893
20 6 3.0129 3.8166 5.8151
21 6 3.2913 4.6021 6.9116
22 6 3.0024 4.1492 8.1895
23 6 2.4324 2.9073 8.3786
24 6 2.1439 2.0999 7.2851
25 7 1.5697 0.8498 7.4726
26 6 1.1544 0.4281 8.8127
27 1 -0.3633 0.5138 0.8900
28 1 -0.3634 0.5138 -0.8900
29 1 -0.3634 -1.0276 0.0005
30 1 1.8933 -0.5139 -0.8899
31 1 1.8932 -0.5138 0.8900
32 1 1.5817 1.6876 -2.0284
33 1 2.0956 3.1410 -1.1384
34 1 3.6759 3.5183 -4.4427
35 1 2.6225 0.4188 2.5299
36 1 0.9442 1.0117 2.5302
37 1 3.2405 4.1745 4.8219
38 1 3.7372 5.5763 6.7751
39 1 3.2288 4.7710 9.0430
40 1 2.2109 2.5618 9.3776
41 1 1.4437 0.2557 6.7163
42 1 0.4061 1.1218 9.1962
43 1 0.7292 -0.5743 8.7627
44 1 2.0190 0.4231 9.4763
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000060840774.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:39:54
Heat of formation + Delta-G solvation = -82.796318 kcal
Electronic energy + Delta-G solvation = -26546.292248 eV
Core-core repulsion = 22657.211726 eV
Total energy + Delta-G solvation = -3889.080522 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.157 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-40.83732 -39.41565 -38.64197 -36.55043 -35.56697 -35.26796 -32.84792 -31.69426
-30.18182 -29.92977 -29.09283 -26.70404 -26.09190 -24.27441 -23.08437 -22.58980
-21.65226 -21.16381 -18.72879 -18.09785 -17.46658 -16.87507 -16.65109 -16.40543
-16.27989 -15.76517 -15.41516 -14.79932 -14.65139 -14.40094 -14.34550 -14.11472
-13.89631 -13.47232 -13.35144 -12.97322 -12.67199 -12.56594 -12.44178 -12.15457
-12.07935 -12.04821 -11.63510 -11.39712 -11.23697 -10.94733 -10.88644 -10.62073
-10.53264 -10.44658 -10.38153 -10.14895 -9.66396 -9.21484 -8.99739 -8.45045
-7.75715 -7.71033 -6.06081 -4.10926 0.66798 1.42338 2.46721 2.49891
3.25042 3.26928 3.29995 3.36912 3.42038 3.71737 3.88907 4.43454
4.58610 4.72947 4.83924 4.86113 4.88613 5.09730 5.11717 5.19607
5.21577 5.27881 5.28680 5.35542 5.36011 5.42515 5.57878 5.72308
5.78672 5.92312 5.98762 6.17445 6.18302 6.27317 6.40248 6.43922
6.59786 6.99102 7.04307 7.39368 7.46281 7.55172 7.79541 7.90140
8.20089 8.29314 8.84291 8.99093 9.54146 11.02115
Molecular weight = 320.16amu
Principal moments of inertia in cm(-1)
A = 0.017507 B = 0.002824 C = 0.002569
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1598.973431 B = 9913.672902 C =10895.664774
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C 0.102 3.898
3 N -0.592 5.592
4 C 0.248 3.752
5 C -0.528 4.528
6 H 0.058 0.942
7 C 0.062 3.938
8 N -0.894 5.894
9 Si 0.899 3.101
10 H -0.280 1.280
11 H -0.285 1.285
12 H -0.274 1.274
13 C 0.507 3.493
14 O -0.518 6.518
15 C 0.050 3.950
16 O -0.321 6.321
17 C 0.523 3.477
18 O -0.532 6.532
19 C -0.217 4.217
20 C -0.006 4.006
21 C -0.198 4.198
22 C -0.033 4.033
23 C -0.220 4.220
24 C 0.280 3.720
25 N -0.733 5.733
26 C 0.085 3.915
27 H 0.049 0.951
28 H 0.063 0.937
29 H 0.062 0.938
30 H 0.087 0.913
31 H 0.064 0.936
32 H 0.036 0.964
33 H 0.045 0.955
34 H 0.264 0.736
35 H 0.096 0.904
36 H 0.095 0.905
37 H 0.143 0.857
38 H 0.128 0.872
39 H 0.126 0.874
40 H 0.128 0.872
41 H 0.419 0.581
42 H 0.054 0.946
43 H 0.075 0.925
44 H 0.054 0.946
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.536 -4.846 23.596 24.717
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.229 4.229
2 C -0.022 4.022
3 N -0.326 5.326
4 C 0.129 3.871
5 C -0.567 4.567
6 H 0.076 0.924
7 C -0.141 4.141
8 N -0.533 5.533
9 Si 0.726 3.274
10 H -0.206 1.206
11 H -0.211 1.211
12 H -0.198 1.198
13 C 0.291 3.709
14 O -0.394 6.394
15 C -0.027 4.027
16 O -0.235 6.235
17 C 0.372 3.628
18 O -0.424 6.424
19 C -0.223 4.223
20 C -0.025 4.025
21 C -0.218 4.218
22 C -0.052 4.052
23 C -0.242 4.242
24 C 0.169 3.831
25 N -0.371 5.371
26 C -0.060 4.060
27 H 0.069 0.931
28 H 0.082 0.918
29 H 0.081 0.919
30 H 0.106 0.894
31 H 0.082 0.918
32 H 0.054 0.946
33 H 0.063 0.937
34 H 0.073 0.927
35 H 0.114 0.886
36 H 0.113 0.887
37 H 0.160 0.840
38 H 0.146 0.854
39 H 0.144 0.856
40 H 0.146 0.854
41 H 0.267 0.733
42 H 0.073 0.927
43 H 0.094 0.906
44 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -5.522 -4.564 23.539 24.605
hybrid contribution 0.820 -0.647 -0.673 1.243
sum -4.701 -5.212 22.866 23.919
Atomic orbital electron populations
1.22233 0.96548 1.01668 1.02425 1.21505 0.93742 0.83981 1.03012
1.48203 1.63849 1.13385 1.07129 1.19332 0.96467 0.93728 0.77549
1.21429 0.96860 1.32052 1.06367 0.92393 1.24933 0.97922 0.94841
0.96361 1.69930 1.35740 1.33288 1.14359 0.86484 0.84591 0.77675
0.78609 1.20646 1.21053 1.19846 1.19697 0.79732 0.87158 0.84274
1.90716 1.44433 1.17491 1.86731 1.22976 1.02702 0.92658 0.84359
1.86625 1.78543 1.44376 1.13922 1.21075 0.73384 0.85021 0.83364
1.90435 1.45992 1.20297 1.85668 1.18474 1.17065 0.98018 0.88748
1.21415 0.90112 0.90600 1.00336 1.20915 1.07263 1.01510 0.92110
1.21158 0.92495 0.94166 0.97356 1.20595 1.09927 0.96524 0.97172
1.17763 0.88087 0.85550 0.91652 1.45481 1.64395 1.15745 1.11484
1.21642 0.99508 1.00386 0.84512 0.93145 0.91771 0.91921 0.89418
0.91771 0.94644 0.93678 0.92667 0.88642 0.88730 0.83959 0.85424
0.85619 0.85374 0.73301 0.92699 0.90599 0.92709
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.26 10.24 37.16 0.38 -1.88 16
2 C 0.10 1.61 5.93 -4.04 -0.02 1.58 16
3 N -0.59 -12.44 2.46 -175.06 -0.43 -12.87 16
4 C 0.25 6.41 5.16 -5.19 -0.03 6.39 16
5 C -0.53 -14.90 9.39 -34.44 -0.32 -15.23 16
6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16
7 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16
8 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16
9 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16
10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16
11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16
12 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16
13 C 0.51 10.80 7.75 -10.99 -0.09 10.72 16
14 O -0.52 -13.37 16.08 -14.11 -0.23 -13.60 16
15 C 0.05 0.84 4.51 36.00 0.16 1.00 16
16 O -0.32 -5.55 9.02 -47.36 -0.43 -5.98 16
17 C 0.52 8.07 7.87 34.41 0.27 8.34 16
18 O -0.53 -8.22 13.44 -19.29 -0.26 -8.47 16
19 C -0.22 -2.95 5.89 -104.82 -0.62 -3.56 16
20 C -0.01 -0.08 9.61 -39.19 -0.38 -0.45 16
21 C -0.20 -2.00 10.02 -39.63 -0.40 -2.39 16
22 C -0.03 -0.29 10.03 -39.54 -0.40 -0.68 16
23 C -0.22 -2.07 9.30 -39.42 -0.37 -2.44 16
24 C 0.28 3.29 6.65 -83.61 -0.56 2.74 16
25 N -0.73 -7.88 5.74 -65.20 -0.37 -8.25 16
26 C 0.08 0.57 9.97 59.85 0.60 1.17 16
27 H 0.05 0.65 7.22 -51.93 -0.38 0.27 16
28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16
29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16
30 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16
31 H 0.06 0.85 6.44 -51.93 -0.33 0.52 16
32 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16
33 H 0.05 1.32 7.42 -51.93 -0.39 0.93 16
34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16
35 H 0.10 1.43 7.40 -51.93 -0.38 1.04 16
36 H 0.09 1.36 7.18 -51.93 -0.37 0.99 16
37 H 0.14 1.87 7.62 -52.49 -0.40 1.47 16
38 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16
39 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16
40 H 0.13 0.91 6.72 -52.49 -0.35 0.56 16
41 H 0.42 5.10 5.34 -40.94 -0.22 4.88 16
42 H 0.05 0.33 8.13 -51.93 -0.42 -0.09 16
43 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16
44 H 0.05 0.32 7.73 -51.93 -0.40 -0.08 16
LS Contribution 372.66 15.07 5.62 5.62
Total: -1.00 -34.16 372.66 -8.39 -42.55
By element:
Atomic # 1 Polarization: 9.10 SS G_CDS: -6.14 Total: 2.96 kcal
Atomic # 6 Polarization: 8.81 SS G_CDS: -1.86 Total: 6.96 kcal
Atomic # 7 Polarization: -46.78 SS G_CDS: -0.07 Total: -46.85 kcal
Atomic # 8 Polarization: -27.14 SS G_CDS: -0.91 Total: -28.06 kcal
Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal
Total LS contribution 5.62 Total: 5.62 kcal
Total: -34.16 -8.39 -42.55 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000060840774.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -40.246 kcal
(2) G-P(sol) polarization free energy of solvation -34.164 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.410 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.550 kcal
(6) G-S(sol) free energy of system = (1) + (5) -82.796 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds