Wall clock time and date at job start Tue Mar 31 2020 12:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.47510 * 2 1 4 4 C 1.46500 * 120.00082 * 270.00758 * 3 2 1 5 5 C 1.50708 * 109.46713 * 269.99523 * 4 3 2 6 6 H 1.07993 * 120.00248 * 0.02562 * 5 4 3 7 7 C 1.37883 * 119.99558 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00261 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99462 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47001 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46915 * 120.00066 * 9 7 5 12 12 H 1.48501 * 109.46821 * 240.00010 * 9 7 5 13 13 C 1.34777 * 119.99932 * 89.99706 * 3 2 1 14 14 O 1.21287 * 119.99742 * 180.02562 * 13 3 2 15 15 C 1.50694 * 120.00112 * 0.02562 * 13 3 2 16 16 O 1.45201 * 109.47207 * 179.97438 * 15 13 3 17 17 C 1.34228 * 116.99749 * 179.97438 * 16 15 13 18 18 O 1.20831 * 120.00461 * 359.97438 * 17 16 15 19 19 C 1.50705 * 119.99744 * 180.02562 * 17 16 15 20 20 C 1.50699 * 109.47057 * 179.97438 * 19 17 16 21 21 C 1.38675 * 120.41772 * 89.99771 * 20 19 17 22 22 C 1.38630 * 118.41860 * 179.74920 * 21 20 19 23 23 C 1.38224 * 119.16347 * 0.25530 * 22 21 20 24 24 C 1.50700 * 119.62022 * 179.97438 * 23 22 21 25 25 N 1.31857 * 120.76155 * 0.02562 * 23 22 21 26 26 C 1.31879 * 121.72569 * 359.97438 * 25 23 22 27 27 H 1.08992 * 109.47302 * 59.99699 * 1 2 3 28 28 H 1.09000 * 109.46979 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46433 * 299.99843 * 1 2 3 30 30 H 1.09004 * 109.46817 * 240.00254 * 2 1 3 31 31 H 1.09002 * 109.47289 * 120.00395 * 2 1 3 32 32 H 1.08999 * 109.47308 * 29.99232 * 4 3 2 33 33 H 1.08998 * 109.47585 * 149.99706 * 4 3 2 34 34 H 0.97000 * 119.99886 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.47458 * 59.99316 * 15 13 3 36 36 H 1.09003 * 109.46976 * 299.99589 * 15 13 3 37 37 H 1.09002 * 109.46962 * 60.00286 * 19 17 16 38 38 H 1.08994 * 109.47093 * 299.99793 * 19 17 16 39 39 H 1.08002 * 120.79244 * 0.03059 * 21 20 19 40 40 H 1.07997 * 120.41760 * 180.23193 * 22 21 20 41 41 H 1.09007 * 109.46662 * 89.99795 * 24 23 22 42 42 H 1.08999 * 109.47158 * 209.99996 * 24 23 22 43 43 H 1.08991 * 109.47069 * 330.00334 * 24 23 22 44 44 H 1.08008 * 119.61493 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3427 1.2302 -1.0963 7 6 4.1491 2.3896 -2.8781 8 7 3.3491 3.1257 -3.6181 9 14 5.9131 2.0955 -3.4177 10 1 6.6004 1.2394 -2.4177 11 1 5.9200 1.4163 -4.7383 12 1 6.6209 3.3964 -3.5264 13 6 2.2430 2.0165 1.1672 14 8 2.6470 3.1601 1.1672 15 6 1.9923 1.3060 2.4723 16 8 2.3073 2.1954 3.5759 17 6 2.1362 1.7116 4.8162 18 8 1.7360 0.5826 4.9746 19 6 2.4421 2.5772 6.0114 20 6 2.1679 1.8036 7.2753 21 6 3.1674 1.0441 7.8645 22 6 2.8712 0.3532 9.0293 23 6 1.5970 0.4394 9.5580 24 6 1.2635 -0.3078 10.8235 25 7 0.6695 1.1671 8.9673 26 6 0.9156 1.8374 7.8585 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8900 32 1 1.5817 1.6877 -2.0284 33 1 2.0956 3.1410 -1.1384 34 1 3.6751 3.5162 -4.4440 35 1 2.6227 0.4186 2.5299 36 1 0.9444 1.0115 2.5302 37 1 1.8126 3.4667 5.9865 38 1 3.4908 2.8733 5.9866 39 1 4.1545 0.9957 7.4288 40 1 3.6264 -0.2451 9.5173 41 1 1.4693 0.3272 11.6853 42 1 0.2083 -0.5808 10.8170 43 1 1.8719 -1.2101 10.8836 44 1 0.1305 2.4232 7.4035 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061852050.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:15 Heat of formation + Delta-G solvation = -111.794863 kcal Electronic energy + Delta-G solvation = -25962.181007 eV Core-core repulsion = 22071.843014 eV Total energy + Delta-G solvation = -3890.337993 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.94275 -41.13830 -40.47200 -37.69760 -36.98093 -35.16744 -34.94116 -33.25116 -31.81457 -31.39008 -30.39947 -28.47735 -27.08518 -24.93211 -24.54620 -24.17125 -23.05008 -21.73692 -20.28074 -19.01725 -18.65374 -18.13172 -18.02810 -17.48415 -17.39779 -17.14579 -16.75082 -16.24024 -16.03532 -15.83015 -15.29571 -14.83617 -14.78214 -14.54516 -14.25154 -14.05321 -13.93548 -13.74173 -13.62756 -13.31777 -13.25763 -13.20906 -13.06141 -12.99511 -12.70242 -12.53024 -12.51762 -12.23718 -12.06469 -11.80304 -11.74588 -11.69641 -10.79174 -10.72730 -10.65668 -10.44139 -9.78873 -9.55325 -8.23811 -6.38205 0.02344 0.32529 1.07822 1.32140 1.37039 1.39292 1.50887 1.61437 2.31841 2.44363 2.82374 3.06305 3.32693 3.42264 3.57937 3.74365 3.79690 3.94715 3.98127 3.99229 4.01288 4.14115 4.36159 4.36652 4.51854 4.57183 4.64934 4.71474 4.80018 4.84618 4.87425 4.93111 5.01783 5.13892 5.18427 5.19179 5.27455 5.28985 5.34511 5.53684 5.77168 5.78949 6.03479 6.53256 6.65353 6.71326 7.01410 7.20606 7.36023 8.83789 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023405 B = 0.002276 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.039450 B =12301.367866 C =12784.702750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.262 3.738 5 C -0.543 4.543 6 H 0.055 0.945 7 C 0.007 3.993 8 N -0.927 5.927 9 Si 0.969 3.031 10 H -0.267 1.267 11 H -0.270 1.270 12 H -0.282 1.282 13 C 0.499 3.501 14 O -0.576 6.576 15 C 0.063 3.937 16 O -0.347 6.347 17 C 0.464 3.536 18 O -0.528 6.528 19 C -0.061 4.061 20 C -0.143 4.143 21 C -0.063 4.063 22 C -0.173 4.173 23 C 0.110 3.890 24 C -0.102 4.102 25 N -0.514 5.514 26 C 0.106 3.894 27 H 0.044 0.956 28 H 0.096 0.904 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.029 0.971 33 H 0.000 1.000 34 H 0.267 0.733 35 H 0.115 0.885 36 H 0.119 0.881 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.155 0.845 40 H 0.163 0.837 41 H 0.090 0.910 42 H 0.070 0.930 43 H 0.094 0.906 44 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.983 -8.528 25.448 27.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.328 5.328 4 C 0.141 3.859 5 C -0.582 4.582 6 H 0.073 0.927 7 C -0.192 4.192 8 N -0.567 5.567 9 Si 0.793 3.207 10 H -0.191 1.191 11 H -0.195 1.195 12 H -0.207 1.207 13 C 0.286 3.714 14 O -0.456 6.456 15 C -0.014 4.014 16 O -0.263 6.263 17 C 0.308 3.692 18 O -0.417 6.417 19 C -0.099 4.099 20 C -0.145 4.145 21 C -0.089 4.089 22 C -0.193 4.193 23 C -0.027 4.027 24 C -0.159 4.159 25 N -0.224 5.224 26 C -0.051 4.051 27 H 0.064 0.936 28 H 0.115 0.885 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.115 0.885 32 H 0.047 0.953 33 H 0.018 0.982 34 H 0.076 0.924 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.160 0.840 38 H 0.160 0.840 39 H 0.172 0.828 40 H 0.180 0.820 41 H 0.108 0.892 42 H 0.089 0.911 43 H 0.113 0.887 44 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -3.756 -8.166 25.658 27.187 hybrid contribution 1.418 0.110 -1.415 2.006 sum -2.338 -8.056 24.244 25.654 Atomic orbital electron populations 1.22174 0.94379 1.03738 1.01844 1.21851 0.95509 0.81049 1.04346 1.48209 1.63598 1.15217 1.05755 1.18800 0.95610 0.91699 0.79762 1.21725 0.97788 1.32093 1.06577 0.92715 1.25865 1.02437 0.94476 0.96438 1.70051 1.37685 1.34122 1.14816 0.85350 0.78958 0.78013 0.78373 1.19092 1.19482 1.20747 1.20559 0.78325 0.86665 0.85837 1.90680 1.47106 1.20083 1.87752 1.22782 1.04521 0.92037 0.82044 1.86575 1.78981 1.45542 1.15189 1.24327 0.73482 0.87108 0.84238 1.90677 1.43194 1.21105 1.86696 1.20328 1.08129 0.97440 0.83955 1.20367 0.95797 1.01072 0.97253 1.21847 1.00065 0.92599 0.94381 1.22261 0.98141 1.01672 0.97211 1.21905 0.89948 0.93739 0.97132 1.20797 1.03334 0.99763 0.92048 1.67561 1.36089 1.08498 1.10288 1.22878 0.95446 0.95572 0.91225 0.93643 0.88484 0.92451 0.90007 0.88501 0.95300 0.98153 0.92360 0.86684 0.86317 0.83950 0.83960 0.82777 0.81974 0.89181 0.91149 0.88686 0.81832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.99 10.24 71.98 0.74 -3.26 16 2 C 0.09 2.82 5.93 86.38 0.51 3.33 16 3 N -0.60 -24.96 2.46 -826.14 -2.03 -26.99 16 4 C 0.26 13.98 5.16 85.64 0.44 14.43 16 5 C -0.54 -31.01 9.39 25.60 0.24 -30.77 16 6 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 7 C 0.01 0.40 5.46 84.66 0.46 0.86 16 8 N -0.93 -55.64 13.29 21.45 0.28 -55.36 16 9 Si 0.97 44.56 29.54 68.60 2.03 46.59 16 10 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 13 C 0.50 20.99 7.75 87.66 0.68 21.67 16 14 O -0.58 -30.33 16.08 15.75 0.25 -30.08 16 15 C 0.06 1.91 4.50 71.23 0.32 2.23 16 16 O -0.35 -10.55 9.76 -45.04 -0.44 -10.99 16 17 C 0.46 11.32 7.95 71.24 0.57 11.88 16 18 O -0.53 -15.06 15.78 21.95 0.35 -14.72 16 19 C -0.06 -0.96 5.97 29.10 0.17 -0.79 16 20 C -0.14 -2.54 4.39 -19.77 -0.09 -2.62 16 21 C -0.06 -1.00 9.86 22.47 0.22 -0.78 16 22 C -0.17 -2.55 9.74 22.36 0.22 -2.33 16 23 C 0.11 1.94 6.78 42.55 0.29 2.23 16 24 C -0.10 -1.14 10.17 71.24 0.72 -0.41 16 25 N -0.51 -11.34 10.27 -183.89 -1.89 -13.23 16 26 C 0.11 2.11 10.86 84.67 0.92 3.02 16 27 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.06 1.33 7.22 -2.39 -0.02 1.31 16 30 H 0.08 2.55 8.07 -2.38 -0.02 2.53 16 31 H 0.10 2.27 6.44 -2.39 -0.02 2.25 16 32 H 0.03 1.56 8.07 -2.39 -0.02 1.54 16 33 H 0.00 0.02 7.42 -2.39 -0.02 0.00 16 34 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 35 H 0.12 3.03 7.39 -2.38 -0.02 3.02 16 36 H 0.12 3.03 7.18 -2.39 -0.02 3.01 16 37 H 0.14 1.65 8.10 -2.39 -0.02 1.63 16 38 H 0.14 1.62 8.10 -2.39 -0.02 1.61 16 39 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 40 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 41 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 42 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.09 0.65 8.08 -2.39 -0.02 0.63 16 44 H 0.16 2.68 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -81.29 381.57 5.97 -75.32 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 1.00 Total: 10.77 kcal Atomic # 6 Polarization: 12.28 SS G_CDS: 6.42 Total: 18.69 kcal Atomic # 7 Polarization: -91.94 SS G_CDS: -3.63 Total: -95.57 kcal Atomic # 8 Polarization: -55.95 SS G_CDS: 0.16 Total: -55.79 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -81.29 5.97 -75.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061852050.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.479 kcal (2) G-P(sol) polarization free energy of solvation -81.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds