Wall clock time and date at job start Tue Mar 31 2020 12:39:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 N 1.46501 * 109.47223 * 2 1
4 4 C 1.46497 * 119.99691 * 270.00125 * 3 2 1
5 5 C 1.50701 * 109.47030 * 269.99547 * 4 3 2
6 6 H 1.08002 * 119.99643 * 0.02562 * 5 4 3
7 7 C 1.37881 * 120.00174 * 180.02562 * 5 4 3
8 8 N 1.31516 * 119.99679 * 0.02562 * 7 5 4
9 9 Si 1.86799 * 120.00084 * 180.02562 * 7 5 4
10 10 H 1.48497 * 109.47176 * 89.99953 * 9 7 5
11 11 H 1.48498 * 109.47090 * 209.99968 * 9 7 5
12 12 H 1.48505 * 109.46881 * 330.00105 * 9 7 5
13 13 C 1.34774 * 119.99858 * 89.99435 * 3 2 1
14 14 O 1.21287 * 119.99527 * 179.97438 * 13 3 2
15 15 C 1.50696 * 120.00340 * 0.02562 * 13 3 2
16 16 O 1.45197 * 109.47317 * 179.97438 * 15 13 3
17 17 C 1.34767 * 117.00365 * 179.97438 * 16 15 13
18 18 O 1.21525 * 119.99862 * 359.97438 * 17 16 15
19 19 C 1.47284 * 120.00323 * 179.97438 * 17 16 15
20 20 C 1.39800 * 120.21379 * 354.14569 * 19 17 16
21 21 C 1.37722 * 119.92165 * 180.02562 * 20 19 17
22 22 C 1.38625 * 120.36324 * 0.02562 * 21 20 19
23 23 C 1.37957 * 120.43570 * 359.97438 * 22 21 20
24 24 C 1.38956 * 120.06660 * 0.02562 * 23 22 21
25 25 N 1.38834 * 120.17883 * 180.02562 * 24 23 22
26 26 C 1.46498 * 120.00080 * 5.56346 * 25 24 23
27 27 H 1.09000 * 109.47196 * 300.00001 * 1 2 3
28 28 H 1.08997 * 109.47439 * 60.00259 * 1 2 3
29 29 H 1.08995 * 109.47468 * 180.02562 * 1 2 3
30 30 H 1.08993 * 109.47235 * 239.99616 * 2 1 3
31 31 H 1.09001 * 109.46564 * 119.99924 * 2 1 3
32 32 H 1.09000 * 109.47343 * 30.00014 * 4 3 2
33 33 H 1.09005 * 109.46964 * 150.00197 * 4 3 2
34 34 H 0.96997 * 119.99795 * 179.97438 * 8 7 5
35 35 H 1.08992 * 109.47542 * 59.99269 * 15 13 3
36 36 H 1.09002 * 109.46715 * 299.99172 * 15 13 3
37 37 H 1.07997 * 120.04073 * 0.02562 * 20 19 17
38 38 H 1.08002 * 119.82170 * 180.02562 * 21 20 19
39 39 H 1.07996 * 119.78641 * 179.72356 * 22 21 20
40 40 H 1.08000 * 119.96644 * 179.97438 * 23 22 21
41 41 H 0.97001 * 119.99603 * 185.57110 * 25 24 23
42 42 H 1.09004 * 109.46656 * 60.00453 * 26 25 24
43 43 H 1.08999 * 109.47304 * 180.02562 * 26 25 24
44 44 H 1.08996 * 109.47253 * 300.00567 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.2625 2.0718 -1.2687
5 6 3.6858 1.8350 -1.7037
6 1 4.3426 1.2302 -1.0961
7 6 4.1494 2.3904 -2.8775
8 7 3.3497 3.1272 -3.6171
9 14 5.9135 2.0963 -3.4170
10 1 5.9762 0.8758 -4.2605
11 1 6.3930 3.2639 -4.1993
12 1 6.7736 1.9155 -2.2200
13 6 2.2429 2.0166 1.1672
14 8 2.6476 3.1599 1.1671
15 6 1.9921 1.3061 2.4723
16 8 2.3070 2.1955 3.5759
17 6 2.1353 1.7100 4.8213
18 8 1.7328 0.5744 4.9806
19 6 2.4352 2.5555 5.9893
20 6 3.0129 3.8166 5.8151
21 6 3.2913 4.6021 6.9116
22 6 3.0024 4.1492 8.1895
23 6 2.4324 2.9073 8.3786
24 6 2.1439 2.0999 7.2851
25 7 1.5697 0.8498 7.4726
26 6 1.1544 0.4281 8.8127
27 1 -0.3633 0.5138 0.8900
28 1 -0.3634 0.5138 -0.8900
29 1 -0.3634 -1.0276 0.0005
30 1 1.8933 -0.5139 -0.8899
31 1 1.8932 -0.5138 0.8900
32 1 1.5817 1.6876 -2.0284
33 1 2.0956 3.1410 -1.1384
34 1 3.6759 3.5183 -4.4427
35 1 2.6225 0.4188 2.5299
36 1 0.9442 1.0117 2.5302
37 1 3.2405 4.1745 4.8219
38 1 3.7372 5.5763 6.7751
39 1 3.2288 4.7710 9.0430
40 1 2.2109 2.5618 9.3776
41 1 1.4437 0.2557 6.7163
42 1 0.4061 1.1218 9.1962
43 1 0.7292 -0.5743 8.7627
44 1 2.0190 0.4231 9.4763
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000060840774.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:39:53
Heat of formation + Delta-G solvation = -103.534833 kcal
Electronic energy + Delta-G solvation = -26547.191538 eV
Core-core repulsion = 22657.211726 eV
Total energy + Delta-G solvation = -3889.979811 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.157 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-41.96322 -40.80376 -39.83355 -37.71682 -37.01869 -36.33318 -34.95019 -32.58930
-31.73898 -30.68419 -30.56683 -28.45578 -26.85249 -25.40064 -24.72433 -24.09541
-22.48766 -22.20914 -20.30432 -19.24177 -18.65228 -18.39615 -18.00853 -17.76891
-17.68835 -17.07380 -16.70327 -16.30032 -16.07605 -15.40835 -15.24664 -15.10929
-14.82042 -14.76943 -14.61748 -14.49113 -13.98744 -13.81360 -13.63175 -13.37596
-13.29251 -13.09010 -12.97406 -12.95456 -12.69285 -12.52185 -12.24720 -12.17647
-12.08468 -11.82691 -11.73439 -11.46279 -11.14609 -10.75283 -10.65177 -10.04549
-9.56490 -8.49325 -8.24282 -6.38829 -0.23754 0.61679 1.23314 1.36247
1.39400 1.44106 1.49705 1.59980 2.31505 2.44413 2.53630 2.87513
3.05792 3.40297 3.58851 3.84549 3.91357 3.94389 4.12838 4.15333
4.33707 4.36020 4.45868 4.47887 4.56869 4.63368 4.66549 4.85794
4.89910 4.92556 4.98478 5.01180 5.12826 5.14550 5.19830 5.34205
5.43235 5.52771 5.60544 5.78234 5.83651 6.02937 6.30238 6.46519
6.60408 6.70171 6.82147 7.19317 7.35094 8.83297
Molecular weight = 320.16amu
Principal moments of inertia in cm(-1)
A = 0.017507 B = 0.002824 C = 0.002569
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1598.973431 B = 9913.672902 C =10895.664774
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C 0.094 3.906
3 N -0.594 5.594
4 C 0.263 3.737
5 C -0.546 4.546
6 H 0.054 0.946
7 C 0.009 3.991
8 N -0.927 5.927
9 Si 0.968 3.032
10 H -0.262 1.262
11 H -0.280 1.280
12 H -0.274 1.274
13 C 0.499 3.501
14 O -0.577 6.577
15 C 0.063 3.937
16 O -0.343 6.343
17 C 0.518 3.482
18 O -0.537 6.537
19 C -0.247 4.247
20 C -0.027 4.027
21 C -0.200 4.200
22 C -0.021 4.021
23 C -0.216 4.216
24 C 0.270 3.730
25 N -0.740 5.740
26 C 0.078 3.922
27 H 0.056 0.944
28 H 0.044 0.956
29 H 0.098 0.902
30 H 0.082 0.918
31 H 0.097 0.903
32 H 0.030 0.970
33 H -0.001 1.001
34 H 0.268 0.732
35 H 0.117 0.883
36 H 0.122 0.878
37 H 0.121 0.879
38 H 0.145 0.855
39 H 0.165 0.835
40 H 0.158 0.842
41 H 0.411 0.589
42 H 0.066 0.934
43 H 0.089 0.911
44 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.273 -6.392 26.410 27.680
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C -0.028 4.028
3 N -0.327 5.327
4 C 0.142 3.858
5 C -0.584 4.584
6 H 0.072 0.928
7 C -0.190 4.190
8 N -0.567 5.567
9 Si 0.792 3.208
10 H -0.187 1.187
11 H -0.206 1.206
12 H -0.199 1.199
13 C 0.286 3.714
14 O -0.456 6.456
15 C -0.013 4.013
16 O -0.258 6.258
17 C 0.369 3.631
18 O -0.430 6.430
19 C -0.253 4.253
20 C -0.046 4.046
21 C -0.219 4.219
22 C -0.040 4.040
23 C -0.238 4.238
24 C 0.159 3.841
25 N -0.375 5.375
26 C -0.065 4.065
27 H 0.075 0.925
28 H 0.064 0.936
29 H 0.117 0.883
30 H 0.101 0.899
31 H 0.115 0.885
32 H 0.048 0.952
33 H 0.018 0.982
34 H 0.077 0.923
35 H 0.135 0.865
36 H 0.140 0.860
37 H 0.139 0.861
38 H 0.163 0.837
39 H 0.182 0.818
40 H 0.175 0.825
41 H 0.256 0.744
42 H 0.084 0.916
43 H 0.108 0.892
44 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -5.293 -6.173 26.386 27.611
hybrid contribution 0.688 -0.161 -1.440 1.605
sum -4.604 -6.334 24.946 26.146
Atomic orbital electron populations
1.22173 0.94305 1.03807 1.01811 1.21869 0.95576 0.80968 1.04406
1.48199 1.63588 1.15256 1.05629 1.18798 0.95626 0.91669 0.79712
1.21698 0.97806 1.32234 1.06673 0.92810 1.25850 1.02430 0.94374
0.96376 1.70047 1.37805 1.34005 1.14824 0.85405 0.78906 0.78249
0.78192 1.18712 1.20574 1.19871 1.20518 0.78382 0.86662 0.85814
1.90678 1.47062 1.20157 1.87740 1.22828 1.04669 0.92011 0.81841
1.86629 1.79207 1.45170 1.14835 1.21467 0.73305 0.85397 0.82980
1.90417 1.46565 1.20399 1.85618 1.18575 1.19337 0.98541 0.88894
1.21368 0.91620 0.91165 1.00424 1.21186 1.06753 1.01864 0.92135
1.21597 0.90498 0.94117 0.97759 1.20980 1.08851 0.96290 0.97656
1.18020 0.88216 0.86334 0.91502 1.45674 1.63921 1.15197 1.12733
1.21892 1.00431 1.01418 0.82809 0.92538 0.93648 0.88311 0.89905
0.88472 0.95175 0.98244 0.92320 0.86495 0.86041 0.86060 0.83706
0.81785 0.82492 0.74365 0.91590 0.89234 0.91286
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -4.07 10.24 71.98 0.74 -3.34 16
2 C 0.09 2.87 5.93 86.38 0.51 3.38 16
3 N -0.59 -25.69 2.46 -826.16 -2.03 -27.72 16
4 C 0.26 14.31 5.16 85.63 0.44 14.75 16
5 C -0.55 -31.75 9.39 25.60 0.24 -31.51 16
6 H 0.05 3.10 7.81 -2.91 -0.02 3.07 16
7 C 0.01 0.52 5.46 84.66 0.46 0.98 16
8 N -0.93 -56.36 13.29 21.45 0.28 -56.08 16
9 Si 0.97 45.28 29.54 68.60 2.03 47.31 16
10 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16
11 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16
12 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16
13 C 0.50 22.05 7.75 87.66 0.68 22.73 16
14 O -0.58 -31.69 16.08 15.75 0.25 -31.44 16
15 C 0.06 2.09 4.51 71.23 0.32 2.41 16
16 O -0.34 -12.32 9.02 -50.39 -0.45 -12.77 16
17 C 0.52 16.28 7.87 70.20 0.55 16.83 16
18 O -0.54 -16.38 13.44 19.75 0.27 -16.11 16
19 C -0.25 -6.79 5.89 -19.99 -0.12 -6.91 16
20 C -0.03 -0.70 9.61 22.53 0.22 -0.48 16
21 C -0.20 -3.77 10.02 22.24 0.22 -3.55 16
22 C -0.02 -0.30 10.03 22.30 0.22 -0.07 16
23 C -0.22 -3.41 9.30 22.38 0.21 -3.21 16
24 C 0.27 6.00 6.65 38.73 0.26 6.26 16
25 N -0.74 -14.69 5.74 -360.19 -2.07 -16.76 16
26 C 0.08 0.84 9.97 127.77 1.27 2.11 16
27 H 0.06 1.35 7.22 -2.39 -0.02 1.33 16
28 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16
29 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16
30 H 0.08 2.63 8.07 -2.39 -0.02 2.61 16
31 H 0.10 2.35 6.44 -2.39 -0.02 2.34 16
32 H 0.03 1.65 8.07 -2.39 -0.02 1.63 16
33 H 0.00 -0.04 7.42 -2.38 -0.02 -0.05 16
34 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16
35 H 0.12 3.34 7.40 -2.39 -0.02 3.33 16
36 H 0.12 3.33 7.18 -2.39 -0.02 3.32 16
37 H 0.12 3.53 7.62 -2.91 -0.02 3.50 16
38 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16
39 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16
40 H 0.16 1.54 6.72 -2.91 -0.02 1.52 16
41 H 0.41 9.58 5.34 -94.59 -0.51 9.07 16
42 H 0.07 0.58 8.13 -2.38 -0.02 0.56 16
43 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16
44 H 0.07 0.56 7.73 -2.39 -0.02 0.54 16
Total: -1.00 -78.93 372.66 5.02 -73.90
By element:
Atomic # 1 Polarization: 18.76 SS G_CDS: 0.51 Total: 19.28 kcal
Atomic # 6 Polarization: 14.16 SS G_CDS: 6.23 Total: 20.39 kcal
Atomic # 7 Polarization: -96.75 SS G_CDS: -3.81 Total: -100.56 kcal
Atomic # 8 Polarization: -60.39 SS G_CDS: 0.06 Total: -60.32 kcal
Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal
Total: -78.93 5.02 -73.90 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000060840774.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -29.632 kcal
(2) G-P(sol) polarization free energy of solvation -78.925 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.558 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.023 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.902 kcal
(6) G-S(sol) free energy of system = (1) + (5) -103.535 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds