Wall clock time and date at job start Tue Mar 31 2020 13:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45194 * 109.46986 * 2 1 4 4 C 1.34230 * 116.99730 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00534 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99968 * 179.97438 * 4 3 2 7 7 C 1.52998 * 109.47322 * 180.02562 * 6 4 3 8 8 C 1.50702 * 109.47215 * 180.02562 * 7 6 4 9 9 O 1.21282 * 120.00036 * 5.23182 * 8 7 6 10 10 N 1.34775 * 119.99767 * 185.23796 * 8 7 6 11 11 C 1.46495 * 120.00058 * 4.91802 * 10 8 7 12 12 C 1.50702 * 109.47450 * 84.49774 * 11 10 8 13 13 H 1.08000 * 119.99423 * 354.80751 * 12 11 10 14 14 C 1.37876 * 119.99865 * 174.81033 * 12 11 10 15 15 N 1.31516 * 119.99723 * 185.34444 * 14 12 11 16 16 Si 1.86801 * 120.00284 * 5.34715 * 14 12 11 17 17 H 1.48496 * 109.47219 * 84.71347 * 16 14 12 18 18 H 1.48497 * 109.47094 * 204.71624 * 16 14 12 19 19 H 1.48500 * 109.46834 * 324.71070 * 16 14 12 20 20 C 1.46501 * 119.99611 * 184.91084 * 10 8 7 21 21 C 1.50693 * 109.47602 * 269.99918 * 20 10 8 22 22 C 1.38674 * 120.42282 * 269.72266 * 21 20 10 23 23 C 1.38623 * 118.42226 * 179.78142 * 22 21 20 24 24 C 1.38232 * 119.16118 * 0.51362 * 23 22 21 25 25 N 1.31851 * 120.76286 * 359.73115 * 24 23 22 26 26 C 1.31886 * 121.72405 * 359.97438 * 25 24 23 27 27 H 1.08999 * 109.46953 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47601 * 300.00056 * 1 2 3 29 29 H 1.09003 * 109.46623 * 60.00000 * 1 2 3 30 30 H 1.08998 * 109.46870 * 239.99817 * 2 1 3 31 31 H 1.09003 * 109.46623 * 120.00000 * 2 1 3 32 32 H 1.09006 * 109.47061 * 60.00071 * 6 4 3 33 33 H 1.09000 * 109.47301 * 300.00444 * 6 4 3 34 34 H 1.08995 * 109.46748 * 59.99908 * 7 6 4 35 35 H 1.09000 * 109.47096 * 300.00326 * 7 6 4 36 36 H 1.09003 * 109.47224 * 324.49173 * 11 10 8 37 37 H 1.09004 * 109.46727 * 204.49318 * 11 10 8 38 38 H 0.97002 * 120.00076 * 179.97438 * 15 14 12 39 39 H 1.09007 * 109.47314 * 30.00742 * 20 10 8 40 40 H 1.09001 * 109.46829 * 150.00121 * 20 10 8 41 41 H 1.08000 * 120.78444 * 0.02597 * 22 21 20 42 42 H 1.08002 * 120.41973 * 180.21968 * 23 22 21 43 43 H 1.07995 * 119.61498 * 179.74504 * 24 23 22 44 44 H 1.08006 * 119.61808 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9373 0.0000 7 6 5.4487 2.8573 0.0001 8 6 6.0247 4.2499 0.0002 9 8 5.2899 5.2100 0.0959 10 7 7.3563 4.4283 -0.1062 11 6 8.2340 3.2769 -0.3301 12 6 8.2923 2.9687 -1.8041 13 1 7.6678 3.5154 -2.4951 14 6 9.1429 1.9889 -2.2704 15 7 9.2720 1.7914 -3.5642 16 14 10.1119 0.9419 -1.0644 17 1 9.2718 -0.1950 -0.6097 18 1 11.3320 0.4201 -1.7310 19 1 10.5024 1.7682 0.1060 20 6 7.9260 5.7737 0.0018 21 6 7.9864 6.4050 -1.3652 22 6 9.1127 6.2528 -2.1598 23 6 9.1219 6.8474 -3.4120 24 6 8.0203 7.5761 -3.8198 25 7 6.9683 7.7040 -3.0354 26 6 6.9224 7.1474 -1.8406 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.5844 3.4700 0.8896 33 1 3.5852 3.4690 -0.8904 34 1 5.7846 2.3248 -0.8896 35 1 5.7846 2.3255 0.8903 36 1 7.8434 2.4124 0.2067 37 1 9.2357 3.5078 0.0327 38 1 9.8707 1.1023 -3.8923 39 1 7.3006 6.3817 0.6556 40 1 8.9317 5.7101 0.4174 41 1 9.9608 5.6812 -1.8128 42 1 9.9809 6.7465 -4.0589 43 1 8.0214 8.0459 -4.7922 44 1 6.0430 7.2738 -1.2263 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070218098.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:52 Heat of formation + Delta-G solvation = -111.671857 kcal Electronic energy + Delta-G solvation = -27078.974568 eV Core-core repulsion = 23188.641908 eV Total energy + Delta-G solvation = -3890.332659 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.67649 -41.24359 -40.35760 -37.81298 -36.96409 -34.80281 -34.16404 -33.40986 -32.64573 -32.34982 -29.91056 -28.26797 -26.29454 -24.60697 -24.23536 -23.86675 -22.97646 -21.79315 -19.92270 -19.08248 -18.90608 -18.06480 -17.90655 -17.85134 -17.17750 -17.02377 -16.74868 -16.60941 -16.03103 -15.84754 -15.20984 -14.78663 -14.68826 -14.46543 -14.33648 -14.03655 -13.91647 -13.80633 -13.74404 -13.58741 -13.38261 -13.06389 -12.89573 -12.61320 -12.55384 -12.49084 -12.32676 -12.22071 -12.00474 -11.67532 -11.57224 -11.53573 -10.88804 -10.75976 -10.55077 -10.38924 -9.87951 -9.44292 -8.24808 -6.29558 0.21941 0.46446 1.12737 1.40489 1.44279 1.49280 1.56817 1.72247 2.35661 2.36862 3.01795 3.10948 3.51476 3.61828 3.77835 3.95010 3.98827 3.99461 4.05091 4.08103 4.10296 4.18483 4.22404 4.34690 4.50427 4.57259 4.66133 4.72324 4.79196 4.83841 4.85603 4.92006 4.93010 4.93842 5.00106 5.13889 5.30273 5.43519 5.44185 5.49025 5.65382 5.87725 6.23610 6.56259 6.69044 6.76027 7.07916 7.23654 7.36754 8.90944 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010024 B = 0.004309 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2792.526910 B = 6496.523758 C = 8234.621917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.049 3.951 3 O -0.360 6.360 4 C 0.468 3.532 5 O -0.537 6.537 6 C -0.087 4.087 7 C -0.125 4.125 8 C 0.522 3.478 9 O -0.574 6.574 10 N -0.590 5.590 11 C 0.212 3.788 12 C -0.521 4.521 13 H 0.027 0.973 14 C 0.024 3.976 15 N -0.940 5.940 16 Si 0.930 3.070 17 H -0.274 1.274 18 H -0.290 1.290 19 H -0.231 1.231 20 C 0.162 3.838 21 C -0.152 4.152 22 C -0.048 4.048 23 C -0.179 4.179 24 C 0.083 3.917 25 N -0.517 5.517 26 C 0.100 3.900 27 H 0.100 0.900 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.132 0.868 33 H 0.110 0.890 34 H 0.087 0.913 35 H 0.109 0.891 36 H 0.043 0.957 37 H 0.055 0.945 38 H 0.264 0.736 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.136 0.864 42 H 0.150 0.850 43 H 0.177 0.823 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.328 2.608 9.212 12.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.024 4.024 3 O -0.277 6.277 4 C 0.312 3.688 5 O -0.427 6.427 6 C -0.125 4.125 7 C -0.164 4.164 8 C 0.311 3.689 9 O -0.456 6.456 10 N -0.319 5.319 11 C 0.090 3.910 12 C -0.559 4.559 13 H 0.046 0.954 14 C -0.175 4.175 15 N -0.580 5.580 16 Si 0.754 3.246 17 H -0.199 1.199 18 H -0.216 1.216 19 H -0.154 1.154 20 C 0.040 3.960 21 C -0.155 4.155 22 C -0.074 4.074 23 C -0.199 4.199 24 C -0.073 4.073 25 N -0.226 5.226 26 C -0.057 4.057 27 H 0.119 0.881 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.150 0.850 33 H 0.128 0.872 34 H 0.105 0.895 35 H 0.127 0.873 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.115 0.885 40 H 0.125 0.875 41 H 0.154 0.846 42 H 0.168 0.832 43 H 0.194 0.806 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -8.131 3.170 8.870 12.443 hybrid contribution 1.426 -1.623 -0.205 2.170 sum -6.705 1.546 8.665 11.065 Atomic orbital electron populations 1.21822 0.90102 1.04419 1.03803 1.23329 0.97323 0.79237 1.02515 1.86508 1.23726 1.33782 1.83712 1.23951 0.80753 0.92821 0.71264 1.90687 1.61069 1.44280 1.46650 1.21035 0.93787 0.89872 1.07789 1.21371 0.94394 0.94740 1.05935 1.20519 0.82135 0.91158 0.75045 1.90591 1.59092 1.43275 1.52617 1.47956 1.06417 1.08155 1.69397 1.19738 0.91204 0.84875 0.95153 1.21333 1.23063 1.19349 0.92174 0.95418 1.25651 0.97435 0.98077 0.96339 1.70061 1.39005 1.34005 1.14899 0.86004 0.78220 0.80061 0.80322 1.19919 1.21632 1.15430 1.20374 1.00928 0.82556 0.92184 1.21294 0.95256 0.99221 0.99753 1.21648 0.98054 0.93969 0.93744 1.22364 1.01161 0.99105 0.97243 1.23138 0.88653 0.96053 0.99504 1.67656 1.27594 1.21857 1.05466 1.22768 0.97516 0.93191 0.92197 0.88096 0.90896 0.91444 0.91895 0.91006 0.85012 0.87220 0.89507 0.87278 0.93957 0.92699 0.92663 0.88490 0.87550 0.84600 0.83190 0.80598 0.83051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 10.29 71.98 0.74 -1.28 16 2 C 0.05 1.05 6.19 71.98 0.45 1.49 16 3 O -0.36 -9.52 10.22 -51.41 -0.53 -10.05 16 4 C 0.47 14.25 7.96 71.24 0.57 14.82 16 5 O -0.54 -19.75 15.73 21.97 0.35 -19.41 16 6 C -0.09 -2.51 5.12 29.85 0.15 -2.36 16 7 C -0.12 -4.24 3.48 29.85 0.10 -4.14 16 8 C 0.52 19.08 7.60 87.66 0.67 19.74 16 9 O -0.57 -21.81 14.87 -3.04 -0.05 -21.85 16 10 N -0.59 -21.45 2.45 -830.50 -2.04 -23.48 16 11 C 0.21 8.43 4.02 85.63 0.34 8.78 16 12 C -0.52 -26.23 9.33 25.60 0.24 -26.00 16 13 H 0.03 1.65 8.06 -2.91 -0.02 1.63 16 14 C 0.02 1.26 5.47 84.65 0.46 1.72 16 15 N -0.94 -54.82 13.96 21.45 0.30 -54.52 16 16 Si 0.93 39.32 27.48 68.60 1.88 41.20 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 18 H -0.29 -12.47 7.11 99.48 0.71 -11.77 16 19 H -0.23 -8.45 6.58 99.48 0.65 -7.80 16 20 C 0.16 5.08 5.56 85.63 0.48 5.56 16 21 C -0.15 -5.33 5.48 -19.78 -0.11 -5.44 16 22 C -0.05 -1.66 9.86 22.47 0.22 -1.44 16 23 C -0.18 -5.82 10.11 22.36 0.23 -5.60 16 24 C 0.08 2.71 11.18 84.69 0.95 3.66 16 25 N -0.52 -19.13 10.36 -195.84 -2.03 -21.16 16 26 C 0.10 3.68 10.76 84.67 0.91 4.59 16 27 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.06 1.42 8.13 -2.39 -0.02 1.40 16 31 H 0.07 1.47 8.13 -2.39 -0.02 1.45 16 32 H 0.13 3.22 8.04 -2.38 -0.02 3.20 16 33 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 34 H 0.09 3.54 7.33 -2.39 -0.02 3.53 16 35 H 0.11 3.38 7.78 -2.39 -0.02 3.37 16 36 H 0.04 1.63 6.34 -2.39 -0.02 1.61 16 37 H 0.06 2.01 6.80 -2.39 -0.02 2.00 16 38 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 39 H 0.10 2.80 7.45 -2.38 -0.02 2.78 16 40 H 0.11 2.77 7.81 -2.39 -0.02 2.75 16 41 H 0.14 4.56 8.06 -2.91 -0.02 4.53 16 42 H 0.15 4.10 8.06 -2.91 -0.02 4.08 16 43 H 0.18 4.46 8.06 -2.91 -0.02 4.44 16 44 H 0.15 5.50 7.41 -2.91 -0.02 5.48 16 Total: -1.00 -68.81 376.62 5.23 -63.58 By element: Atomic # 1 Polarization: 30.61 SS G_CDS: 0.94 Total: 31.55 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: 6.40 Total: 14.13 kcal Atomic # 7 Polarization: -95.39 SS G_CDS: -3.77 Total: -99.16 kcal Atomic # 8 Polarization: -51.08 SS G_CDS: -0.22 Total: -51.31 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 1.88 Total: 41.20 kcal Total: -68.81 5.23 -63.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070218098.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.090 kcal (2) G-P(sol) polarization free energy of solvation -68.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds