Wall clock time and date at job start Tue Mar 31 2020 12:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46897 * 109.47251 * 2 1 4 4 C 1.47005 * 111.00245 * 293.95321 * 3 2 1 5 5 C 1.53099 * 109.26071 * 177.60489 * 4 3 2 6 6 O 1.43015 * 109.25518 * 56.84847 * 5 4 3 7 7 C 1.43011 * 113.74077 * 301.33072 * 6 5 4 8 8 H 1.09006 * 109.50418 * 298.69007 * 7 6 5 9 9 C 1.50697 * 109.50818 * 178.60619 * 7 6 5 10 10 O 1.21289 * 119.99928 * 354.99918 * 9 7 6 11 11 N 1.34777 * 120.00256 * 174.99911 * 9 7 6 12 12 C 1.39921 * 120.00317 * 185.44324 * 11 9 7 13 13 C 1.38970 * 120.03582 * 34.73395 * 12 11 9 14 14 C 1.38158 * 120.06588 * 179.97438 * 13 12 11 15 15 C 1.38170 * 120.13966 * 359.97438 * 14 13 12 16 16 C 1.38909 * 120.07070 * 0.02562 * 15 14 13 17 17 O 1.35749 * 120.03078 * 179.97438 * 16 15 14 18 18 C 1.34829 * 116.99665 * 174.39673 * 17 16 15 19 19 H 1.07995 * 120.00388 * 354.64745 * 18 17 16 20 20 C 1.38658 * 119.99561 * 174.64270 * 18 17 16 21 21 N 1.31552 * 120.00417 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99522 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47059 * 90.00441 * 22 20 18 24 24 H 1.48503 * 109.46971 * 210.00076 * 22 20 18 25 25 H 1.48501 * 109.47423 * 330.00033 * 22 20 18 26 26 C 1.38714 * 120.03915 * 214.71154 * 12 11 9 27 27 C 1.47016 * 111.00127 * 170.31463 * 3 2 1 28 28 H 1.08999 * 109.47186 * 299.99463 * 1 2 3 29 29 H 1.08999 * 109.47033 * 60.00017 * 1 2 3 30 30 H 1.09004 * 109.47185 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47066 * 239.99590 * 2 1 3 32 32 H 1.08999 * 109.47033 * 119.99983 * 2 1 3 33 33 H 1.09006 * 109.50697 * 57.67386 * 4 3 2 34 34 H 1.09002 * 109.50907 * 297.54274 * 4 3 2 35 35 H 1.08997 * 109.50532 * 296.91652 * 5 4 3 36 36 H 1.09000 * 109.50678 * 176.78492 * 5 4 3 37 37 H 0.97001 * 119.99948 * 5.44458 * 11 9 7 38 38 H 1.07995 * 119.96417 * 359.97438 * 13 12 11 39 39 H 1.07995 * 119.92808 * 180.27282 * 14 13 12 40 40 H 1.07992 * 119.96046 * 180.02562 * 15 14 13 41 41 H 0.97002 * 120.00484 * 180.02562 * 21 20 18 42 42 H 1.08004 * 120.06633 * 0.02562 * 26 12 11 43 43 H 1.08995 * 109.50303 * 62.45943 * 27 3 2 44 44 H 1.08998 * 109.50532 * 302.33397 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6700 2.0674 -1.2542 5 6 2.1454 3.5212 -1.1876 6 8 3.5522 3.5462 -0.9316 7 6 3.9282 2.8908 0.2826 8 1 3.4555 3.3913 1.1278 9 6 5.4260 2.9437 0.4401 10 8 6.1128 3.4075 -0.4455 11 7 6.0023 2.4758 1.5650 12 6 7.3794 2.6278 1.7610 13 6 8.0273 3.7645 1.2927 14 6 9.3869 3.9155 1.4864 15 6 10.1065 2.9377 2.1462 16 6 9.4646 1.7992 2.6166 17 8 10.1725 0.8389 3.2643 18 6 9.4725 -0.1833 3.7964 19 1 8.3929 -0.1687 3.7728 20 6 10.1389 -1.2534 4.3739 21 7 11.4540 -1.2711 4.4030 22 14 9.1692 -2.6699 5.1105 23 1 8.9309 -3.7012 4.0689 24 1 9.9392 -3.2670 6.2311 25 1 7.8667 -2.1678 5.6170 26 6 8.0992 1.6442 2.4232 27 6 3.4709 1.4307 0.2309 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.5890 2.0440 -1.3922 34 1 2.1553 1.5638 -2.0902 35 1 1.6202 4.0394 -0.3852 36 1 1.9393 4.0154 -2.1370 37 1 5.4625 2.0336 2.2387 38 1 7.4675 4.5306 0.7770 39 1 9.8874 4.8018 1.1255 40 1 11.1690 3.0589 2.2964 41 1 11.9202 -2.0198 4.8067 42 1 7.5980 0.7598 2.7880 43 1 3.9850 0.9168 -0.5813 44 1 3.7044 0.9423 1.1769 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072971402.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:07 Heat of formation + Delta-G solvation = -88.597456 kcal Electronic energy + Delta-G solvation = -26696.557682 eV Core-core repulsion = 22807.225604 eV Total energy + Delta-G solvation = -3889.332078 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.90061 -40.79787 -39.94663 -38.13202 -37.17015 -35.76394 -34.24736 -32.98552 -31.84891 -30.97624 -30.22930 -28.04669 -27.25170 -25.57463 -24.17577 -23.52721 -22.96545 -21.60672 -21.36684 -19.84020 -19.46375 -18.50124 -17.76397 -17.26319 -16.88768 -16.80537 -16.66406 -16.26850 -16.18458 -15.92314 -15.67374 -15.52024 -15.24417 -15.17111 -14.69021 -14.57873 -14.19056 -13.93886 -13.58225 -13.28774 -13.05991 -12.94202 -12.78975 -12.72441 -12.65840 -12.52196 -12.46068 -12.10679 -11.82188 -11.79031 -11.44899 -11.31244 -10.89416 -10.80148 -10.71336 -9.54673 -9.39306 -8.91468 -8.45892 -6.14766 0.34361 0.67235 1.36828 1.39930 1.47498 1.54534 1.61747 2.18559 2.59890 2.82906 2.91899 3.16173 3.47600 3.52428 3.58225 3.85324 3.92128 3.99717 4.11630 4.23433 4.26828 4.30695 4.41899 4.45394 4.47444 4.57220 4.60870 4.63003 4.69147 4.71830 4.87476 4.98532 5.00396 5.07486 5.11226 5.33934 5.34854 5.41977 5.63970 5.65382 5.78053 5.88660 5.94742 6.01576 6.14931 6.36795 6.98097 6.99360 7.77608 8.77200 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012307 B = 0.003303 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.634406 B = 8474.800896 C =10596.853766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.045 3.955 3 N -0.533 5.533 4 C 0.012 3.988 5 C 0.059 3.941 6 O -0.387 6.387 7 C 0.092 3.908 8 H 0.122 0.878 9 C 0.519 3.481 10 O -0.541 6.541 11 N -0.654 5.654 12 C 0.187 3.813 13 C -0.201 4.201 14 C -0.051 4.051 15 C -0.212 4.212 16 C 0.135 3.865 17 O -0.225 6.225 18 C -0.413 4.413 19 H 0.105 0.895 20 C -0.023 4.023 21 N -0.921 5.921 22 Si 1.018 2.982 23 H -0.265 1.265 24 H -0.274 1.274 25 H -0.247 1.247 26 C -0.255 4.255 27 C 0.030 3.970 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.030 0.970 32 H 0.082 0.918 33 H 0.115 0.885 34 H 0.033 0.967 35 H 0.077 0.923 36 H 0.120 0.880 37 H 0.425 0.575 38 H 0.126 0.874 39 H 0.154 0.846 40 H 0.120 0.880 41 H 0.273 0.727 42 H 0.133 0.867 43 H 0.031 0.969 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.340 4.925 -6.957 26.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.082 4.082 3 N -0.259 5.259 4 C -0.116 4.116 5 C -0.017 4.017 6 O -0.306 6.306 7 C 0.030 3.970 8 H 0.140 0.860 9 C 0.306 3.694 10 O -0.416 6.416 11 N -0.302 5.302 12 C 0.093 3.907 13 C -0.221 4.221 14 C -0.070 4.070 15 C -0.232 4.232 16 C 0.083 3.917 17 O -0.131 6.131 18 C -0.489 4.489 19 H 0.123 0.877 20 C -0.220 4.220 21 N -0.558 5.558 22 Si 0.837 3.163 23 H -0.191 1.191 24 H -0.199 1.199 25 H -0.170 1.170 26 C -0.277 4.277 27 C -0.099 4.099 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.049 0.951 32 H 0.101 0.899 33 H 0.133 0.867 34 H 0.051 0.949 35 H 0.095 0.905 36 H 0.137 0.863 37 H 0.264 0.736 38 H 0.144 0.856 39 H 0.172 0.828 40 H 0.138 0.862 41 H 0.082 0.918 42 H 0.151 0.849 43 H 0.050 0.950 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -24.634 5.456 -7.241 26.250 hybrid contribution 0.306 -1.505 0.008 1.536 sum -24.329 3.951 -7.233 25.687 Atomic orbital electron populations 1.21760 0.93081 1.02536 1.02686 1.22218 0.97444 0.87261 1.01306 1.62332 1.11207 1.17478 1.34843 1.22953 1.03243 0.95233 0.90168 1.23014 0.79331 0.95773 1.03629 1.88091 1.25795 1.76759 1.39962 1.21848 0.89379 0.94845 0.90901 0.86033 1.20808 0.90581 0.77083 0.80969 1.90735 1.65214 1.44582 1.41067 1.43294 1.06375 1.58979 1.21504 1.17388 0.83206 0.93153 0.96993 1.20833 0.95472 0.98197 1.07619 1.20907 0.93156 0.97864 0.95048 1.20493 1.00668 0.94425 1.07579 1.19595 0.91031 0.89819 0.91243 1.83994 1.35868 1.30746 1.62530 1.21832 0.92295 0.97897 1.36897 0.87731 1.26606 0.97067 1.00860 0.97486 1.70186 1.08925 1.32654 1.44081 0.84596 0.77980 0.75926 0.77793 1.19054 1.19852 1.17035 1.20839 0.93877 1.01220 1.11725 1.22658 0.89484 0.94541 1.03238 0.91703 0.92187 0.91159 0.95126 0.89909 0.86743 0.94896 0.90501 0.86252 0.73584 0.85574 0.82842 0.86162 0.91845 0.84918 0.95018 0.87114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.84 71.98 0.71 -0.60 16 2 C 0.04 0.57 5.68 86.30 0.49 1.06 16 3 N -0.53 -7.95 4.73 -895.24 -4.23 -12.18 16 4 C 0.01 0.16 5.43 86.32 0.47 0.63 16 5 C 0.06 0.87 7.01 72.02 0.50 1.37 16 6 O -0.39 -9.39 10.01 -130.02 -1.30 -10.69 16 7 C 0.09 1.95 3.22 29.88 0.10 2.04 16 8 H 0.12 1.97 8.14 -2.38 -0.02 1.95 16 9 C 0.52 15.17 6.90 87.66 0.61 15.78 16 10 O -0.54 -20.89 14.30 15.90 0.23 -20.66 16 11 N -0.65 -18.31 5.30 -303.55 -1.61 -19.92 16 12 C 0.19 6.90 6.25 38.14 0.24 7.14 16 13 C -0.20 -7.46 8.65 22.43 0.19 -7.27 16 14 C -0.05 -1.88 10.03 22.23 0.22 -1.65 16 15 C -0.21 -9.20 9.99 22.41 0.22 -8.97 16 16 C 0.13 6.66 6.64 22.56 0.15 6.81 16 17 O -0.23 -13.31 9.76 -22.73 -0.22 -13.53 16 18 C -0.41 -23.32 9.44 67.92 0.64 -22.68 16 19 H 0.11 5.29 5.29 -2.91 -0.02 5.27 16 20 C -0.02 -1.25 5.49 84.84 0.47 -0.78 16 21 N -0.92 -55.77 13.67 21.61 0.30 -55.48 16 22 Si 1.02 41.30 29.55 68.60 2.03 43.33 16 23 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 24 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 25 H -0.25 -9.05 7.11 99.48 0.71 -8.34 16 26 C -0.26 -10.92 9.05 22.51 0.20 -10.71 16 27 C 0.03 0.54 4.87 86.31 0.42 0.96 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.49 6.51 -2.39 -0.02 0.47 16 30 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.03 0.43 8.12 -2.39 -0.02 0.41 16 32 H 0.08 1.00 8.04 -2.39 -0.02 0.98 16 33 H 0.11 1.03 6.37 -2.38 -0.02 1.01 16 34 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.43 8.65 8.53 -92.71 -0.79 7.86 16 38 H 0.13 4.57 6.52 -2.91 -0.02 4.55 16 39 H 0.15 4.43 8.06 -2.91 -0.02 4.41 16 40 H 0.12 5.06 8.06 -2.91 -0.02 5.04 16 41 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 42 H 0.13 5.49 5.71 -2.91 -0.02 5.48 16 43 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.11 1.60 7.81 -2.39 -0.02 1.58 16 Total: -1.00 -77.16 361.46 1.06 -76.11 By element: Atomic # 1 Polarization: 29.66 SS G_CDS: 0.24 Total: 29.90 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: 5.63 Total: -16.88 kcal Atomic # 7 Polarization: -82.03 SS G_CDS: -5.55 Total: -87.57 kcal Atomic # 8 Polarization: -43.59 SS G_CDS: -1.30 Total: -44.89 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -77.16 1.06 -76.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072971402.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.490 kcal (2) G-P(sol) polarization free energy of solvation -77.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds