Wall clock time and date at job start Tue Mar 31 2020 12:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46508 * 109.47409 * 2 1 4 4 C 1.46494 * 120.00132 * 270.00506 * 3 2 1 5 5 C 1.50701 * 109.46881 * 269.99735 * 4 3 2 6 6 H 1.07998 * 119.99883 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99832 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00039 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99957 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47292 * 89.99968 * 9 7 5 11 11 H 1.48500 * 109.46681 * 210.00105 * 9 7 5 12 12 H 1.48498 * 109.46851 * 329.99631 * 9 7 5 13 13 C 1.34779 * 119.99381 * 89.99906 * 3 2 1 14 14 O 1.21279 * 119.99670 * 180.02562 * 13 3 2 15 15 C 1.50695 * 120.00244 * 0.02562 * 13 3 2 16 16 O 1.45206 * 109.47321 * 179.97438 * 15 13 3 17 17 C 1.34767 * 117.00335 * 179.97438 * 16 15 13 18 18 O 1.21519 * 119.99770 * 0.27559 * 17 16 15 19 19 C 1.47287 * 119.99914 * 179.97438 * 17 16 15 20 20 C 1.39804 * 120.21544 * 6.05260 * 19 17 16 21 21 C 1.37713 * 119.92045 * 179.76311 * 20 19 17 22 22 C 1.50702 * 119.81765 * 180.25072 * 21 20 19 23 23 C 1.38633 * 120.36128 * 0.51481 * 21 20 19 24 24 C 1.37948 * 120.43598 * 359.73982 * 23 21 20 25 25 C 1.38959 * 120.07040 * 0.02562 * 24 23 21 26 26 N 1.38825 * 120.18393 * 179.97438 * 25 24 23 27 27 H 1.09004 * 109.47460 * 59.99437 * 1 2 3 28 28 H 1.08996 * 109.47400 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47410 * 300.00056 * 1 2 3 30 30 H 1.09003 * 109.47387 * 240.00500 * 2 1 3 31 31 H 1.08996 * 109.47602 * 120.00312 * 2 1 3 32 32 H 1.09002 * 109.47603 * 29.99587 * 4 3 2 33 33 H 1.08998 * 109.47082 * 149.99891 * 4 3 2 34 34 H 0.96999 * 120.00317 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.47552 * 59.99910 * 15 13 3 36 36 H 1.09001 * 109.47216 * 299.99461 * 15 13 3 37 37 H 1.08005 * 120.03871 * 0.02562 * 20 19 17 38 38 H 1.08997 * 109.47136 * 270.25628 * 22 21 20 39 39 H 1.08996 * 109.46944 * 30.26235 * 22 21 20 40 40 H 1.09005 * 109.46725 * 150.26002 * 22 21 20 41 41 H 1.08003 * 119.77984 * 179.71580 * 23 21 20 42 42 H 1.08005 * 119.96456 * 179.97438 * 24 23 21 43 43 H 0.96997 * 120.00223 * 202.60703 * 26 25 24 44 44 H 0.97007 * 119.99620 * 22.59731 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3426 1.2302 -1.0962 7 6 4.1493 2.3906 -2.8774 8 7 5.3915 2.1843 -3.2569 9 14 3.0134 3.4373 -3.9279 10 1 3.1172 4.8572 -3.5056 11 1 3.4064 3.3152 -5.3547 12 1 1.6136 2.9715 -3.7584 13 6 2.2430 2.0165 1.1673 14 8 2.6468 3.1601 1.1674 15 6 1.9923 1.3059 2.4723 16 8 2.3073 2.1952 3.5761 17 6 2.1355 1.7095 4.8214 18 8 1.7383 0.5722 4.9805 19 6 2.4356 2.5550 5.9895 20 6 2.7770 3.8996 5.8157 21 6 3.0516 4.6858 6.9124 22 6 3.4138 6.1363 6.7228 23 6 3.0020 4.1489 8.1896 24 6 2.6720 2.8228 8.3779 25 6 2.3868 2.0143 7.2843 26 7 2.0549 0.6793 7.4710 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.5817 1.6879 -2.0284 33 1 2.0955 3.1411 -1.1383 34 1 5.7176 2.5748 -4.0828 35 1 2.6227 0.4186 2.5299 36 1 0.9444 1.0114 2.5302 37 1 2.8211 4.3222 4.8227 38 1 4.4937 6.2291 6.6077 39 1 2.9190 6.5207 5.8310 40 1 3.0907 6.7082 7.5927 41 1 3.2237 4.7730 9.0428 42 1 2.6361 2.4123 9.3762 43 1 2.1746 0.0440 6.7478 44 1 1.7034 0.3817 8.3248 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061208403.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:58 Heat of formation + Delta-G solvation = -112.854554 kcal Electronic energy + Delta-G solvation = -26572.207617 eV Core-core repulsion = 22681.823672 eV Total energy + Delta-G solvation = -3890.383945 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.93412 -40.84139 -39.89088 -37.72930 -37.05417 -35.83655 -34.89743 -32.65863 -32.01190 -31.68336 -30.67326 -28.74572 -26.78512 -25.36369 -24.49231 -24.07663 -22.98130 -21.54618 -20.23297 -19.15278 -19.04610 -18.25300 -18.06440 -17.82050 -17.64867 -17.36925 -16.90806 -16.33572 -15.91021 -15.36740 -15.25298 -14.83784 -14.80313 -14.72167 -14.65990 -14.46190 -14.11961 -13.85644 -13.77302 -13.44891 -13.35764 -13.18496 -12.99775 -12.78021 -12.58353 -12.44215 -12.18433 -12.15989 -12.03382 -11.81738 -11.75653 -11.59131 -11.13117 -10.84672 -10.81142 -10.05766 -9.55330 -8.54151 -8.35186 -6.41064 -0.24762 0.53953 1.21079 1.33235 1.37156 1.43990 1.45322 1.55304 2.30169 2.33418 2.80153 2.95470 2.98993 3.36825 3.57139 3.82840 3.91462 3.93292 4.03488 4.11597 4.34349 4.35190 4.40669 4.54029 4.56321 4.74300 4.80651 4.84066 4.92878 4.93395 4.97037 5.02405 5.12693 5.16842 5.24956 5.33971 5.34625 5.43298 5.54465 5.67996 5.89109 6.19962 6.41325 6.50217 6.60462 6.63633 6.93458 7.13184 7.26766 8.81820 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016270 B = 0.002983 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.592936 B = 9383.554307 C =10531.780112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.092 3.908 3 N -0.592 5.592 4 C 0.227 3.773 5 C -0.540 4.540 6 H 0.029 0.971 7 C 0.012 3.988 8 N -0.945 5.945 9 Si 0.948 3.052 10 H -0.276 1.276 11 H -0.274 1.274 12 H -0.236 1.236 13 C 0.501 3.499 14 O -0.573 6.573 15 C 0.063 3.937 16 O -0.346 6.346 17 C 0.515 3.485 18 O -0.531 6.531 19 C -0.234 4.234 20 C -0.035 4.035 21 C -0.163 4.163 22 C -0.107 4.107 23 C -0.027 4.027 24 C -0.200 4.200 25 C 0.269 3.731 26 N -0.855 5.855 27 H 0.053 0.947 28 H 0.097 0.903 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.057 0.943 33 H 0.021 0.979 34 H 0.269 0.731 35 H 0.113 0.887 36 H 0.125 0.875 37 H 0.119 0.881 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.087 0.913 41 H 0.163 0.837 42 H 0.162 0.838 43 H 0.407 0.593 44 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.386 -1.498 24.515 27.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.030 4.030 3 N -0.324 5.324 4 C 0.105 3.895 5 C -0.578 4.578 6 H 0.047 0.953 7 C -0.186 4.186 8 N -0.585 5.585 9 Si 0.770 3.230 10 H -0.202 1.202 11 H -0.199 1.199 12 H -0.159 1.159 13 C 0.288 3.712 14 O -0.453 6.453 15 C -0.014 4.014 16 O -0.261 6.261 17 C 0.364 3.636 18 O -0.423 6.423 19 C -0.241 4.241 20 C -0.054 4.054 21 C -0.165 4.165 22 C -0.164 4.164 23 C -0.046 4.046 24 C -0.222 4.222 25 C 0.158 3.842 26 N -0.400 5.400 27 H 0.072 0.928 28 H 0.115 0.885 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.111 0.889 32 H 0.074 0.926 33 H 0.039 0.961 34 H 0.078 0.922 35 H 0.131 0.869 36 H 0.143 0.857 37 H 0.137 0.863 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.106 0.894 41 H 0.181 0.819 42 H 0.179 0.821 43 H 0.243 0.757 44 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -11.177 -1.244 24.327 26.800 hybrid contribution 0.203 -0.130 -1.181 1.205 sum -10.975 -1.374 23.146 25.653 Atomic orbital electron populations 1.22178 0.93644 1.03954 1.02245 1.21898 0.95916 0.80729 1.04412 1.47965 1.63864 1.15347 1.05232 1.19380 0.95101 0.93153 0.81885 1.21550 0.97031 1.32357 1.06889 0.95298 1.25856 0.96743 0.97116 0.98916 1.70047 1.17438 1.46481 1.24500 0.85716 0.80520 0.78985 0.77751 1.20181 1.19937 1.15865 1.20510 0.78108 0.86692 0.85843 1.90674 1.46769 1.20125 1.87718 1.22812 1.04749 0.91947 0.81894 1.86628 1.79167 1.45403 1.14945 1.21448 0.73577 0.85660 0.82915 1.90568 1.45588 1.20026 1.86142 1.18714 1.20746 0.95033 0.89572 1.21236 0.92760 0.91601 0.99763 1.19939 1.05894 0.97785 0.92834 1.20733 1.01888 0.90565 1.03184 1.21462 0.91697 0.94485 0.96928 1.21048 1.08391 0.94704 0.98076 1.17856 0.89088 0.86008 0.91262 1.42913 1.71284 1.05815 1.19949 0.92808 0.88458 0.92382 0.89914 0.88937 0.92551 0.96115 0.92193 0.86901 0.85702 0.86313 0.91166 0.92416 0.89447 0.81932 0.82055 0.75707 0.75805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.59 10.24 71.98 0.74 -2.86 16 2 C 0.09 2.70 5.93 86.38 0.51 3.21 16 3 N -0.59 -24.29 2.46 -826.17 -2.03 -26.32 16 4 C 0.23 11.07 4.23 85.63 0.36 11.43 16 5 C -0.54 -32.01 9.94 25.60 0.25 -31.75 16 6 H 0.03 1.92 8.06 -2.91 -0.02 1.89 16 7 C 0.01 0.70 5.47 84.66 0.46 1.17 16 8 N -0.94 -60.13 13.96 21.45 0.30 -59.83 16 9 Si 0.95 44.46 27.47 68.60 1.88 46.35 16 10 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.24 -9.83 6.54 99.48 0.65 -9.17 16 13 C 0.50 21.42 7.75 87.66 0.68 22.10 16 14 O -0.57 -30.36 16.08 15.77 0.25 -30.10 16 15 C 0.06 2.04 4.51 71.23 0.32 2.36 16 16 O -0.35 -12.28 9.02 -50.39 -0.45 -12.73 16 17 C 0.51 15.92 7.86 70.20 0.55 16.48 16 18 O -0.53 -15.88 13.59 19.77 0.27 -15.62 16 19 C -0.23 -6.30 5.89 -19.99 -0.12 -6.42 16 20 C -0.03 -0.90 9.25 22.52 0.21 -0.70 16 21 C -0.16 -3.18 5.87 -19.89 -0.12 -3.29 16 22 C -0.11 -1.67 10.00 71.24 0.71 -0.96 16 23 C -0.03 -0.39 9.67 22.30 0.22 -0.17 16 24 C -0.20 -2.96 9.92 22.37 0.22 -2.73 16 25 C 0.27 5.58 6.76 38.74 0.26 5.84 16 26 N -0.85 -14.87 8.53 -50.93 -0.43 -15.30 16 27 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 28 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.06 1.22 7.22 -2.39 -0.02 1.21 16 30 H 0.08 2.55 8.07 -2.39 -0.02 2.53 16 31 H 0.09 2.24 6.44 -2.39 -0.02 2.23 16 32 H 0.06 2.49 7.13 -2.39 -0.02 2.47 16 33 H 0.02 1.09 6.85 -2.39 -0.02 1.07 16 34 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 35 H 0.11 3.28 7.40 -2.39 -0.02 3.26 16 36 H 0.13 3.28 7.18 -2.39 -0.02 3.26 16 37 H 0.12 3.52 7.63 -2.91 -0.02 3.49 16 38 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.06 1.01 8.08 -2.39 -0.02 0.99 16 40 H 0.09 0.92 8.08 -2.38 -0.02 0.90 16 41 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 42 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 43 H 0.41 8.45 6.03 -92.71 -0.56 7.89 16 44 H 0.41 4.37 8.90 -92.70 -0.82 3.55 16 Total: -1.00 -81.55 371.07 4.66 -76.89 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: -0.40 Total: 22.97 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: 5.27 Total: 13.69 kcal Atomic # 7 Polarization: -99.29 SS G_CDS: -2.16 Total: -101.45 kcal Atomic # 8 Polarization: -58.52 SS G_CDS: 0.07 Total: -58.45 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.88 Total: 46.35 kcal Total: -81.55 4.66 -76.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061208403.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.961 kcal (2) G-P(sol) polarization free energy of solvation -81.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds