Wall clock time and date at job start Tue Mar 31 2020 12:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47139 * 2 1 4 4 C 1.46503 * 119.99979 * 270.00116 * 3 2 1 5 5 C 1.50702 * 109.47182 * 269.99991 * 4 3 2 6 6 H 1.08003 * 119.99402 * 359.97438 * 5 4 3 7 7 C 1.37867 * 120.00013 * 179.97438 * 5 4 3 8 8 N 1.31523 * 119.99882 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 120.00393 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47121 * 89.99682 * 9 7 5 11 11 H 1.48497 * 109.47103 * 210.00133 * 9 7 5 12 12 H 1.48503 * 109.46687 * 329.99630 * 9 7 5 13 13 C 1.34775 * 120.00133 * 89.99410 * 3 2 1 14 14 O 1.21575 * 119.99874 * 180.02562 * 13 3 2 15 15 N 1.34777 * 119.99888 * 0.02562 * 13 3 2 16 16 C 1.39398 * 119.99872 * 175.40784 * 15 13 3 17 17 C 1.39176 * 119.91827 * 215.76684 * 16 15 13 18 18 C 1.37621 * 120.07716 * 179.97438 * 17 16 15 19 19 C 1.39841 * 119.92097 * 0.06458 * 18 17 16 20 20 C 1.47445 * 120.07867 * 180.23175 * 19 18 17 21 21 O 1.21506 * 119.99895 * 173.41334 * 20 19 18 22 22 O 1.34755 * 119.99935 * 353.41538 * 20 19 18 23 23 C 1.45198 * 116.99889 * 180.02562 * 22 20 19 24 24 C 1.39797 * 119.84227 * 359.95564 * 19 18 17 25 25 C 1.50695 * 120.04123 * 180.02562 * 24 19 18 26 26 C 1.37659 * 119.92002 * 359.97438 * 24 19 18 27 27 H 1.09007 * 109.46729 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47058 * 299.99907 * 1 2 3 29 29 H 1.08998 * 109.47208 * 60.00254 * 1 2 3 30 30 H 1.09000 * 109.46778 * 239.99682 * 2 1 3 31 31 H 1.08998 * 109.47208 * 119.99746 * 2 1 3 32 32 H 1.09007 * 109.47027 * 29.99724 * 4 3 2 33 33 H 1.09000 * 109.47588 * 149.99742 * 4 3 2 34 34 H 0.96998 * 120.00186 * 180.02562 * 8 7 5 35 35 H 0.97003 * 119.99856 * 355.40085 * 15 13 3 36 36 H 1.07992 * 119.96146 * 0.02562 * 17 16 15 37 37 H 1.07999 * 120.03929 * 180.02562 * 18 17 16 38 38 H 1.09000 * 109.46550 * 299.99787 * 23 22 20 39 39 H 1.08991 * 109.47067 * 59.99887 * 23 22 20 40 40 H 1.08997 * 109.46963 * 180.02562 * 23 22 20 41 41 H 1.09005 * 109.47128 * 83.05903 * 25 24 19 42 42 H 1.09001 * 109.47060 * 203.05873 * 25 24 19 43 43 H 1.08994 * 109.46887 * 323.06103 * 25 24 19 44 44 H 1.08000 * 119.96131 * 179.97438 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3429 1.2309 -1.0958 7 6 4.1490 2.3896 -2.8780 8 7 5.3913 2.1833 -3.2574 9 14 3.0128 3.4351 -3.9293 10 1 3.1163 4.8553 -3.5082 11 1 3.4057 3.3119 -5.3560 12 1 1.6131 2.9691 -3.7593 13 6 2.2429 2.0166 1.1672 14 8 2.6477 3.1630 1.1671 15 7 2.0187 1.3811 2.3344 16 6 2.3409 2.0030 3.5396 17 6 2.8291 1.2476 4.6017 18 6 3.1488 1.8582 5.7929 19 6 2.9813 3.2392 5.9358 20 6 3.3275 3.8977 7.2088 21 8 3.2958 5.1094 7.2942 22 8 3.6790 3.1558 8.2774 23 6 4.0063 3.8714 9.4977 24 6 2.4902 3.9947 4.8670 25 6 2.3085 5.4832 5.0159 26 6 2.1739 3.3774 3.6779 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.5817 1.6876 -2.0284 33 1 2.0955 3.1410 -1.1385 34 1 5.7174 2.5738 -4.0833 35 1 1.6329 0.4911 2.3357 36 1 2.9580 0.1811 4.4907 37 1 3.5280 1.2715 6.6165 38 1 4.8493 4.5373 9.3133 39 1 3.1444 4.4564 9.8181 40 1 4.2715 3.1574 10.2774 41 1 3.2594 5.9851 4.8365 42 1 1.5710 5.8332 4.2936 43 1 1.9638 5.7079 6.0252 44 1 1.7941 3.9603 2.8519 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078567424.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:04 Heat of formation + Delta-G solvation = -74.108423 kcal Electronic energy + Delta-G solvation = -26775.227189 eV Core-core repulsion = 22886.523403 eV Total energy + Delta-G solvation = -3888.703786 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.87255 -40.23466 -38.57040 -36.61398 -35.67319 -34.76083 -32.73147 -32.38569 -30.46306 -30.37534 -28.12501 -27.43876 -26.88271 -24.09156 -23.11638 -22.28797 -22.03010 -20.74826 -19.53509 -17.99722 -17.73688 -17.06065 -16.99646 -16.81417 -16.48942 -15.32874 -15.08603 -14.87333 -14.58983 -14.18387 -13.92564 -13.83061 -13.71284 -13.33521 -13.11761 -13.03864 -12.80273 -12.55934 -12.36809 -12.30428 -12.19961 -12.01323 -11.96104 -11.53057 -11.21378 -11.08116 -10.94086 -10.88366 -10.54675 -10.30916 -10.17668 -10.07599 -9.60041 -9.44966 -8.74681 -8.61503 -8.21447 -7.77250 -6.11141 -4.10441 0.69568 1.39257 2.48083 2.60007 2.94937 3.27415 3.33026 3.35550 3.53517 3.87236 4.18791 4.36916 4.65777 4.78126 4.86198 4.90625 4.97031 5.09044 5.20724 5.21870 5.26567 5.33576 5.39070 5.48973 5.51521 5.74940 5.79777 5.83967 5.95398 6.02798 6.04861 6.12750 6.24959 6.25752 6.30899 6.52329 6.54351 6.62816 6.81144 7.04472 7.14770 7.36716 7.57343 7.69032 8.31528 8.43746 8.91248 9.01194 9.48456 11.02267 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018387 B = 0.002947 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.408941 B = 9498.928392 C =10163.491658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.104 3.896 3 N -0.599 5.599 4 C 0.231 3.769 5 C -0.531 4.531 6 H 0.074 0.926 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.700 3.300 14 O -0.562 6.562 15 N -0.693 5.693 16 C 0.225 3.775 17 C -0.177 4.177 18 C -0.035 4.035 19 C -0.168 4.168 20 C 0.512 3.488 21 O -0.507 6.507 22 O -0.359 6.359 23 C 0.038 3.962 24 C 0.006 3.994 25 C -0.121 4.121 26 C -0.140 4.140 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.033 0.967 33 H 0.038 0.962 34 H 0.265 0.735 35 H 0.406 0.594 36 H 0.132 0.868 37 H 0.138 0.862 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.100 0.900 41 H 0.078 0.922 42 H 0.063 0.937 43 H 0.089 0.911 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.482 -3.939 20.275 22.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.020 4.020 3 N -0.334 5.334 4 C 0.110 3.890 5 C -0.569 4.569 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.535 5.535 9 Si 0.703 3.297 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.402 3.598 14 O -0.438 6.438 15 N -0.341 5.341 16 C 0.127 3.873 17 C -0.198 4.198 18 C -0.054 4.054 19 C -0.170 4.170 20 C 0.359 3.641 21 O -0.396 6.396 22 O -0.276 6.276 23 C -0.056 4.056 24 C 0.004 3.996 25 C -0.177 4.177 26 C -0.160 4.160 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.109 0.891 31 H 0.080 0.920 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.243 0.757 36 H 0.150 0.850 37 H 0.156 0.844 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.118 0.882 41 H 0.097 0.903 42 H 0.082 0.918 43 H 0.107 0.893 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -9.049 -2.718 20.009 22.127 hybrid contribution -0.407 0.007 -0.599 0.725 sum -9.456 -2.710 19.409 21.760 Atomic orbital electron populations 1.22273 0.96511 1.01792 1.02511 1.21440 0.93516 0.83875 1.03140 1.47274 1.67077 1.13430 1.05579 1.19628 0.97386 0.93229 0.78726 1.21327 0.95340 1.33107 1.07136 0.90774 1.24848 0.95006 0.95773 0.97344 1.69897 1.15117 1.44899 1.23563 0.86855 0.81368 0.81673 0.79794 1.19850 1.21061 1.19067 1.15881 0.79003 0.84871 0.80060 1.90910 1.51198 1.16317 1.85364 1.42946 1.66488 1.20945 1.03767 1.17829 0.92340 0.92374 0.84769 1.20825 1.04829 1.00544 0.93640 1.21088 0.94626 0.92815 0.96900 1.18792 1.12238 0.94154 0.91816 1.21189 0.73552 0.85466 0.83941 1.90793 1.49391 1.14985 1.84478 1.86554 1.78937 1.41205 1.20865 1.23230 1.01150 0.97809 0.83441 1.19874 0.92321 0.96473 0.90900 1.21091 1.02767 0.90186 1.03633 1.21247 1.03467 0.93803 0.97497 0.91750 0.92996 0.91884 0.89111 0.91969 0.94943 0.94367 0.92517 0.75716 0.84995 0.84421 0.91908 0.91972 0.88198 0.90312 0.91847 0.89301 0.83030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 10.24 37.16 0.38 -1.57 16 2 C 0.10 1.48 5.85 -4.04 -0.02 1.46 16 3 N -0.60 -11.70 2.46 -180.80 -0.44 -12.14 16 4 C 0.23 5.45 4.23 -5.19 -0.02 5.42 16 5 C -0.53 -14.95 9.94 -34.44 -0.34 -15.30 16 6 H 0.07 2.31 8.06 -52.48 -0.42 1.89 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 9 Si 0.88 21.23 27.47 -169.99 -4.67 16.56 16 10 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 13 C 0.70 13.89 8.11 -86.92 -0.71 13.18 16 14 O -0.56 -13.47 13.37 5.30 0.07 -13.40 16 15 N -0.69 -10.33 5.15 -14.22 -0.07 -10.40 16 16 C 0.23 3.31 6.29 -83.74 -0.53 2.79 16 17 C -0.18 -2.11 9.95 -39.46 -0.39 -2.50 16 18 C -0.04 -0.41 9.60 -39.21 -0.38 -0.79 16 19 C -0.17 -2.26 5.88 -104.97 -0.62 -2.87 16 20 C 0.51 6.74 7.81 34.48 0.27 7.01 16 21 O -0.51 -7.49 13.14 -19.27 -0.25 -7.74 16 22 O -0.36 -3.92 9.83 -40.64 -0.40 -4.32 16 23 C 0.04 0.29 10.57 101.05 1.07 1.35 16 24 C 0.01 0.08 5.91 -104.25 -0.62 -0.54 16 25 C -0.12 -1.64 8.70 36.00 0.31 -1.32 16 26 C -0.14 -2.22 8.28 -39.46 -0.33 -2.55 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.09 1.37 8.07 -51.93 -0.42 0.95 16 31 H 0.06 0.72 6.43 -51.93 -0.33 0.38 16 32 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 33 H 0.04 0.97 6.85 -51.93 -0.36 0.61 16 34 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 35 H 0.41 4.60 6.62 -40.82 -0.27 4.33 16 36 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.14 1.25 7.62 -52.49 -0.40 0.85 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.06 0.79 8.03 -51.93 -0.42 0.37 16 43 H 0.09 1.19 5.90 -51.93 -0.31 0.89 16 44 H 0.15 2.70 6.25 -52.49 -0.33 2.37 16 LS Contribution 367.25 15.07 5.53 5.53 Total: -1.00 -34.98 367.25 -7.65 -42.62 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -6.17 Total: 4.20 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: -2.01 Total: 5.78 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: 0.26 Total: -49.24 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.58 Total: -25.46 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.98 -7.65 -42.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078567424.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.486 kcal (2) G-P(sol) polarization free energy of solvation -34.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds