Wall clock time and date at job start Tue Mar 31 2020 12:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46508 * 109.47409 * 2 1 4 4 C 1.46494 * 120.00132 * 270.00506 * 3 2 1 5 5 C 1.50701 * 109.46881 * 269.99735 * 4 3 2 6 6 H 1.07998 * 119.99883 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99832 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00039 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99957 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47292 * 89.99968 * 9 7 5 11 11 H 1.48500 * 109.46681 * 210.00105 * 9 7 5 12 12 H 1.48498 * 109.46851 * 329.99631 * 9 7 5 13 13 C 1.34779 * 119.99381 * 89.99906 * 3 2 1 14 14 O 1.21279 * 119.99670 * 180.02562 * 13 3 2 15 15 C 1.50695 * 120.00244 * 0.02562 * 13 3 2 16 16 O 1.45206 * 109.47321 * 179.97438 * 15 13 3 17 17 C 1.34767 * 117.00335 * 179.97438 * 16 15 13 18 18 O 1.21519 * 119.99770 * 0.27559 * 17 16 15 19 19 C 1.47287 * 119.99914 * 179.97438 * 17 16 15 20 20 C 1.39804 * 120.21544 * 6.05260 * 19 17 16 21 21 C 1.37713 * 119.92045 * 179.76311 * 20 19 17 22 22 C 1.50702 * 119.81765 * 180.25072 * 21 20 19 23 23 C 1.38633 * 120.36128 * 0.51481 * 21 20 19 24 24 C 1.37948 * 120.43598 * 359.73982 * 23 21 20 25 25 C 1.38959 * 120.07040 * 0.02562 * 24 23 21 26 26 N 1.38825 * 120.18393 * 179.97438 * 25 24 23 27 27 H 1.09004 * 109.47460 * 59.99437 * 1 2 3 28 28 H 1.08996 * 109.47400 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47410 * 300.00056 * 1 2 3 30 30 H 1.09003 * 109.47387 * 240.00500 * 2 1 3 31 31 H 1.08996 * 109.47602 * 120.00312 * 2 1 3 32 32 H 1.09002 * 109.47603 * 29.99587 * 4 3 2 33 33 H 1.08998 * 109.47082 * 149.99891 * 4 3 2 34 34 H 0.96999 * 120.00317 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.47552 * 59.99910 * 15 13 3 36 36 H 1.09001 * 109.47216 * 299.99461 * 15 13 3 37 37 H 1.08005 * 120.03871 * 0.02562 * 20 19 17 38 38 H 1.08997 * 109.47136 * 270.25628 * 22 21 20 39 39 H 1.08996 * 109.46944 * 30.26235 * 22 21 20 40 40 H 1.09005 * 109.46725 * 150.26002 * 22 21 20 41 41 H 1.08003 * 119.77984 * 179.71580 * 23 21 20 42 42 H 1.08005 * 119.96456 * 179.97438 * 24 23 21 43 43 H 0.96997 * 120.00223 * 202.60703 * 26 25 24 44 44 H 0.97007 * 119.99620 * 22.59731 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3426 1.2302 -1.0962 7 6 4.1493 2.3906 -2.8774 8 7 5.3915 2.1843 -3.2569 9 14 3.0134 3.4373 -3.9279 10 1 3.1172 4.8572 -3.5056 11 1 3.4064 3.3152 -5.3547 12 1 1.6136 2.9715 -3.7584 13 6 2.2430 2.0165 1.1673 14 8 2.6468 3.1601 1.1674 15 6 1.9923 1.3059 2.4723 16 8 2.3073 2.1952 3.5761 17 6 2.1355 1.7095 4.8214 18 8 1.7383 0.5722 4.9805 19 6 2.4356 2.5550 5.9895 20 6 2.7770 3.8996 5.8157 21 6 3.0516 4.6858 6.9124 22 6 3.4138 6.1363 6.7228 23 6 3.0020 4.1489 8.1896 24 6 2.6720 2.8228 8.3779 25 6 2.3868 2.0143 7.2843 26 7 2.0549 0.6793 7.4710 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.5817 1.6879 -2.0284 33 1 2.0955 3.1411 -1.1383 34 1 5.7176 2.5748 -4.0828 35 1 2.6227 0.4186 2.5299 36 1 0.9444 1.0114 2.5302 37 1 2.8211 4.3222 4.8227 38 1 4.4937 6.2291 6.6077 39 1 2.9190 6.5207 5.8310 40 1 3.0907 6.7082 7.5927 41 1 3.2237 4.7730 9.0428 42 1 2.6361 2.4123 9.3762 43 1 2.1746 0.0440 6.7478 44 1 1.7034 0.3817 8.3248 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061208403.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:58 Heat of formation + Delta-G solvation = -90.211915 kcal Electronic energy + Delta-G solvation = -26571.225758 eV Core-core repulsion = 22681.823672 eV Total energy + Delta-G solvation = -3889.402086 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.81048 -39.48402 -38.74642 -36.54628 -35.44115 -34.98941 -32.77437 -31.72477 -30.96924 -30.45498 -29.22515 -27.03813 -26.01555 -24.33124 -23.05756 -22.57419 -21.87345 -20.56739 -18.67108 -17.92996 -17.25935 -17.11344 -16.95356 -16.66912 -16.44015 -16.02879 -15.38901 -14.79255 -14.54556 -14.39352 -14.01121 -13.93085 -13.82859 -13.56513 -13.44120 -12.92293 -12.67710 -12.59964 -12.40565 -12.28077 -12.20018 -11.98646 -11.83281 -11.47591 -11.42395 -11.03186 -10.90306 -10.62952 -10.58283 -10.52201 -10.27939 -10.18163 -9.56913 -9.23809 -9.11347 -8.60584 -7.82871 -7.75994 -6.10269 -4.09644 0.64987 1.33880 2.43707 2.48139 3.16644 3.28350 3.34161 3.36212 3.64082 3.70875 3.78151 4.38053 4.53901 4.70772 4.73620 4.79516 5.03592 5.07957 5.16836 5.22274 5.23071 5.29027 5.35112 5.48015 5.49029 5.56286 5.65159 5.82211 5.88324 5.92151 5.96711 6.06630 6.09352 6.27765 6.34593 6.45674 6.63731 6.66191 6.89157 7.23102 7.25467 7.57459 7.61947 7.75114 8.10644 8.43570 8.81437 8.93388 9.49259 11.03047 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016270 B = 0.002983 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.592936 B = 9383.554307 C =10531.780112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.588 5.588 4 C 0.218 3.782 5 C -0.531 4.531 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.510 3.490 14 O -0.517 6.517 15 C 0.052 3.948 16 O -0.323 6.323 17 C 0.519 3.481 18 O -0.526 6.526 19 C -0.205 4.205 20 C -0.012 4.012 21 C -0.158 4.158 22 C -0.107 4.107 23 C -0.037 4.037 24 C -0.208 4.208 25 C 0.275 3.725 26 N -0.861 5.861 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.033 0.967 33 H 0.038 0.962 34 H 0.265 0.735 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.142 0.858 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.126 0.874 42 H 0.129 0.871 43 H 0.413 0.587 44 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.215 -1.183 22.320 24.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.321 5.321 4 C 0.098 3.902 5 C -0.570 4.570 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.535 5.535 9 Si 0.703 3.297 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.190 1.190 13 C 0.294 3.706 14 O -0.392 6.392 15 C -0.025 4.025 16 O -0.238 6.238 17 C 0.367 3.633 18 O -0.417 6.417 19 C -0.211 4.211 20 C -0.031 4.031 21 C -0.160 4.160 22 C -0.164 4.164 23 C -0.055 4.055 24 C -0.231 4.231 25 C 0.165 3.835 26 N -0.406 5.406 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.108 0.892 31 H 0.086 0.914 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.160 0.840 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.144 0.856 42 H 0.147 0.853 43 H 0.251 0.749 44 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -8.965 -0.858 22.093 23.858 hybrid contribution -0.567 -0.172 -0.638 0.871 sum -9.532 -1.031 21.456 23.500 Atomic orbital electron populations 1.22245 0.96499 1.01866 1.02331 1.21539 0.93639 0.83587 1.03482 1.47868 1.64261 1.13540 1.06459 1.19697 0.97512 0.93439 0.79528 1.21320 0.95277 1.33105 1.07273 0.90689 1.24852 0.95007 0.95758 0.97326 1.69894 1.15112 1.44892 1.23556 0.86851 0.81420 0.81660 0.79765 1.19830 1.21043 1.19049 1.19716 0.79404 0.87130 0.84303 1.90712 1.44227 1.17566 1.86744 1.22915 1.02745 0.92674 0.84193 1.86621 1.78532 1.44594 1.14015 1.21046 0.73672 0.85308 0.83247 1.90591 1.45007 1.19923 1.86218 1.18609 1.18365 0.94800 0.89363 1.21306 0.90747 0.91192 0.99805 1.19667 1.06553 0.97137 0.92671 1.20689 1.01789 0.91405 1.02483 1.21040 0.93620 0.94176 0.96711 1.20645 1.10121 0.94883 0.97409 1.17634 0.89108 0.85222 0.91541 1.42939 1.71773 1.06506 1.19393 0.91973 0.91696 0.93027 0.89183 0.91393 0.94898 0.94407 0.92506 0.88482 0.88663 0.84020 0.91428 0.91400 0.91896 0.85572 0.85348 0.74942 0.77588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 10.24 37.15 0.38 -1.75 16 2 C 0.10 1.55 5.93 -4.04 -0.02 1.52 16 3 N -0.59 -11.97 2.46 -175.06 -0.43 -12.40 16 4 C 0.22 5.27 4.23 -5.20 -0.02 5.25 16 5 C -0.53 -15.18 9.94 -34.44 -0.34 -15.52 16 6 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 8 N -0.90 -27.58 13.96 55.43 0.77 -26.80 16 9 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 10 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 13 C 0.51 10.60 7.75 -10.99 -0.09 10.51 16 14 O -0.52 -13.00 16.08 -14.10 -0.23 -13.22 16 15 C 0.05 0.85 4.51 36.00 0.16 1.01 16 16 O -0.32 -5.52 9.02 -47.36 -0.43 -5.95 16 17 C 0.52 7.90 7.86 34.41 0.27 8.17 16 18 O -0.53 -7.99 13.59 -19.28 -0.26 -8.25 16 19 C -0.21 -2.73 5.89 -104.82 -0.62 -3.35 16 20 C -0.01 -0.15 9.25 -39.19 -0.36 -0.51 16 21 C -0.16 -1.62 5.87 -104.67 -0.61 -2.24 16 22 C -0.11 -0.89 10.00 36.01 0.36 -0.53 16 23 C -0.04 -0.32 9.67 -39.54 -0.38 -0.70 16 24 C -0.21 -1.87 9.92 -39.42 -0.39 -2.26 16 25 C 0.27 3.06 6.76 -83.61 -0.57 2.49 16 26 N -0.86 -8.23 8.53 32.55 0.28 -7.95 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.62 7.22 -51.93 -0.38 0.24 16 30 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16 31 H 0.07 0.89 6.44 -51.93 -0.33 0.55 16 32 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 33 H 0.04 0.98 6.85 -51.93 -0.36 0.62 16 34 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 35 H 0.10 1.44 7.40 -51.93 -0.38 1.05 16 36 H 0.10 1.32 7.18 -51.93 -0.37 0.95 16 37 H 0.14 1.88 7.63 -52.48 -0.40 1.48 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 40 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 41 H 0.13 0.76 8.06 -52.48 -0.42 0.33 16 42 H 0.13 0.83 8.06 -52.48 -0.42 0.40 16 43 H 0.41 4.52 6.03 -40.82 -0.25 4.27 16 44 H 0.40 2.59 8.90 -40.82 -0.36 2.23 16 LS Contribution 371.07 15.07 5.59 5.59 Total: -1.00 -35.09 371.07 -7.87 -42.96 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -6.16 Total: 5.14 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -2.33 Total: 4.13 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: 0.62 Total: -47.15 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.92 Total: -27.43 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.09 -7.87 -42.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061208403.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.255 kcal (2) G-P(sol) polarization free energy of solvation -35.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds